E3 ubiquitin protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580 |
| fragaria_vesca | FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710 |
| malus_domestica | MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1 |
| prunus_persica | Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1 |
| pyrus_communis | pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160 |
| rosa_chinensis | RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351 |
| rosa_laevigata | RLG00000012310 RLG00000025707 |
| rosa_multiflora | Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00428390 Rroxscaffold_7G00179330 |
| rosa_rugosa | Rorug02G0629900 Rorug02G0630000 Rorug06G0202900 |
| rosa_samantha | Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200 |
| rosa_wichuraiana | Rw3G002380 Rw6G027130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 280 |
| AccI | GTMKAC | 1 cut(s) | 1179 |
| AccII | CGCG | 1 cut(s) | 488 |
| AciI | CCGC | 5 cut(s) | 59, 312, 486, 488, 1016 |
| AclWI | GGATC | 2 cut(s) | 445, 645 |
| AcsI | RAATTY | 3 cut(s) | 161, 655, 1020 |
| AcuI | CTGAAG | 4 cut(s) | 61, 282, 306, 1011 |
| AcyI | GRCGYC | 1 cut(s) | 84 |
| AfaI | GTAC | 3 cut(s) | 198, 588, 1082 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 883 |
| AflII | CTTAAG | 1 cut(s) | 1036 |
| AgeI | ACCGGT | 1 cut(s) | 730 |
| AgsI | TTSAA | 1 cut(s) | 455 |
| AjnI | CCWGG | 2 cut(s) | 372, 996 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 942, 974 |
| AluBI | AGCT | 8 cut(s) | 73, 302, 407, 513, 862, 920, 986, 1115 |
| AluI | AGCT | 8 cut(s) | 73, 302, 407, 513, 862, 920, 986, 1115 |
| Alw26I | GTCTC | 4 cut(s) | 26, 75, 693, 1285 |
| AlwI | GGATC | 2 cut(s) | 445, 645 |
| Ama87I | CYCGRG | 1 cut(s) | 518 |
| AoxI | GGCC | 3 cut(s) | 215, 458, 522 |
| ApeKI | GCWGC | 2 cut(s) | 862, 932 |
| ApoI | RAATTY | 3 cut(s) | 161, 655, 1020 |
| AsiGI | ACCGGT | 1 cut(s) | 730 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 105, 421 |
| AspS9I | GGNCC | 3 cut(s) | 681, 962, 1233 |
| AsuHPI | GGTGA | 6 cut(s) | 28, 507, 626, 903, 1096, 1194 |
| AsuII | TTCGAA | 1 cut(s) | 763 |
| AvaI | CYCGRG | 1 cut(s) | 518 |
| AvaII | GGWCC | 3 cut(s) | 681, 962, 1233 |
| BaeGI | GKGCMC | 2 cut(s) | 283, 1062 |
| BanI | GGYRCC | 1 cut(s) | 280 |
| BbsI | GAAGAC | 1 cut(s) | 999 |
| BbvI | GCAGC | 2 cut(s) | 849, 944 |
