Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001656

Physical Location & Seq

Genomic Coordinates Forward (+)

21505286 .. 21508393

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19880.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAGCTCCAACTCAACTGGTACTCTTGATGAATTCGCACGAAATAAGAGCCAGGATTCGCCTGAGCATTCATATGAGCGAACTGCTAATAAATATATGAACAATGAAGTTGAAATAATAGAAGGGAAAGCTGATCTGTGGACGCCCTTAAACTGTCTCGTAGAGGCTGCTAACCGAACCAAGTCCTCGAAGCCAAATTCACAAGGGTTGCATGCCAAGTCTGATCCAATCAATTCCCTTGAGAGTGAACTTTATATGTCTCAAATTAAGGCAGAAGGAGAATTGCCAAATGCTCTGGACTGCATCAGGAATGCATATACGCCCAAAACCAAAAAAAAGGAGGCCGACCAGAAGGCAAGAGGAAAAAATAACAGTAACGGAACAGGGGCATCAGGACTAGTGAAACGTAAAAGGGTGCGCACAGCTAATCAGAACAGGGTAGCTGCATCCGGGGAATCAAGTGTCTCAACTCAACCTATGCTAGATACATGTGGGGCTAAGTATAGAAATGTTCCTGTTTGGTTCTCCTTGGTTGCATCTGAAGACTGGAAGGGAGAAATTTCATTGCCACAGATATCAGCATGTTGCTTGAAAATAAAGGATGGTAAAATGCCCGTATCAACAATCCAGAAGTACCTTGCAATGAAACTTGAACTTAGCAGTGAAAATGAGGTGGAGATACTGTGTCGGGGTCAGCCGGTACATCCAACATGGCAACTAGAATCCCTAGTAGAGTTGTGGTGCCGAACAGCGCCAACAACAAAAAAAATACCGGTAACAGTTGGCTCCTCTGCTAAAGATTTTGTGATGGTCCTCAATTATTGTCGTAGGGTTCAAACTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

282

Amino Acids

31.13

Weight (kDa)

