MD10G1191800.v1.1

E3 ubiquitin protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
28838072 .. 28842118
4047 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1191800.v1.1.491

Sequence Viewer

Length: 1284 bp
ATGGCGAATCCAGTGGTGAGAGTGAGGAGGGAGACGATTGCAGCATGCATGACTTGTCCTCTCTGCGATAAGCTCTTCAGAGACGCCACCACCATATCTGAATGCCTTCACACGTTTTGCAGGAAGTGCATATATAATAAGATTTCAGACGAGGAACTAGAAGTCTGTCCAATATGCAACATAGACCTGGGTTGTGTTCCACTGGAGAAATTAAGGCCAGATCACAGCTTGCAAGATGTAAGGGCTAAGATTTTCCCTTTTAAAAGAAGAAAGGTTAGTGCACCTGAAGTTATGCCTTCAGTTACATTACCAGCAAGGAGAAAGGAGAGATCTCTCTCGTCGTTGGTGGTCAGCACTCCCAGAGTTTCAACACAAGCTACCATGACGGGAAGGAGAACAAAAGCTGTTGCGAGAAAGGCTTTACAGGCATCCAGTTTTTTGGTTGAGAGGCCTATTATGAAAGAGGAAGGTTCCGCGGAAGATCACCCTGAGAGCAGCAGCTCACCTGAGGTCTCAAATAAGTCTGGTCAAAATAACAAGCAGAGTTCTTTTTCTGCTGAGCCTAGCCAACCTGTATCCAATAAAGAAACTGAGAACGGCGGTGAACCATGGGAAGGGAAATTGGATCTCTGGAAACCATTAAATTGTTTGGTTGAAGTTGCGAATAGGACCAAGTCTTTCAAATCCAACTCCCAAGGGTCTGAAAATAAAGTAGAACCGGGGCATGTAATTGCCAGTGAACCTCAGGTTCGCAAGTCCAAAAATAAGGAAAACAAACACAAATCGAAAGTAGAGGGGGAAAAGAATAGTAATTATCCTGCCTCTCCAGAAACAGTAAAACCTAAAAAGCTGCGTAGGATTCGACGAAAGAGGGAATCCTTTGGAGAATCAAGCATTTCACCCCAAGCTGTTCTGGATGCAGCCATTGGCAAACATGAAAGAAGGGCTGGTCCAATCTGGTTCTCACTCGTAGCTTCTGAAGATCAGGAAGGAGATGAACCCTTGCCTCAAATTCCGACGAGTTACTTAAGAATAAAAGATGGAAGTGTGCCAGTCTCGTTCATCCACAAATACCTAATGAGGAAACTAGATCTCACTAGCGAAGCCGATGTTGAGATCAAATGTATGGGGCAACCAGTGGTTCCCACATTAGAGATGTATAATTTAGTTGATCTGTGGCTGCAAACGGCATCACCTTCAGAACGAATTACAGCACCCATCGGGTCCTCTGCGAAAGATTTTGTGATGGTGCTGGCTTATTCCCGAAAGGTCTCAAACTCCTAA

Protein Analysis

428

Amino Acids

47.59

Weight (kDa)

9.22

Isoelectric Point (pI)