| BccI | CCATC | 3 cut(s) | 101, 1043, 1249 |
| BciT130I | CCWGG | 2 cut(s) | 374, 998 |
| BcoDI | GTCTC | 4 cut(s) | 26, 75, 693, 1285 |
| BfaI | CTAG | 4 cut(s) | 158, 315, 441, 576 |
| BfrI | CTTAAG | 1 cut(s) | 1036 |
| BglII | AGATCT | 2 cut(s) | 329, 1099 |
| BisI | GCNGC | 4 cut(s) | 486, 863, 933, 1016 |
| BlsI | GCNGC | 4 cut(s) | 487, 864, 934, 1017 |
| Bme1390I | CCNGG | 2 cut(s) | 374, 998 |
| Bme18I | GGWCC | 3 cut(s) | 681, 962, 1233 |
| BmeT110I | CYCGRG | 1 cut(s) | 518 |
| BmgT120I | GGNCC | 3 cut(s) | 681, 962, 1233 |
| BmiI | GGNNCC | 3 cut(s) | 282, 1152, 1234 |
| BmrFI | CCNGG | 2 cut(s) | 374, 998 |
| BmsI | GCATC | 2 cut(s) | 919, 1232 |
| BpiI | GAAGAC | 1 cut(s) | 999 |
| BpmI | CTGGAG | 2 cut(s) | 224, 822 |
| Bpu14I | TTCGAA | 1 cut(s) | 763 |
| Bsa29I | ATCGAT | 1 cut(s) | 183 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1124 |
| BsaHI | GRCGYC | 1 cut(s) | 84 |
| BsaI | GGTCTC | 1 cut(s) | 1285 |
| BsaJI | CCNNGG | 3 cut(s) | 372, 486, 519 |
| BsaWI | WCCGGW | 1 cut(s) | 730 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 883 |
| Bse118I | RCCGGY | 1 cut(s) | 730 |
| Bse1I | ACTGG | 4 cut(s) | 207, 394, 747, 1145 |
| Bse3DI | GCAATG | 1 cut(s) | 1157 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1124 |
| BseBI | CCWGG | 2 cut(s) | 374, 998 |
| BseCI | ATCGAT | 1 cut(s) | 183 |
| BseDI | CCNNGG | 3 cut(s) | 372, 486, 519 |
| BseGI | GGATG | 5 cut(s) | 496, 814, 934, 1071, 1223 |
| BseJI | GATNNNNATC | 1 cut(s) | 1124 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 883 |
| BseMI | GCAATG | 1 cut(s) | 1157 |
| BseMII | CTCAG | 3 cut(s) | 594, 770, 1107 |
| BseNI | ACTGG | 4 cut(s) | 207, 394, 747, 1145 |
| BseSI | GKGCMC | 2 cut(s) | 283, 1062 |
| BseXI | GCAGC | 2 cut(s) | 849, 944 |
| Bsh1236I | CGCG | 1 cut(s) | 488 |
| BshFI | GGCC | 3 cut(s) | 217, 460, 524 |
| BshNI | GGYRCC | 1 cut(s) | 280 |
| BshTI | ACCGGT | 1 cut(s) | 730 |
| BshVI | ATCGAT | 1 cut(s) | 183 |
| BsiHKCI | CYCGRG | 1 cut(s) | 518 |
| BsiSI | CCGG | 1 cut(s) | 731 |
| BslFI | GGGAC | 1 cut(s) | 1152 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 883 |
| BsmAI | GTCTC | 4 cut(s) | 26, 75, 693, 1285 |
| BsmBI | CGTCTC | 1 cut(s) | 75 |
| BsmFI | GGGAC | 1 cut(s) | 1152 |
| BsmI | GAATGC | 1 cut(s) | 107 |
| BsnI | GGCC | 3 cut(s) | 217, 460, 524 |
