Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041561.1

Orthogroup ID

OG0001656

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3009

Gene Structure 3009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1169 bp

atggatttatcactcaaaacttcttcagtttgcaggaagtgcatatatgacaagatcacggaagaggaaatagagtactgtccaatatgcaagactgatctgggttgtgttcccttggagaaattgaggcctgaccacaatatgcaagatgtaagggccaagattttccctttcaaaagaagaaaggtgaatgcacctgaaactatgccttcagcactgccggctagaagaaaggagagatcactctcatcattggtggtcagtactcccagagtgtcatcaacccaggcgaccatgactggaaggagaactaaagctgttgcaagaaaggcttctactttacaaggatccagttttgtggttgagaggtccgttaataaagaggacggatctggggaagatcatgcagagagccaaagctccctggaggcctcagataagtccggtcaaaatgccaggccgagttcgttttctgccgaacccagtgaacctgtatccaataaagaatctgagaatggtgctgaatcatgggatgggaagttagacctttggaaacctctaaattgtttggtggaagttgcaaatcggaccaagtctctgaaacccaattcacaagggtctgaaagagtagaagcggctgtcattcccaatgaaactcaagttcgtaaattcaagaataaagaaaacaaacagaaatcaaaagttgaggatgaaaagaatagcactcatcctccctctcctgaaacaataaaacctaaaaagttgcgtagggctcgccaaaagagggaagctgtaggagaatcaagcgttacaccccaagctgttttggatgcagccagtggaaaacttgaaagaagagttggtcccatttggttctccctagtagcttctgaagaacaggaaggagaagaatccttgcctcagattcctacaagttatttaagaataaaagatggaagtgtgcctgtctcatttatccagaagtacctaatgaggaagctagatctcactagtgaaactgaggttgagatcaaatgcatgggacaaccagtgaccccaacattggagatgtataatttggttgacttgtggctacaaaccgcatcacctacacaaagaattccagcatccattggttcctctgcaaaggattttgtgatggtgctcgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

390

Amino Acids

43.28

Weight (kDa)

8.99

Isoelectric Point (pI)

