E3 ubiquitin protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580 |
| fragaria_vesca | FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710 |
| malus_domestica | MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1 |
| prunus_persica | Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1 |
| pyrus_communis | pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160 |
| rosa_chinensis | RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351 |
| rosa_laevigata | RLG00000012310 RLG00000025707 |
| rosa_multiflora | Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00428390 Rroxscaffold_7G00179330 |
| rosa_rugosa | Rorug02G0629900 Rorug02G0630000 Rorug06G0202900 |
| rosa_samantha | Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200 |
| rosa_wichuraiana | Rw3G002380 Rw6G027130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 476 |
| AciI | CCGC | 3 cut(s) | 474, 476, 600 |
| AclWI | GGATC | 1 cut(s) | 633 |
| AcsI | RAATTY | 1 cut(s) | 1011 |
| AcuI | CTGAAG | 5 cut(s) | 61, 282, 306, 999, 1182 |
| AcyI | GRCGYC | 1 cut(s) | 84 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 614 |
| AflII | CTTAAG | 1 cut(s) | 1027 |
| AflIII | ACRYGT | 1 cut(s) | 111 |
| AgsI | TTSAA | 3 cut(s) | 369, 656, 682 |
| AjnI | CCWGG | 1 cut(s) | 186 |
| AluBI | AGCT | 8 cut(s) | 73, 228, 377, 404, 501, 850, 908, 974 |
| AluI | AGCT | 8 cut(s) | 73, 228, 377, 404, 501, 850, 908, 974 |
| Alw21I | GWGCWC | 1 cut(s) | 283 |
| Alw26I | GTCTC | 5 cut(s) | 26, 75, 517, 1060, 1276 |
| Alw44I | GTGCAC | 1 cut(s) | 279 |
| AlwI | GGATC | 1 cut(s) | 633 |
| AoxI | GGCC | 2 cut(s) | 215, 449 |
| ApaLI | GTGCAC | 1 cut(s) | 279 |
| ApeKI | GCWGC | 6 cut(s) | 41, 495, 498, 850, 920, 1180 |
| ApoI | RAATTY | 1 cut(s) | 1011 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 105 |
| AspS9I | GGNCC | 3 cut(s) | 669, 950, 1224 |
| AsuC2I | CCSGG | 1 cut(s) | 720 |
| AsuHPI | GGTGA | 6 cut(s) | 28, 476, 495, 614, 891, 1185 |
| AvaII | GGWCC | 3 cut(s) | 669, 950, 1224 |
| AxyI | CCTNAGG | 2 cut(s) | 507, 744 |
| BaeGI | GKGCMC | 1 cut(s) | 283 |
| Bbv12I | GWGCWC | 1 cut(s) | 283 |
| BbvI | GCAGC | 6 cut(s) | 53, 507, 510, 837, 932, 1167 |
| BccI | CCATC | 3 cut(s) | 1034, 1226, 1240 |
| BceAI | ACGGC | 2 cut(s) | 613, 1203 |
| BciT130I | CCWGG | 1 cut(s) | 188 |
| BciVI | GTATCC | 1 cut(s) | 586 |
| BcnI | CCSGG | 1 cut(s) | 720 |
| BcoDI | GTCTC | 5 cut(s) | 26, 75, 517, 1060, 1276 |
| BfaI | CTAG | 4 cut(s) | 158, 564, 1088, 1098 |
| BfrI | CTTAAG | 1 cut(s) | 1027 |
| BfuI | GTATCC | 1 cut(s) | 586 |
| BglII | AGATCT | 2 cut(s) | 329, 1090 |
| BisI | GCNGC | 6 cut(s) | 42, 496, 499, 851, 921, 1181 |