| Bso31I | GGTCTC | 1 cut(s) | 1285 |
| BsoBI | CYCGRG | 1 cut(s) | 518 |
| Bsp119I | TTCGAA | 1 cut(s) | 763 |
| Bsp1286I | GDGCHC | 2 cut(s) | 283, 1062 |
| Bsp143I | GATC | 7 cut(s) | 184, 329, 437, 493, 637, 1099, 1125 |
| BspACI | CCGC | 5 cut(s) | 59, 312, 486, 488, 1016 |
| BspANI | GGCC | 3 cut(s) | 217, 460, 524 |
| BspCNI | CTCAG | 3 cut(s) | 595, 769, 1108 |
| BspDI | ATCGAT | 1 cut(s) | 183 |
| BspFNI | CGCG | 1 cut(s) | 488 |
| BspLI | GGNNCC | 3 cut(s) | 282, 1152, 1234 |
| BspPI | GGATC | 2 cut(s) | 445, 645 |
| BspQI | GCTCTTC | 1 cut(s) | 80 |
| BspT104I | TTCGAA | 1 cut(s) | 763 |
| BspT107I | GGYRCC | 1 cut(s) | 280 |
| BspTI | CTTAAG | 1 cut(s) | 1036 |
| BspTNI | GGTCTC | 1 cut(s) | 1285 |
| BsrDI | GCAATG | 1 cut(s) | 1157 |
| BsrFI | RCCGGY | 1 cut(s) | 730 |
| BsrI | ACTGG | 4 cut(s) | 207, 394, 747, 1145 |
| BssAI | RCCGGY | 1 cut(s) | 730 |
| BssECI | CCNNGG | 3 cut(s) | 372, 486, 519 |
| BssMI | GATC | 7 cut(s) | 184, 329, 437, 493, 637, 1099, 1125 |
| BssNI | GRCGYC | 1 cut(s) | 84 |
| Bst2UI | CCWGG | 2 cut(s) | 374, 998 |
| Bst4CI | ACNGT | 2 cut(s) | 227, 847 |
| Bst6I | CTCTTC | 3 cut(s) | 20, 80, 949 |
| BstACI | GRCGYC | 1 cut(s) | 84 |
| BstAFI | CTTAAG | 1 cut(s) | 1036 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 126 |
| BstBI | TTCGAA | 1 cut(s) | 763 |
| BstC8I | GCNNGC | 2 cut(s) | 46, 1263 |
| BstDEI | CTNAG | 6 cut(s) | 246, 603, 756, 855, 1116, 1174 |
| BstDSI | CCRYGG | 1 cut(s) | 486 |
| BstF5I | GGATG | 5 cut(s) | 496, 814, 934, 1071, 1223 |
| BstFNI | CGCG | 1 cut(s) | 488 |
| BstKTI | GATC | 7 cut(s) | 187, 332, 440, 496, 640, 1102, 1128 |
| BstMAI | GTCTC | 4 cut(s) | 26, 75, 693, 1285 |
| BstMBI | GATC | 7 cut(s) | 184, 329, 437, 493, 637, 1099, 1125 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 126, 419, 859 |
| BstNI | CCWGG | 2 cut(s) | 374, 998 |
| BstNSI | RCATGY | 2 cut(s) | 48, 740 |
| BstSCI | CCNGG | 2 cut(s) | 372, 996 |
| BstSLI | GKGCMC | 2 cut(s) | 283, 1062 |
| BstUI | CGCG | 1 cut(s) | 488 |
| BstV1I | GCAGC | 2 cut(s) | 849, 944 |
| BstV2I | GAAGAC | 1 cut(s) | 999 |
| BstX2I | RGATCY | 4 cut(s) | 329, 437, 637, 1099 |
| BstYI | RGATCY | 4 cut(s) | 329, 437, 637, 1099 |
| Bsu15I | ATCGAT | 1 cut(s) | 183 |
| BsuRI | GGCC | 3 cut(s) | 217, 460, 524 |
| BsuTUI | ATCGAT | 1 cut(s) | 183 |