59.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580
fragaria_vesca	FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710
malus_domestica	MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1
prunus_persica	Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1
pyrus_communis	pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160
rosa_chinensis	RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351
rosa_laevigata	RLG00000012310 RLG00000025707
rosa_multiflora	Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428390 Rroxscaffold_7G00179330
rosa_rugosa	Rorug02G0629900 Rorug02G0630000 Rorug06G0202900
rosa_samantha	Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200
rosa_wichuraiana	Rw3G002380 Rw6G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	635, 1101
AclWI	GGATC	3 cut(s)	342, 355, 397
AcsI	RAATTY	2 cut(s)	668, 1119
AcuI	CTGAAG	3 cut(s)	9, 195, 912
AfaI	GTAC	3 cut(s)	77, 265, 986
AfiI	CCNNNNNNNGG	2 cut(s)	784, 1063
AgsI	TTSAA	3 cut(s)	175, 673, 851
AhlI	ACTAGT	1 cut(s)	1010
AjnI	CCWGG	3 cut(s)	285, 423, 455
AjuI	GAANNNNNNNTTGG	2 cut(s)	843, 875
AluBI	AGCT	6 cut(s)	317, 420, 791, 821, 887, 1000
AluI	AGCT	6 cut(s)	317, 420, 791, 821, 887, 1000
Alw21I	GWGCWC	1 cut(s)	1167
Alw26I	GTCTC	2 cut(s)	600, 973
AlwI	GGATC	3 cut(s)	342, 355, 397
AoxI	GGCC	4 cut(s)	128, 156, 429, 458
ApeKI	GCWGC	1 cut(s)	833
ApoI	RAATTY	2 cut(s)	668, 1119
Asp700I	GAANNNNTTC	1 cut(s)	331
AspS9I	GGNCC	4 cut(s)	156, 369, 588, 863
AsuHPI	GGTGA	2 cut(s)	199, 1098
AvaII	GGWCC	3 cut(s)	369, 588, 863
BamHI	GGATCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	775
Bbv12I	GWGCWC	1 cut(s)	1167
BbvI	GCAGC	1 cut(s)	845
BccI	CCATC	3 cut(s)	527, 947, 1153
BciT130I	CCWGG	3 cut(s)	287, 425, 457
BciVI	GTATCC	1 cut(s)	505
BcoDI	GTCTC	2 cut(s)	600, 973
BcuI	ACTAGT	1 cut(s)	1010
BfaI	CTAG	4 cut(s)	225, 881, 1001, 1011
BfmI	CTRYAG	1 cut(s)	792
BfuI	GTATCC	1 cut(s)	505
BglII	AGATCT	1 cut(s)	1003
BisI	GCNGC	2 cut(s)	636, 834
BlsI	GCNGC	2 cut(s)	637, 835
BmcAI	AGTACT	2 cut(s)	77, 265
Bme1390I	CCNGG	3 cut(s)	287, 425, 457
Bme18I	GGWCC	3 cut(s)	369, 588, 863
BmgT120I	GGNCC	4 cut(s)	156, 369, 588, 863
BmiI	GGNNCC	3 cut(s)	349, 865, 1138
BmrFI	CCNGG	3 cut(s)	287, 425, 457
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	3 cut(s)	820, 1112, 1136
BmuI	ACTGGG	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	642
BsaJI	CCNNGG	3 cut(s)	114, 285, 423
BsaWI	WCCGGW	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	715, 745
Bsc4I	CCNNNNNNNGG	2 cut(s)	784, 1063
Bse118I	RCCGGY	1 cut(s)	220
Bse1I	ACTGG	5 cut(s)	304, 351, 483, 837, 1049
BseBI	CCWGG	3 cut(s)	287, 425, 457
BseDI	CCNNGG	3 cut(s)	114, 285, 423
BseGI	GGATG	5 cut(s)	538, 715, 727, 835, 1127
BseLI	CCNNNNNNNGG	2 cut(s)	784, 1063
BseMII	CTCAG	4 cut(s)	447, 501, 935, 1011
BseNI	ACTGG	5 cut(s)	304, 351, 483, 837, 1049
BseXI	GCAGC	1 cut(s)	845
BshFI	GGCC	4 cut(s)	130, 158, 431, 460
BsiHKAI	GWGCWC	1 cut(s)	1167
BsiSI	CCGG	2 cut(s)	221, 444
BslFI	GGGAC	2 cut(s)	849, 1056
BslI	CCNNNNNNNGG	2 cut(s)	784, 1063
BsmAI	GTCTC	2 cut(s)	600, 973
BsmFI	GGGAC	2 cut(s)	849, 1056
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	4 cut(s)	130, 158, 431, 460
Bsp1286I	GDGCHC	2 cut(s)	775, 1167