9.01

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580
fragaria_vesca	FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710
malus_domestica	MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1
prunus_persica	Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1
pyrus_communis	pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160
rosa_chinensis	RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351
rosa_laevigata	RLG00000012310 RLG00000025707
rosa_multiflora	Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428390 Rroxscaffold_7G00179330
rosa_rugosa	Rorug02G0629900 Rorug02G0630000 Rorug06G0202900
rosa_samantha	Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200
rosa_wichuraiana	Rw3G002380 Rw6G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	419
AccB1I	GGYRCC	1 cut(s)	741
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	3 cut(s)	32, 196, 558
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	3 cut(s)	22, 635, 702
AflIII	ACRYGT	1 cut(s)	488
AgeI	ACCGGT	1 cut(s)	772
AgsI	TTSAA	4 cut(s)	113, 592, 653, 836
AhlI	ACTAGT	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	4 cut(s)	6, 131, 425, 443
AluI	AGCT	4 cut(s)	6, 131, 425, 443
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	161, 264, 469
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	2 cut(s)	167, 443
ApoI	RAATTY	3 cut(s)	32, 196, 558
AsiGI	ACCGGT	1 cut(s)	772
AspLEI	GCGC	2 cut(s)	420, 754
AspS9I	GGNCC	1 cut(s)	811
AsuC2I	CCSGG	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	811
BanI	GGYRCC	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	154, 430
BccI	CCATC	2 cut(s)	596, 802
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	3 cut(s)	161, 264, 469
BcuI	ACTAGT	1 cut(s)	397
BfaI	CTAG	4 cut(s)	398, 482, 719, 728
BfoI	RGCGCY	1 cut(s)	755
BisI	GCNGC	2 cut(s)	168, 444
BlsI	GCNGC	2 cut(s)	169, 445
Bme1390I	CCNGG	2 cut(s)	53, 451
Bme18I	GGWCC	1 cut(s)	811
BmgT120I	GGNCC	1 cut(s)	811
BmiI	GGNNCC	2 cut(s)	743, 787
BmrFI	CCNGG	2 cut(s)	53, 451
BmsI	GCATC	4 cut(s)	312, 398, 455, 545
BpiI	GAAGAC	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	451
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	450, 528
BsaWI	WCCGGW	1 cut(s)	772
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bse118I	RCCGGY	2 cut(s)	697, 772
Bse1I	ACTGG	2 cut(s)	22, 551
Bse3DI	GCAATG	2 cut(s)	563, 648
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	450, 528
BseGI	GGATG	3 cut(s)	446, 607, 703
BseMI	GCAATG	2 cut(s)	563, 648
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	22, 551
BseRI	GAGGAG	1 cut(s)	778
BseXI	GCAGC	2 cut(s)	154, 430
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	1 cut(s)	741
BshTI	ACCGGT	1 cut(s)	772
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	450, 698, 773
BsmAI	GTCTC	3 cut(s)	161, 264, 469
BsmI	GAATGC	2 cut(s)	67, 316
BsnI	GGCC	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	133, 223
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	743, 787
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	741
BsrDI	GCAATG	2 cut(s)	563, 648
BsrFI	RCCGGY	2 cut(s)	697, 772
BsrI	ACTGG	2 cut(s)	22, 551
BssAI	RCCGGY	2 cut(s)	697, 772
BssECI	CCNNGG	2 cut(s)	450, 528
BssMI	GATC	2 cut(s)	133, 223
BssNI	GRCGYC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	4 cut(s)	155, 374, 684, 781
BstACI	GRCGYC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	3 cut(s)	63, 498, 656
BstF5I	GGATG	3 cut(s)	446, 607, 703
BstH2I	RGCGCY	1 cut(s)	755
BstHHI	GCGC	2 cut(s)	420, 754
BstKTI	GATC	2 cut(s)	136, 226
BstMAI	GTCTC	3 cut(s)	161, 264, 469
BstMBI	GATC	2 cut(s)	133, 223
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	3 cut(s)	215, 492, 585
BstSCI	CCNGG	2 cut(s)	51, 449
BstV1I	GCAGC	2 cut(s)	154, 430
BstV2I	GAAGAC	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	344
BtsCI	GGATG	3 cut(s)	446, 607, 703
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	2 cut(s)	420, 754
Cfr10I	RCCGGY	2 cut(s)	697, 772
Cfr13I	GGNCC	1 cut(s)	811
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	21, 634, 701
CspAI	ACCGGT	1 cut(s)	772
CviAII	CATG	5 cut(s)	212, 489, 582, 711, 843
CviQI	GTAC	3 cut(s)	21, 634, 701
DdeI	CTNAG	3 cut(s)	63, 498, 656
DpnI	GATC	2 cut(s)	135, 225