| BtgI | CCRYGG | 1 cut(s) | 486 |
| BtsCI | GGATG | 5 cut(s) | 496, 814, 934, 1071, 1223 |
| BtsIMutI | CAGTG | 3 cut(s) | 200, 754, 1152 |
| Cac8I | GCNNGC | 2 cut(s) | 46, 1263 |
| Cfr10I | RCCGGY | 1 cut(s) | 730 |
| Cfr13I | GGNCC | 3 cut(s) | 681, 962, 1233 |
| Cfr42I | CCGCGG | 1 cut(s) | 489 |
| ClaI | ATCGAT | 1 cut(s) | 183 |
| CseI | GACGC | 1 cut(s) | 92 |
| Csp6I | GTAC | 3 cut(s) | 197, 587, 1081 |
| CspAI | ACCGGT | 1 cut(s) | 730 |
| CviAII | CATG | 6 cut(s) | 45, 49, 382, 737, 947, 1135 |
| CviQI | GTAC | 3 cut(s) | 197, 587, 1081 |
| DdeI | CTNAG | 6 cut(s) | 246, 603, 756, 855, 1116, 1174 |
| DpnI | GATC | 7 cut(s) | 186, 331, 439, 495, 639, 1101, 1127 |
| DpnII | GATC | 7 cut(s) | 184, 329, 437, 493, 637, 1099, 1125 |
| Eam1104I | CTCTTC | 3 cut(s) | 20, 80, 949 |
| EarI | CTCTTC | 3 cut(s) | 20, 80, 949 |
| Eco147I | AGGCCT | 2 cut(s) | 460, 524 |
| Eco31I | GGTCTC | 1 cut(s) | 1285 |
| Eco47I | GGWCC | 3 cut(s) | 681, 962, 1233 |
| Eco57I | CTGAAG | 4 cut(s) | 61, 282, 306, 1011 |
| Eco88I | CYCGRG | 1 cut(s) | 518 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1233 |
| EcoRI | GAATTC | 1 cut(s) | 161 |
| EcoRII | CCWGG | 2 cut(s) | 372, 996 |
| EcoT22I | ATGCAT | 2 cut(s) | 50, 1136 |
| Esp3I | CGTCTC | 1 cut(s) | 75 |
| FaeI | CATG | 6 cut(s) | 48, 52, 385, 740, 950, 1138 |
| FaqI | GGGAC | 1 cut(s) | 1152 |
| FatI | CATG | 6 cut(s) | 44, 48, 381, 736, 946, 1134 |
| FauI | CCCGC | 1 cut(s) | 319 |
| FblI | GTMKAC | 1 cut(s) | 1179 |
| Fnu4HI | GCNGC | 4 cut(s) | 486, 863, 933, 1016 |
| FokI | GGATG | 5 cut(s) | 483, 821, 941, 1058, 1210 |
| Fsp4HI | GCNGC | 4 cut(s) | 486, 863, 933, 1016 |
| FspBI | CTAG | 4 cut(s) | 158, 315, 441, 576 |
| GluI | GCNGC | 4 cut(s) | 486, 863, 933, 1016 |
| GsuI | CTGGAG | 2 cut(s) | 224, 822 |
| HaeIII | GGCC | 3 cut(s) | 217, 460, 524 |
| HapII | CCGG | 1 cut(s) | 731 |
| HgaI | GACGC | 1 cut(s) | 92 |
| Hin1I | GRCGYC | 1 cut(s) | 84 |
| Hin1II | CATG | 6 cut(s) | 48, 52, 385, 740, 950, 1138 |
| HincII | GTYRAC | 2 cut(s) | 369, 1180 |
| HindII | GTYRAC | 2 cut(s) | 369, 1180 |
| HinfI | GANTC | 4 cut(s) | 7, 479, 752, 899 |
| HpaII | CCGG | 1 cut(s) | 731 |
| HphI | GGTGA | 6 cut(s) | 28, 507, 626, 903, 1096, 1194 |
| Hpy166II | GTNNAC | 3 cut(s) | 197, 369, 1180 |
| Hpy188I | TCNGA | 5 cut(s) | 80, 100, 148, 715, 991 |