67.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_2 PF13923 19 - 59 1.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 19 - 59 4.2e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 19 - 52 1.2e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 476
AciI CCGC 3 cut(s) 474, 476, 600
AclWI GGATC 1 cut(s) 633
AcsI RAATTY 1 cut(s) 1011
AcuI CTGAAG 5 cut(s) 61, 282, 306, 999, 1182
AcyI GRCGYC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 614
AflII CTTAAG 1 cut(s) 1027
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 3 cut(s) 369, 656, 682
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 8 cut(s) 73, 228, 377, 404, 501, 850, 908, 974
AluI AGCT 8 cut(s) 73, 228, 377, 404, 501, 850, 908, 974
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 5 cut(s) 26, 75, 517, 1060, 1276
Alw44I GTGCAC 1 cut(s) 279
AlwI GGATC 1 cut(s) 633
AoxI GGCC 2 cut(s) 215, 449
ApaLI GTGCAC 1 cut(s) 279
ApeKI GCWGC 6 cut(s) 41, 495, 498, 850, 920, 1180
ApoI RAATTY 1 cut(s) 1011
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 3 cut(s) 669, 950, 1224
AsuC2I CCSGG 1 cut(s) 720
AsuHPI GGTGA 6 cut(s) 28, 476, 495, 614, 891, 1185
AvaII GGWCC 3 cut(s) 669, 950, 1224
AxyI CCTNAGG 2 cut(s) 507, 744
BaeGI GKGCMC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 6 cut(s) 53, 507, 510, 837, 932, 1167
BccI CCATC 3 cut(s) 1034, 1226, 1240
BceAI ACGGC 2 cut(s) 613, 1203
BciT130I CCWGG 1 cut(s) 188
BciVI GTATCC 1 cut(s) 586
BcnI CCSGG 1 cut(s) 720
BcoDI GTCTC 5 cut(s) 26, 75, 517, 1060, 1276
BfaI CTAG 4 cut(s) 158, 564, 1088, 1098
BfrI CTTAAG 1 cut(s) 1027
BfuI GTATCC 1 cut(s) 586
BglII AGATCT 2 cut(s) 329, 1090
BisI GCNGC 6 cut(s) 42, 496, 499, 851, 921, 1181
BlpI GCTNAGC 1 cut(s) 558
BlsI GCNGC 6 cut(s) 43, 497, 500, 852, 922, 1182
Bme1390I CCNGG 2 cut(s) 188, 720
Bme18I GGWCC 3 cut(s) 669, 950, 1224
BmgT120I GGNCC 3 cut(s) 669, 950, 1224
BmiI GGNNCC 3 cut(s) 472, 1143, 1225
BmrFI CCNGG 2 cut(s) 188, 720
BmsI GCATC 3 cut(s) 437, 907, 1199
BpmI CTGGAG 2 cut(s) 224, 810
Bpu1102I GCTNAGC 1 cut(s) 558
BpuMI CCSGG 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 2 cut(s) 517, 1276
BsaJI CCNNGG 5 cut(s) 187, 474, 608, 694, 719
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse1I ACTGG 6 cut(s) 11, 207, 432, 735, 1052, 1136
Bse21I CCTNAGG 2 cut(s) 507, 744
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 5 cut(s) 187, 474, 608, 694, 719
BseGI GGATG 3 cut(s) 428, 922, 1062
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMII CTCAG 5 cut(s) 480, 498, 549, 582, 758
BseNI ACTGG 6 cut(s) 11, 207, 432, 735, 1052, 1136
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 6 cut(s) 53, 507, 510, 837, 932, 1167
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 2 cut(s) 217, 451
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 719
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 5 cut(s) 26, 75, 517, 1060, 1276
BsmBI CGTCTC 2 cut(s) 26, 75
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 2 cut(s) 217, 451
Bso31I GGTCTC 2 cut(s) 517, 1276
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 8 cut(s) 220, 329, 481, 625, 982, 1090, 1116, 1171
Bsp1720I GCTNAGC 1 cut(s) 558
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 3 cut(s) 474, 476, 600
BspANI GGCC 2 cut(s) 217, 451
BspCNI CTCAG 5 cut(s) 481, 499, 550, 583, 757
BspFNI CGCG 1 cut(s) 476
BspLI GGNNCC 3 cut(s) 472, 1143, 1225