Bsp143I	GATC	8 cut(s)	54, 97, 239, 347, 389, 400, 1003, 1029
BspACI	CCGC	2 cut(s)	635, 1101
BspANI	GGCC	4 cut(s)	130, 158, 431, 460
BspCNI	CTCAG	4 cut(s)	446, 502, 934, 1012
BspLI	GGNNCC	3 cut(s)	349, 865, 1138
BspPI	GGATC	3 cut(s)	342, 355, 397
BsrFI	RCCGGY	1 cut(s)	220
BsrI	ACTGG	5 cut(s)	304, 351, 483, 837, 1049
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	114, 285, 423
BssMI	GATC	8 cut(s)	54, 97, 239, 347, 389, 400, 1003, 1029
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	287, 425, 457
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	57, 850
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	222, 775
BstDEI	CTNAG	4 cut(s)	433, 510, 921, 1020
BstF5I	GGATG	5 cut(s)	538, 715, 727, 835, 1127
BstKTI	GATC	8 cut(s)	57, 100, 242, 350, 392, 403, 1006, 1032
BstMAI	GTCTC	2 cut(s)	600, 973
BstMBI	GATC	8 cut(s)	54, 97, 239, 347, 389, 400, 1003, 1029
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 221, 329
BstNI	CCWGG	3 cut(s)	287, 425, 457
BstSCI	CCNGG	3 cut(s)	285, 423, 455
BstSFI	CTRYAG	1 cut(s)	792
BstV1I	GCAGC	1 cut(s)	845
BstX2I	RGATCY	3 cut(s)	347, 389, 1003
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	3 cut(s)	347, 389, 1003
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	130, 158, 431, 460
BtsCI	GGATG	5 cut(s)	538, 715, 727, 835, 1127
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	4 cut(s)	215, 490, 844, 1056
Cac8I	GCNNGC	2 cut(s)	222, 775
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	4 cut(s)	156, 369, 588, 863
Csp6I	GTAC	3 cut(s)	76, 264, 985
CviAII	CATG	4 cut(s)	295, 404, 528, 1039
CviQI	GTAC	3 cut(s)	76, 264, 985
DdeI	CTNAG	4 cut(s)	433, 510, 921, 1020
DpnI	GATC	8 cut(s)	56, 99, 241, 349, 391, 402, 1005, 1031
DpnII	GATC	8 cut(s)	54, 97, 239, 347, 389, 400, 1003, 1029
Eam1104I	CTCTTC	2 cut(s)	57, 850
EarI	CTCTTC	2 cut(s)	57, 850
Eco130I	CCWWGG	1 cut(s)	114
Eco147I	AGGCCT	2 cut(s)	130, 431
Eco24I	GRGCYC	1 cut(s)	775
Eco47I	GGWCC	3 cut(s)	369, 588, 863
Eco57I	CTGAAG	3 cut(s)	9, 195, 912
EcoRI	GAATTC	1 cut(s)	1119
EcoRII	CCWGG	3 cut(s)	285, 423, 455
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	1040
EcoT38I	GRGCYC	1 cut(s)	775
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	4 cut(s)	298, 407, 531, 1042
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FaqI	GGGAC	2 cut(s)	849, 1056
FatI	CATG	4 cut(s)	294, 403, 527, 1038
Fnu4HI	GCNGC	2 cut(s)	636, 834
FokI	GGATG	5 cut(s)	545, 714, 722, 842, 1114
FriOI	GRGCYC	1 cut(s)	775
Fsp4HI	GCNGC	2 cut(s)	636, 834
FspBI	CTAG	4 cut(s)	225, 881, 1001, 1011
GluI	GCNGC	2 cut(s)	636, 834
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	4 cut(s)	130, 158, 431, 460
HapII	CCGG	2 cut(s)	221, 444
Hin1II	CATG	4 cut(s)	298, 407, 531, 1042
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HinfI	GANTC	5 cut(s)	506, 524, 800, 911, 925
HpaII	CCGG	2 cut(s)	221, 444
HphI	GGTGA	2 cut(s)	199, 1098
Hpy166II	GTNNAC	2 cut(s)	488, 1084
Hpy188I	TCNGA	7 cut(s)	436, 511, 588, 600, 622, 892, 924
Hpy188III	TCNNGA	3 cut(s)	673, 740, 979
Hpy8I	GTNNAC	2 cut(s)	488, 1084
HpyAV	CCTTC	3 cut(s)	219, 297, 896
HpyCH4III	ACNGT	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 221, 329
HpyF3I	CTNAG	4 cut(s)	433, 510, 921, 1020