| BlpI | GCTNAGC | 1 cut(s) | 558 |
| BlsI | GCNGC | 6 cut(s) | 43, 497, 500, 852, 922, 1182 |
| Bme1390I | CCNGG | 2 cut(s) | 188, 720 |
| Bme18I | GGWCC | 3 cut(s) | 669, 950, 1224 |
| BmgT120I | GGNCC | 3 cut(s) | 669, 950, 1224 |
| BmiI | GGNNCC | 3 cut(s) | 472, 1143, 1225 |
| BmrFI | CCNGG | 2 cut(s) | 188, 720 |
| BmsI | GCATC | 3 cut(s) | 437, 907, 1199 |
| BpmI | CTGGAG | 2 cut(s) | 224, 810 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 558 |
| BpuMI | CCSGG | 1 cut(s) | 720 |
| BsaHI | GRCGYC | 1 cut(s) | 84 |
| BsaI | GGTCTC | 2 cut(s) | 517, 1276 |
| BsaJI | CCNNGG | 5 cut(s) | 187, 474, 608, 694, 719 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 614 |
| Bse1I | ACTGG | 6 cut(s) | 11, 207, 432, 735, 1052, 1136 |
| Bse21I | CCTNAGG | 2 cut(s) | 507, 744 |
| BseBI | CCWGG | 1 cut(s) | 188 |
| BseDI | CCNNGG | 5 cut(s) | 187, 474, 608, 694, 719 |
| BseGI | GGATG | 3 cut(s) | 428, 922, 1062 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BseMII | CTCAG | 5 cut(s) | 480, 498, 549, 582, 758 |
| BseNI | ACTGG | 6 cut(s) | 11, 207, 432, 735, 1052, 1136 |
| BseRI | GAGGAG | 1 cut(s) | 40 |
| BseSI | GKGCMC | 1 cut(s) | 283 |
| BseXI | GCAGC | 6 cut(s) | 53, 507, 510, 837, 932, 1167 |
| Bsh1236I | CGCG | 1 cut(s) | 476 |
| BshFI | GGCC | 2 cut(s) | 217, 451 |
| BsiHKAI | GWGCWC | 1 cut(s) | 283 |
| BsiSI | CCGG | 1 cut(s) | 719 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BsmAI | GTCTC | 5 cut(s) | 26, 75, 517, 1060, 1276 |
| BsmBI | CGTCTC | 2 cut(s) | 26, 75 |
| BsmI | GAATGC | 1 cut(s) | 107 |
| BsnI | GGCC | 2 cut(s) | 217, 451 |
| Bso31I | GGTCTC | 2 cut(s) | 517, 1276 |
| Bsp1286I | GDGCHC | 1 cut(s) | 283 |
| Bsp143I | GATC | 8 cut(s) | 220, 329, 481, 625, 982, 1090, 1116, 1171 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 558 |
| Bsp19I | CCATGG | 1 cut(s) | 608 |
| BspACI | CCGC | 3 cut(s) | 474, 476, 600 |
| BspANI | GGCC | 2 cut(s) | 217, 451 |
| BspCNI | CTCAG | 5 cut(s) | 481, 499, 550, 583, 757 |
| BspFNI | CGCG | 1 cut(s) | 476 |
| BspLI | GGNNCC | 3 cut(s) | 472, 1143, 1225 |
| BspPI | GGATC | 1 cut(s) | 633 |
| BspQI | GCTCTTC | 1 cut(s) | 80 |
| BspTI | CTTAAG | 1 cut(s) | 1027 |
| BspTNI | GGTCTC | 2 cut(s) | 517, 1276 |
| BsrI | ACTGG | 6 cut(s) | 11, 207, 432, 735, 1052, 1136 |
| BssECI | CCNNGG | 5 cut(s) | 187, 474, 608, 694, 719 |
| BssMI | GATC | 8 cut(s) | 220, 329, 481, 625, 982, 1090, 1116, 1171 |
| BssNI | GRCGYC | 1 cut(s) | 84 |
| BssT1I | CCWWGG | 2 cut(s) | 608, 694 |
| Bst2UI | CCWGG | 1 cut(s) | 188 |
| Bst4CI | ACNGT | 1 cut(s) | 835 |
| Bst6I | CTCTTC | 1 cut(s) | 80 |
| BstACI | GRCGYC | 1 cut(s) | 84 |