BspPI GGATC 1 cut(s) 633
BspQI GCTCTTC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 1027
BspTNI GGTCTC 2 cut(s) 517, 1276
BsrI ACTGG 6 cut(s) 11, 207, 432, 735, 1052, 1136
BssECI CCNNGG 5 cut(s) 187, 474, 608, 694, 719
BssMI GATC 8 cut(s) 220, 329, 481, 625, 982, 1090, 1116, 1171
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 2 cut(s) 608, 694
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 835
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 1027
BstAPI GCANNNNNTGC 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 46, 230, 1254
BstDEI CTNAG 6 cut(s) 246, 489, 507, 558, 591, 744
BstDSI CCRYGG 2 cut(s) 474, 608
BstF5I GGATG 3 cut(s) 428, 922, 1062
BstFNI CGCG 1 cut(s) 476
BstKTI GATC 8 cut(s) 223, 332, 484, 628, 985, 1093, 1119, 1174
BstMAI GTCTC 5 cut(s) 26, 75, 517, 1060, 1276
BstMBI GATC 8 cut(s) 220, 329, 481, 625, 982, 1090, 1116, 1171
BstMWI GCNNNNNNNGC 3 cut(s) 126, 416, 425
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 2 cut(s) 48, 728
BstSCI CCNGG 2 cut(s) 186, 718
BstSLI GKGCMC 1 cut(s) 283
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 6 cut(s) 53, 507, 510, 837, 932, 1167
BstX2I RGATCY 3 cut(s) 329, 625, 1090
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 3 cut(s) 329, 625, 1090
Bsu36I CCTNAGG 2 cut(s) 507, 744
BsuI GTATCC 1 cut(s) 586
BsuRI GGCC 2 cut(s) 217, 451
BtgI CCRYGG 2 cut(s) 474, 608
BtsCI GGATG 3 cut(s) 428, 922, 1062
BtsIMutI CAGTG 4 cut(s) 18, 200, 742, 1143
Cac8I GCNNGC 3 cut(s) 46, 230, 1254
Cfr13I GGNCC 3 cut(s) 669, 950, 1224
Cfr42I CCGCGG 1 cut(s) 477
CseI GACGC 1 cut(s) 92
CviAII CATG 6 cut(s) 45, 49, 382, 609, 725, 935
DdeI CTNAG 6 cut(s) 246, 489, 507, 558, 591, 744
DpnI GATC 8 cut(s) 222, 331, 483, 627, 984, 1092, 1118, 1173
DpnII GATC 8 cut(s) 220, 329, 481, 625, 982, 1090, 1116, 1171
DraI TTTAAA 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 608, 694
Eco147I AGGCCT 1 cut(s) 451
Eco31I GGTCTC 2 cut(s) 517, 1276
Eco47I GGWCC 3 cut(s) 669, 950, 1224
Eco57I CTGAAG 5 cut(s) 61, 282, 306, 999, 1182
Eco81I CCTNAGG 2 cut(s) 507, 744
EcoO109I RGGNCCY 1 cut(s) 1224
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 2 cut(s) 608, 694
EcoT22I ATGCAT 1 cut(s) 50
ErhI CCWWGG 2 cut(s) 608, 694
Esp3I CGTCTC 2 cut(s) 26, 75
FaeI CATG 6 cut(s) 48, 52, 385, 612, 728, 938
FatI CATG 6 cut(s) 44, 48, 381, 608, 724, 934
Fnu4HI GCNGC 6 cut(s) 42, 496, 499, 851, 921, 1181
FokI GGATG 3 cut(s) 415, 929, 1049
Fsp4HI GCNGC 6 cut(s) 42, 496, 499, 851, 921, 1181
FspBI CTAG 4 cut(s) 158, 564, 1088, 1098
GluI GCNGC 6 cut(s) 42, 496, 499, 851, 921, 1181
GsuI CTGGAG 2 cut(s) 224, 810
HaeIII GGCC 2 cut(s) 217, 451
HapII CCGG 1 cut(s) 719
HgaI GACGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 6 cut(s) 48, 52, 385, 612, 728, 938
HinfI GANTC 4 cut(s) 7, 859, 875, 887
HpaII CCGG 1 cut(s) 719
HphI GGTGA 6 cut(s) 28, 476, 495, 614, 891, 1185
Hpy166II GTNNAC 3 cut(s) 281, 605, 740
Hpy188I TCNGA 7 cut(s) 80, 100, 148, 703, 979, 1017, 1201
Hpy188III TCNNGA 5 cut(s) 631, 827, 914, 986, 1263
Hpy8I GTNNAC 3 cut(s) 281, 605, 740
Hpy99I CGWCG 3 cut(s) 343, 867, 1021
HpyAV CCTTC 8 cut(s) 116, 306, 384, 461, 608, 936, 983, 1206
HpyCH4III ACNGT 1 cut(s) 835
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 9 cut(s) 41, 48, 120, 129, 177, 232, 281, 920, 1183
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 416, 425
HpyF3I CTNAG 6 cut(s) 246, 489, 507, 558, 591, 744