Hsp92II	CATG	4 cut(s)	298, 407, 531, 1042
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Kzo9I	GATC	8 cut(s)	54, 97, 239, 347, 389, 400, 1003, 1029
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	1 cut(s)	845
LweI	GCATC	3 cut(s)	820, 1112, 1136
MaeI	CTAG	4 cut(s)	225, 881, 1001, 1011
MaeIII	GTNAC	2 cut(s)	808, 1051
MalI	GATC	8 cut(s)	56, 99, 241, 349, 391, 402, 1005, 1031
MboI	GATC	8 cut(s)	54, 97, 239, 347, 389, 400, 1003, 1029
MboII	GAAGA	8 cut(s)	15, 74, 192, 240, 410, 867, 905, 920
MflI	RGATCY	3 cut(s)	347, 389, 1003
MhlI	GDGCHC	2 cut(s)	775, 1167
MluCI	AATT	6 cut(s)	122, 562, 607, 668, 1075, 1119
Mph1103I	ATGCAT	1 cut(s)	1040
MroNI	GCCGGC	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	2 cut(s)	375, 941
MspI	CCGG	2 cut(s)	221, 444
MspR9I	CCNGG	3 cut(s)	287, 425, 457
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	3 cut(s)	287, 425, 457
MwoI	GCNNNNNNNGC	3 cut(s)	39, 221, 329
NaeI	GCCGGC	1 cut(s)	222
NdeII	GATC	8 cut(s)	54, 97, 239, 347, 389, 400, 1003, 1029
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	4 cut(s)	298, 407, 531, 1042
NlaIV	GGNNCC	3 cut(s)	349, 865, 1138
NmeAIII	GCCGAG	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	1051
NsiI	ATGCAT	1 cut(s)	1040
PceI	AGGCCT	2 cut(s)	130, 431
PctI	GAATGC	1 cut(s)	196
PdiI	GCCGGC	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	5 cut(s)	506, 524, 800, 911, 925
PflFI	GACNNNGTC	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	637, 835
Psp6I	CCWGG	3 cut(s)	285, 423, 455
PspGI	CCWGG	3 cut(s)	285, 423, 455
PspN4I	GGNNCC	3 cut(s)	349, 865, 1138
PspPI	GGNCC	4 cut(s)	156, 369, 588, 863
PsuI	RGATCY	3 cut(s)	347, 389, 1003
PsyI	GACNNNGTC	1 cut(s)	592
RsaI	GTAC	3 cut(s)	77, 265, 986
RsaNI	GTAC	3 cut(s)	76, 264, 985
SaqAI	TTAA	2 cut(s)	375, 941
SatI	GCNGC	2 cut(s)	636, 834
Sau3AI	GATC	8 cut(s)	54, 97, 239, 347, 389, 400, 1003, 1029
Sau96I	GGNCC	4 cut(s)	156, 369, 588, 863
ScaI	AGTACT	2 cut(s)	77, 265
ScrFI	CCNGG	3 cut(s)	287, 425, 457
SduI	GDGCHC	2 cut(s)	775, 1167
SfaNI	GCATC	3 cut(s)	820, 1112, 1136
SfcI	CTRYAG	1 cut(s)	792
SinI	GGWCC	3 cut(s)	369, 588, 863
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
SpeI	ACTAGT	1 cut(s)	1010
Sse9I	AATT	6 cut(s)	122, 562, 607, 668, 1075, 1119
SseBI	AGGCCT	2 cut(s)	130, 431
SsiI	CCGC	2 cut(s)	635, 1101
SspMI	CTAG	4 cut(s)	225, 881, 1001, 1011
StuI	AGGCCT	2 cut(s)	130, 431
StyD4I	CCNGG	3 cut(s)	285, 423, 455
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	80
TasI	AATT	6 cut(s)	122, 562, 607, 668, 1075, 1119
TatI	WGTACW	2 cut(s)	75, 263
TauI	GCSGC	1 cut(s)	638
TfiI	GAWTC	5 cut(s)	506, 524, 800, 911, 925
Tru1I	TTAA	2 cut(s)	375, 941
Tru9I	TTAA	2 cut(s)	375, 941
TscAI	CASTG	4 cut(s)	222, 490, 844, 1056
TseFI	GTSAC	1 cut(s)	1051
TseI	GCWGC	1 cut(s)	833
Tsp45I	GTSAC	1 cut(s)	1051
TspDTI	ATGAA	2 cut(s)	666, 726
TspGWI	ACGGA	3 cut(s)	74, 361, 402
TspRI	CASTG	4 cut(s)	222, 490, 844, 1056
Tth111I	GACNNNGTC	1 cut(s)	592
VpaK11BI	GGWCC	3 cut(s)	369, 588, 863
XapI	RAATTY	2 cut(s)	668, 1119
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	4 cut(s)	225, 881, 1001, 1011
ZrmI	AGTACT	2 cut(s)	77, 265
Zsp2I	ATGCAT	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.