| Hpy188III | TCNNGA | 5 cut(s) | 500, 839, 926, 1075, 1272 |
| Hpy8I | GTNNAC | 3 cut(s) | 197, 369, 1180 |
| HpyAV | CCTTC | 5 cut(s) | 116, 306, 387, 620, 1215 |
| HpyCH4III | ACNGT | 2 cut(s) | 227, 847 |
| HpyCH4IV | ACGT | 2 cut(s) | 113, 1056 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 126, 419, 859 |
| HpyF3I | CTNAG | 6 cut(s) | 246, 603, 756, 855, 1116, 1174 |
| HpySE526I | ACGT | 2 cut(s) | 113, 1056 |
| Hsp92I | GRCGYC | 1 cut(s) | 84 |
| Hsp92II | CATG | 6 cut(s) | 48, 52, 385, 740, 950, 1138 |
| KspI | CCGCGG | 1 cut(s) | 489 |
| Kzo9I | GATC | 7 cut(s) | 184, 329, 437, 493, 637, 1099, 1125 |
| LguI | GCTCTTC | 1 cut(s) | 80 |
| Lsp1109I | GCAGC | 2 cut(s) | 849, 944 |
| LweI | GCATC | 2 cut(s) | 919, 1232 |
| MaeI | CTAG | 4 cut(s) | 158, 315, 441, 576 |
| MaeII | ACGT | 2 cut(s) | 113, 1056 |
| MalI | GATC | 7 cut(s) | 186, 331, 439, 495, 639, 1101, 1127 |
| MboI | GATC | 7 cut(s) | 184, 329, 437, 493, 637, 1099, 1125 |
| MboII | GAAGA | 9 cut(s) | 37, 67, 279, 330, 488, 503, 966, 1004, 1013 |
| MflI | RGATCY | 4 cut(s) | 329, 437, 637, 1099 |
| MhlI | GDGCHC | 2 cut(s) | 283, 1062 |
| MnlI | CCTC | 9 cut(s) | 21, 145, 466, 514, 535, 799, 876, 1083, 1246 |
| Mph1103I | ATGCAT | 2 cut(s) | 50, 1136 |
| MroXI | GAANNNNTTC | 2 cut(s) | 105, 421 |
| MseI | TTAA | 5 cut(s) | 212, 261, 594, 653, 1037 |
| MspA1I | CMGCKG | 1 cut(s) | 488 |
| MspCI | CTTAAG | 1 cut(s) | 1036 |
| MspI | CCGG | 1 cut(s) | 731 |
| MspR9I | CCNGG | 2 cut(s) | 374, 998 |
| Mva1269I | GAATGC | 1 cut(s) | 107 |
| MvaI | CCWGG | 2 cut(s) | 374, 998 |
| MvnI | CGCG | 1 cut(s) | 488 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 126, 419, 859 |
| NdeII | GATC | 7 cut(s) | 184, 329, 437, 493, 637, 1099, 1125 |
| NlaIII | CATG | 6 cut(s) | 48, 52, 385, 740, 950, 1138 |
| NlaIV | GGNNCC | 3 cut(s) | 282, 1152, 1234 |
| NmeAIII | GCCGAG | 1 cut(s) | 595 |
| NsiI | ATGCAT | 2 cut(s) | 50, 1136 |
| NspI | RCATGY | 2 cut(s) | 48, 740 |
| NspV | TTCGAA | 1 cut(s) | 763 |
| PaeI | GCATGC | 1 cut(s) | 48 |
| PceI | AGGCCT | 2 cut(s) | 460, 524 |
| PciSI | GCTCTTC | 1 cut(s) | 80 |
| PctI | GAATGC | 1 cut(s) | 107 |
| PdmI | GAANNNNTTC | 2 cut(s) | 105, 421 |
| PfeI | GAWTC | 4 cut(s) | 7, 479, 752, 899 |
| PflFI | GACNNNGTC | 1 cut(s) | 685 |
| PinAI | ACCGGT | 1 cut(s) | 730 |
| PkrI | GCNGC | 4 cut(s) | 487, 864, 934, 1017 |