| BstAFI | CTTAAG | 1 cut(s) | 1027 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 126 |
| BstC8I | GCNNGC | 3 cut(s) | 46, 230, 1254 |
| BstDEI | CTNAG | 6 cut(s) | 246, 489, 507, 558, 591, 744 |
| BstDSI | CCRYGG | 2 cut(s) | 474, 608 |
| BstF5I | GGATG | 3 cut(s) | 428, 922, 1062 |
| BstFNI | CGCG | 1 cut(s) | 476 |
| BstKTI | GATC | 8 cut(s) | 223, 332, 484, 628, 985, 1093, 1119, 1174 |
| BstMAI | GTCTC | 5 cut(s) | 26, 75, 517, 1060, 1276 |
| BstMBI | GATC | 8 cut(s) | 220, 329, 481, 625, 982, 1090, 1116, 1171 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 126, 416, 425 |
| BstNI | CCWGG | 1 cut(s) | 188 |
| BstNSI | RCATGY | 2 cut(s) | 48, 728 |
| BstSCI | CCNGG | 2 cut(s) | 186, 718 |
| BstSLI | GKGCMC | 1 cut(s) | 283 |
| BstUI | CGCG | 1 cut(s) | 476 |
| BstV1I | GCAGC | 6 cut(s) | 53, 507, 510, 837, 932, 1167 |
| BstX2I | RGATCY | 3 cut(s) | 329, 625, 1090 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 439 |
| BstYI | RGATCY | 3 cut(s) | 329, 625, 1090 |
| Bsu36I | CCTNAGG | 2 cut(s) | 507, 744 |
| BsuI | GTATCC | 1 cut(s) | 586 |
| BsuRI | GGCC | 2 cut(s) | 217, 451 |
| BtgI | CCRYGG | 2 cut(s) | 474, 608 |
| BtsCI | GGATG | 3 cut(s) | 428, 922, 1062 |
| BtsIMutI | CAGTG | 4 cut(s) | 18, 200, 742, 1143 |
| Cac8I | GCNNGC | 3 cut(s) | 46, 230, 1254 |
| Cfr13I | GGNCC | 3 cut(s) | 669, 950, 1224 |
| Cfr42I | CCGCGG | 1 cut(s) | 477 |
| CseI | GACGC | 1 cut(s) | 92 |
| CviAII | CATG | 6 cut(s) | 45, 49, 382, 609, 725, 935 |
| DdeI | CTNAG | 6 cut(s) | 246, 489, 507, 558, 591, 744 |
| DpnI | GATC | 8 cut(s) | 222, 331, 483, 627, 984, 1092, 1118, 1173 |
| DpnII | GATC | 8 cut(s) | 220, 329, 481, 625, 982, 1090, 1116, 1171 |
| DraI | TTTAAA | 1 cut(s) | 262 |
| Eam1104I | CTCTTC | 1 cut(s) | 80 |
| EarI | CTCTTC | 1 cut(s) | 80 |
| Eco130I | CCWWGG | 2 cut(s) | 608, 694 |
| Eco147I | AGGCCT | 1 cut(s) | 451 |
| Eco31I | GGTCTC | 2 cut(s) | 517, 1276 |
| Eco47I | GGWCC | 3 cut(s) | 669, 950, 1224 |
| Eco57I | CTGAAG | 5 cut(s) | 61, 282, 306, 999, 1182 |
| Eco81I | CCTNAGG | 2 cut(s) | 507, 744 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1224 |
| EcoRII | CCWGG | 1 cut(s) | 186 |
| EcoT14I | CCWWGG | 2 cut(s) | 608, 694 |
| EcoT22I | ATGCAT | 1 cut(s) | 50 |
| ErhI | CCWWGG | 2 cut(s) | 608, 694 |
| Esp3I | CGTCTC | 2 cut(s) | 26, 75 |
| FaeI | CATG | 6 cut(s) | 48, 52, 385, 612, 728, 938 |
| FatI | CATG | 6 cut(s) | 44, 48, 381, 608, 724, 934 |
| Fnu4HI | GCNGC | 6 cut(s) | 42, 496, 499, 851, 921, 1181 |
| FokI | GGATG | 3 cut(s) | 415, 929, 1049 |
| Fsp4HI | GCNGC | 6 cut(s) | 42, 496, 499, 851, 921, 1181 |
| FspBI | CTAG | 4 cut(s) | 158, 564, 1088, 1098 |