DpnII	GATC	2 cut(s)	133, 223
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	811
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	561
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	51
EcoRV	GATATC	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	528
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	5 cut(s)	215, 492, 585, 714, 846
FatI	CATG	5 cut(s)	211, 488, 581, 710, 842
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	168, 444
FokI	GGATG	3 cut(s)	433, 614, 690
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	168, 444
FspAI	RTGCGCAY	1 cut(s)	419
FspBI	CTAG	4 cut(s)	398, 482, 719, 728
FspI	TGCGCA	1 cut(s)	419
GlaI	GCGC	2 cut(s)	419, 753
GluI	GCNGC	2 cut(s)	168, 444
HaeII	RGCGCY	1 cut(s)	755
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	3 cut(s)	450, 698, 773
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	2 cut(s)	420, 754
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	5 cut(s)	215, 492, 585, 714, 846
Hin6I	GCGC	2 cut(s)	418, 752
HinP1I	GCGC	2 cut(s)	418, 752
HinfI	GANTC	3 cut(s)	56, 455, 722
HpaII	CCGG	3 cut(s)	450, 698, 773
Hpy166II	GTNNAC	2 cut(s)	141, 248
Hpy188I	TCNGA	3 cut(s)	223, 432, 541
Hpy188III	TCNNGA	5 cut(s)	26, 296, 307, 393, 628
Hpy8I	GTNNAC	2 cut(s)	141, 248
HpyAV	CCTTC	4 cut(s)	116, 269, 346, 544
HpyCH4III	ACNGT	4 cut(s)	155, 374, 684, 781
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	6 cut(s)	211, 303, 314, 446, 536, 641
HpyF3I	CTNAG	3 cut(s)	63, 498, 656
HpySE526I	ACGT	1 cut(s)	406
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	5 cut(s)	215, 492, 585, 714, 846
HspAI	GCGC	2 cut(s)	418, 752
Kzo9I	GATC	2 cut(s)	133, 223
LmnI	GCTCC	2 cut(s)	11, 791
Lsp1109I	GCAGC	2 cut(s)	154, 430
LweI	GCATC	4 cut(s)	312, 398, 455, 545
MaeI	CTAG	4 cut(s)	398, 482, 719, 728
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	374, 775
MalI	GATC	2 cut(s)	135, 225
MboI	GATC	2 cut(s)	133, 223
MboII	GAAGA	1 cut(s)	554
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	7 cut(s)	32, 196, 232, 264, 281, 558, 817
MmeI	TCCRAC	2 cut(s)	33, 731
MnlI	CCTC	7 cut(s)	157, 196, 334, 353, 664, 799, 824
Mph1103I	ATGCAT	1 cut(s)	316
MseI	TTAA	2 cut(s)	149, 267
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	3 cut(s)	450, 698, 773
MspR9I	CCNGG	2 cut(s)	53, 451
Mva1269I	GAATGC	2 cut(s)	67, 316
MvaI	CCWGG	1 cut(s)	53
NciI	CCSGG	1 cut(s)	451
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	2 cut(s)	133, 223
NlaIII	CATG	5 cut(s)	215, 492, 585, 714, 846
NlaIV	GGNNCC	2 cut(s)	743, 787
NsbI	TGCGCA	1 cut(s)	419
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	3 cut(s)	215, 492, 585
PaeI	GCATGC	1 cut(s)	215
PciI	ACATGT	1 cut(s)	488
PctI	GAATGC	2 cut(s)	67, 316
PfeI	GAWTC	3 cut(s)	56, 455, 722
PinAI	ACCGGT	1 cut(s)	772
PkrI	GCNGC	2 cut(s)	169, 445
PscI	ACATGT	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	743, 787
PspPI	GGNCC	1 cut(s)	811
RsaI	GTAC	3 cut(s)	22, 635, 702
RsaNI	GTAC	3 cut(s)	21, 634, 701
RseI	CAYNNNNRTG	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	149, 267
SatI	GCNGC	2 cut(s)	168, 444
Sau3AI	GATC	2 cut(s)	133, 223
Sau96I	GGNCC	1 cut(s)	811
ScrFI	CCNGG	2 cut(s)	53, 451
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	8, 133, 409, 427, 445, 478, 639, 675
SfaNI	GCATC	4 cut(s)	312, 398, 455, 545
SinI	GGWCC	1 cut(s)	811
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SpeI	ACTAGT	1 cut(s)	397
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	7 cut(s)	32, 196, 232, 264, 281, 558, 817
SspMI	CTAG	4 cut(s)	398, 482, 719, 728
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	51, 449
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	4 cut(s)	155, 374, 684, 781
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	188
TasI	AATT	7 cut(s)	32, 196, 232, 264, 281, 558, 817
TfiI	GAWTC	3 cut(s)	56, 455, 722
Tru1I	TTAA	2 cut(s)	149, 267
Tru9I	TTAA	2 cut(s)	149, 267
TscAI	CASTG	1 cut(s)	667
TseI	GCWGC	2 cut(s)	167, 443
TspDTI	ATGAA	6 cut(s)	45, 60, 113, 120, 552, 659
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	811
XapI	RAATTY	3 cut(s)	32, 196, 558
XceI	RCATGY	3 cut(s)	215, 492, 585
XspI	CTAG	4 cut(s)	398, 482, 719, 728
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.