| PpuMI | RGGWCCY | 1 cut(s) | 1233 |
| Psp5II | RGGWCCY | 1 cut(s) | 1233 |
| Psp6I | CCWGG | 2 cut(s) | 372, 996 |
| PspGI | CCWGG | 2 cut(s) | 372, 996 |
| PspN4I | GGNNCC | 3 cut(s) | 282, 1152, 1234 |
| PspPI | GGNCC | 3 cut(s) | 681, 962, 1233 |
| PspPPI | RGGWCCY | 1 cut(s) | 1233 |
| PsuI | RGATCY | 4 cut(s) | 329, 437, 637, 1099 |
| PsyI | GACNNNGTC | 1 cut(s) | 685 |
| RsaI | GTAC | 3 cut(s) | 198, 588, 1082 |
| RsaNI | GTAC | 3 cut(s) | 197, 587, 1081 |
| SacII | CCGCGG | 1 cut(s) | 489 |
| SalI | GTCGAC | 1 cut(s) | 1178 |
| SapI | GCTCTTC | 1 cut(s) | 80 |
| SaqAI | TTAA | 5 cut(s) | 212, 261, 594, 653, 1037 |
| SatI | GCNGC | 4 cut(s) | 486, 863, 933, 1016 |
| Sau3AI | GATC | 7 cut(s) | 184, 329, 437, 493, 637, 1099, 1125 |
| Sau96I | GGNCC | 3 cut(s) | 681, 962, 1233 |
| ScrFI | CCNGG | 2 cut(s) | 374, 998 |
| SduI | GDGCHC | 2 cut(s) | 283, 1062 |
| SfaNI | GCATC | 2 cut(s) | 919, 1232 |
| Sfr303I | CCGCGG | 1 cut(s) | 489 |
| SfuI | TTCGAA | 1 cut(s) | 763 |
| SgrBI | CCGCGG | 1 cut(s) | 489 |
| SinI | GGWCC | 3 cut(s) | 681, 962, 1233 |
| SmlI | CTYRAG | 1 cut(s) | 1036 |
| SmoI | CTYRAG | 1 cut(s) | 1036 |
| SphI | GCATGC | 1 cut(s) | 48 |
| SseBI | AGGCCT | 2 cut(s) | 460, 524 |
| SsiI | CCGC | 5 cut(s) | 59, 312, 486, 488, 1016 |
| SspMI | CTAG | 4 cut(s) | 158, 315, 441, 576 |
| StuI | AGGCCT | 2 cut(s) | 460, 524 |
| StyD4I | CCNGG | 2 cut(s) | 372, 996 |
| TaaI | ACNGT | 2 cut(s) | 227, 847 |
| TaiI | ACGT | 2 cut(s) | 116, 1059 |
| TaqI | TCGA | 4 cut(s) | 183, 763, 1179, 1273 |
| TauI | GCSGC | 2 cut(s) | 488, 1018 |
| TfiI | GAWTC | 4 cut(s) | 7, 479, 752, 899 |
| Tru1I | TTAA | 5 cut(s) | 212, 261, 594, 653, 1037 |
| Tru9I | TTAA | 5 cut(s) | 212, 261, 594, 653, 1037 |
| TscAI | CASTG | 3 cut(s) | 207, 754, 1152 |
| TseI | GCWGC | 2 cut(s) | 862, 932 |
| TspDTI | ATGAA | 6 cut(s) | 98, 825, 963, 1020, 1060, 1125 |
| TspRI | CASTG | 3 cut(s) | 207, 754, 1152 |
| Tth111I | GACNNNGTC | 1 cut(s) | 685 |
| Vha464I | CTTAAG | 1 cut(s) | 1036 |
| VpaK11BI | GGWCC | 3 cut(s) | 681, 962, 1233 |
| XapI | RAATTY | 3 cut(s) | 161, 655, 1020 |
| XceI | RCATGY | 2 cut(s) | 48, 740 |
| XmiI | GTMKAC | 1 cut(s) | 1179 |
| XmnI | GAANNNNTTC | 2 cut(s) | 105, 421 |
| XspI | CTAG | 4 cut(s) | 158, 315, 441, 576 |
| Zsp2I | ATGCAT | 2 cut(s) | 50, 1136 |