HpySE526I ACGT 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 6 cut(s) 48, 52, 385, 612, 728, 938
KspI CCGCGG 1 cut(s) 477
Kzo9I GATC 8 cut(s) 220, 329, 481, 625, 982, 1090, 1116, 1171
LguI GCTCTTC 1 cut(s) 80
Lsp1109I GCAGC 6 cut(s) 53, 507, 510, 837, 932, 1167
LweI GCATC 3 cut(s) 437, 907, 1199
MaeI CTAG 4 cut(s) 158, 564, 1088, 1098
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 301, 1022
MalI GATC 8 cut(s) 222, 331, 483, 627, 984, 1092, 1118, 1173
MboI GATC 8 cut(s) 220, 329, 481, 625, 982, 1090, 1116, 1171
MboII GAAGA 4 cut(s) 67, 279, 491, 992
MflI RGATCY 3 cut(s) 329, 625, 1090
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 8 cut(s) 209, 620, 643, 729, 811, 1011, 1162, 1206
MmeI TCCRAC 2 cut(s) 711, 1040
Mph1103I ATGCAT 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 4 cut(s) 212, 261, 641, 1028
MspA1I CMGCKG 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 1027
MspI CCGG 1 cut(s) 719
MspR9I CCNGG 2 cut(s) 188, 720
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 3 cut(s) 126, 416, 425
NciI CCSGG 1 cut(s) 720
NcoI CCATGG 1 cut(s) 608
NdeII GATC 8 cut(s) 220, 329, 481, 625, 982, 1090, 1116, 1171
NlaIII CATG 6 cut(s) 48, 52, 385, 612, 728, 938
NlaIV GGNNCC 3 cut(s) 472, 1143, 1225
NsiI ATGCAT 1 cut(s) 50
NspI RCATGY 2 cut(s) 48, 728
PaeI GCATGC 1 cut(s) 48
PceI AGGCCT 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 80
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 4 cut(s) 7, 859, 875, 887
PflFI GACNNNGTC 1 cut(s) 673
PkrI GCNGC 6 cut(s) 43, 497, 500, 852, 922, 1182
PpuMI RGGWCCY 1 cut(s) 1224
Psp5II RGGWCCY 1 cut(s) 1224
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 472, 1143, 1225
PspPI GGNCC 3 cut(s) 669, 950, 1224
PspPPI RGGWCCY 1 cut(s) 1224
PsuI RGATCY 3 cut(s) 329, 625, 1090
PsyI GACNNNGTC 1 cut(s) 673
SacII CCGCGG 1 cut(s) 477
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 4 cut(s) 212, 261, 641, 1028
SatI GCNGC 6 cut(s) 42, 496, 499, 851, 921, 1181
Sau3AI GATC 8 cut(s) 220, 329, 481, 625, 982, 1090, 1116, 1171
Sau96I GGNCC 3 cut(s) 669, 950, 1224
ScrFI CCNGG 2 cut(s) 188, 720
SduI GDGCHC 1 cut(s) 283
SfaNI GCATC 3 cut(s) 437, 907, 1199
Sfr303I CCGCGG 1 cut(s) 477
SgrBI CCGCGG 1 cut(s) 477
SinI GGWCC 3 cut(s) 669, 950, 1224
SmlI CTYRAG 1 cut(s) 1027
SmoI CTYRAG 1 cut(s) 1027
SphI GCATGC 1 cut(s) 48
Sse9I AATT 8 cut(s) 209, 620, 643, 729, 811, 1011, 1162, 1206
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 3 cut(s) 474, 476, 600
SspMI CTAG 4 cut(s) 158, 564, 1088, 1098
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 2 cut(s) 186, 718
StyI CCWWGG 2 cut(s) 608, 694
TaaI ACNGT 1 cut(s) 835
TaiI ACGT 1 cut(s) 116
TaqI TCGA 2 cut(s) 785, 862
TasI AATT 8 cut(s) 209, 620, 643, 729, 811, 1011, 1162, 1206
TfiI GAWTC 4 cut(s) 7, 859, 875, 887
Tru1I TTAA 4 cut(s) 212, 261, 641, 1028
Tru9I TTAA 4 cut(s) 212, 261, 641, 1028
TscAI CASTG 4 cut(s) 18, 207, 742, 1143
TseI GCWGC 6 cut(s) 41, 495, 498, 850, 920, 1180
TspDTI ATGAA 4 cut(s) 473, 951, 1011, 1051
TspRI CASTG 4 cut(s) 18, 207, 742, 1143
Tth111I GACNNNGTC 1 cut(s) 673
Vha464I CTTAAG 1 cut(s) 1027
VneI GTGCAC 1 cut(s) 279
VpaK11BI GGWCC 3 cut(s) 669, 950, 1224
XapI RAATTY 1 cut(s) 1011
XceI RCATGY 2 cut(s) 48, 728
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 4 cut(s) 158, 564, 1088, 1098
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.