| GluI | GCNGC | 6 cut(s) | 42, 496, 499, 851, 921, 1181 |
| GsuI | CTGGAG | 2 cut(s) | 224, 810 |
| HaeIII | GGCC | 2 cut(s) | 217, 451 |
| HapII | CCGG | 1 cut(s) | 719 |
| HgaI | GACGC | 1 cut(s) | 92 |
| Hin1I | GRCGYC | 1 cut(s) | 84 |
| Hin1II | CATG | 6 cut(s) | 48, 52, 385, 612, 728, 938 |
| HinfI | GANTC | 4 cut(s) | 7, 859, 875, 887 |
| HpaII | CCGG | 1 cut(s) | 719 |
| HphI | GGTGA | 6 cut(s) | 28, 476, 495, 614, 891, 1185 |
| Hpy166II | GTNNAC | 3 cut(s) | 281, 605, 740 |
| Hpy188I | TCNGA | 7 cut(s) | 80, 100, 148, 703, 979, 1017, 1201 |
| Hpy188III | TCNNGA | 5 cut(s) | 631, 827, 914, 986, 1263 |
| Hpy8I | GTNNAC | 3 cut(s) | 281, 605, 740 |
| Hpy99I | CGWCG | 3 cut(s) | 343, 867, 1021 |
| HpyAV | CCTTC | 8 cut(s) | 116, 306, 384, 461, 608, 936, 983, 1206 |
| HpyCH4III | ACNGT | 1 cut(s) | 835 |
| HpyCH4IV | ACGT | 1 cut(s) | 113 |
| HpyCH4V | TGCA | 9 cut(s) | 41, 48, 120, 129, 177, 232, 281, 920, 1183 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 126, 416, 425 |
| HpyF3I | CTNAG | 6 cut(s) | 246, 489, 507, 558, 591, 744 |
| HpySE526I | ACGT | 1 cut(s) | 113 |
| Hsp92I | GRCGYC | 1 cut(s) | 84 |
| Hsp92II | CATG | 6 cut(s) | 48, 52, 385, 612, 728, 938 |
| KspI | CCGCGG | 1 cut(s) | 477 |
| Kzo9I | GATC | 8 cut(s) | 220, 329, 481, 625, 982, 1090, 1116, 1171 |
| LguI | GCTCTTC | 1 cut(s) | 80 |
| Lsp1109I | GCAGC | 6 cut(s) | 53, 507, 510, 837, 932, 1167 |
| LweI | GCATC | 3 cut(s) | 437, 907, 1199 |
| MaeI | CTAG | 4 cut(s) | 158, 564, 1088, 1098 |
| MaeII | ACGT | 1 cut(s) | 113 |
| MaeIII | GTNAC | 2 cut(s) | 301, 1022 |
| MalI | GATC | 8 cut(s) | 222, 331, 483, 627, 984, 1092, 1118, 1173 |
| MboI | GATC | 8 cut(s) | 220, 329, 481, 625, 982, 1090, 1116, 1171 |
| MboII | GAAGA | 4 cut(s) | 67, 279, 491, 992 |
| MflI | RGATCY | 3 cut(s) | 329, 625, 1090 |
| MhlI | GDGCHC | 1 cut(s) | 283 |
| MluCI | AATT | 8 cut(s) | 209, 620, 643, 729, 811, 1011, 1162, 1206 |
| MmeI | TCCRAC | 2 cut(s) | 711, 1040 |
| Mph1103I | ATGCAT | 1 cut(s) | 50 |
| MroXI | GAANNNNTTC | 1 cut(s) | 105 |
| MseI | TTAA | 4 cut(s) | 212, 261, 641, 1028 |
| MspA1I | CMGCKG | 1 cut(s) | 476 |
| MspCI | CTTAAG | 1 cut(s) | 1027 |
| MspI | CCGG | 1 cut(s) | 719 |
| MspR9I | CCNGG | 2 cut(s) | 188, 720 |
| Mva1269I | GAATGC | 1 cut(s) | 107 |
| MvaI | CCWGG | 1 cut(s) | 188 |
| MvnI | CGCG | 1 cut(s) | 476 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 126, 416, 425 |
| NciI | CCSGG | 1 cut(s) | 720 |
| NcoI | CCATGG | 1 cut(s) | 608 |
| NdeII | GATC | 8 cut(s) | 220, 329, 481, 625, 982, 1090, 1116, 1171 |
| NlaIII | CATG | 6 cut(s) | 48, 52, 385, 612, 728, 938 |
| NlaIV | GGNNCC | 3 cut(s) | 472, 1143, 1225 |
| NsiI | ATGCAT | 1 cut(s) | 50 |
| NspI | RCATGY | 2 cut(s) | 48, 728 |
| PaeI | GCATGC | 1 cut(s) | 48 |
| PceI | AGGCCT | 1 cut(s) | 451 |
| PciSI | GCTCTTC | 1 cut(s) | 80 |
| PctI | GAATGC | 1 cut(s) | 107 |
| PdmI | GAANNNNTTC | 1 cut(s) | 105 |
| PfeI | GAWTC | 4 cut(s) | 7, 859, 875, 887 |
| PflFI | GACNNNGTC | 1 cut(s) | 673 |
| PkrI | GCNGC | 6 cut(s) | 43, 497, 500, 852, 922, 1182 |
| PpuMI | RGGWCCY | 1 cut(s) | 1224 |
| Psp5II | RGGWCCY | 1 cut(s) | 1224 |
| Psp6I | CCWGG | 1 cut(s) | 186 |
| PspGI | CCWGG | 1 cut(s) | 186 |
| PspN4I | GGNNCC | 3 cut(s) | 472, 1143, 1225 |
| PspPI | GGNCC | 3 cut(s) | 669, 950, 1224 |
| PspPPI | RGGWCCY | 1 cut(s) | 1224 |
| PsuI | RGATCY | 3 cut(s) | 329, 625, 1090 |
| PsyI | GACNNNGTC | 1 cut(s) | 673 |
| SacII | CCGCGG | 1 cut(s) | 477 |
| SapI | GCTCTTC | 1 cut(s) | 80 |
| SaqAI | TTAA | 4 cut(s) | 212, 261, 641, 1028 |
| SatI | GCNGC | 6 cut(s) | 42, 496, 499, 851, 921, 1181 |
| Sau3AI | GATC | 8 cut(s) | 220, 329, 481, 625, 982, 1090, 1116, 1171 |
| Sau96I | GGNCC | 3 cut(s) | 669, 950, 1224 |
| ScrFI | CCNGG | 2 cut(s) | 188, 720 |
| SduI | GDGCHC | 1 cut(s) | 283 |
| SfaNI | GCATC | 3 cut(s) | 437, 907, 1199 |
| Sfr303I | CCGCGG | 1 cut(s) | 477 |
| SgrBI | CCGCGG | 1 cut(s) | 477 |
| SinI | GGWCC | 3 cut(s) | 669, 950, 1224 |
| SmlI | CTYRAG | 1 cut(s) | 1027 |
| SmoI | CTYRAG | 1 cut(s) | 1027 |
| SphI | GCATGC | 1 cut(s) | 48 |
| Sse9I | AATT | 8 cut(s) | 209, 620, 643, 729, 811, 1011, 1162, 1206 |
| SseBI | AGGCCT | 1 cut(s) | 451 |
| SsiI | CCGC | 3 cut(s) | 474, 476, 600 |
| SspMI | CTAG | 4 cut(s) | 158, 564, 1088, 1098 |
| StuI | AGGCCT | 1 cut(s) | 451 |
| StyD4I | CCNGG | 2 cut(s) | 186, 718 |
| StyI | CCWWGG | 2 cut(s) | 608, 694 |
| TaaI | ACNGT | 1 cut(s) | 835 |
| TaiI | ACGT | 1 cut(s) | 116 |
| TaqI | TCGA | 2 cut(s) | 785, 862 |
| TasI | AATT | 8 cut(s) | 209, 620, 643, 729, 811, 1011, 1162, 1206 |
| TfiI | GAWTC | 4 cut(s) | 7, 859, 875, 887 |
| Tru1I | TTAA | 4 cut(s) | 212, 261, 641, 1028 |
| Tru9I | TTAA | 4 cut(s) | 212, 261, 641, 1028 |
| TscAI | CASTG | 4 cut(s) | 18, 207, 742, 1143 |
| TseI | GCWGC | 6 cut(s) | 41, 495, 498, 850, 920, 1180 |
| TspDTI | ATGAA | 4 cut(s) | 473, 951, 1011, 1051 |
| TspRI | CASTG | 4 cut(s) | 18, 207, 742, 1143 |
| Tth111I | GACNNNGTC | 1 cut(s) | 673 |
| Vha464I | CTTAAG | 1 cut(s) | 1027 |
| VneI | GTGCAC | 1 cut(s) | 279 |
| VpaK11BI | GGWCC | 3 cut(s) | 669, 950, 1224 |
| XapI | RAATTY | 1 cut(s) | 1011 |
| XceI | RCATGY | 2 cut(s) | 48, 728 |
| XmnI | GAANNNNTTC | 1 cut(s) | 105 |
| XspI | CTAG | 4 cut(s) | 158, 564, 1088, 1098 |
| Zsp2I | ATGCAT | 1 cut(s) | 50 |