Prupe.8G231300_v2.0.a1

E3 ubiquitin protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
20602469 .. 20606683
4215 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G231300.1

Sequence Viewer

Length: 1293 bp
ATGCCGAATCAGGTGGTGAAAGTGAAGAGGGAGACAATTACAGCATGCATGACTTGTCCGCTTTGCCATAAGCTCTTCAGAGACGCCACCACCATCTCTGAATGCCTTCATACGTTTTGCAGGAAGTGCATATATAGTAAGATTTCGGACGAGGAACTAGAATTCTGTCCAATATGCAATATCGATCTGGGTTGTGTACCACTGGAGAAATTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCTAAGATTTTCCCTTTTAAGAGAAGAAAGGTAAGGGCACCTGAAGTTATGCCTTCAGCTACATTACCCGCTAGAAGAAAGGAGAGATCTCTCTCGTCATTGGTGGTCAGCACTCCCAGAGTGTCAACCCAGGCTACCATGATGACTGGAAGGAGAACTAAAGCTGTTGCGAGAAAGGCTTCTGCTTTACAGGGATCTAGTTTTTTGGTTGAAAGGCCTATAAAGAAAGAGGAAGATTCTGCCGCGGAAGATCATCCAGAGCGTTTCAGCTCACCCGAGGCCTCAAATAAGTCTGGTCAAAATAACAGGCAGAGTTCTTTCTCTGCCGAGCCTAGCAAATCTGTACCCATTAAAGAAACTGAGAATGGTGGTGAAGCAAGGGAAGGGAAATTGGATCTTTGGAAACCATTAAATTTTTTGGTGGAAGTTGCAAATAGGACCAAGTCTCACAAATCCAATTCACAAGGGTCTGATAATAAAGTAGAACCGGTGCATGTTATCGCCAGTGAATCTCAGGTTCGAAAACCCAAAAATAAGGAAAATAAACAGAAATCAAAAGTTGAGGATGAAAAAAATAGCACTTATCCTATCTCTCCAGAAACAGTAAAGCCTAAGAAGCTGCGTAGGGTTCGCCGAAAGAGGGAAGCATTTGGAGAATCAAGCATTTCACCCCAAGCTGTTCTGGATGCAGCCATTGGCAAACATGAAAGAAGAGTTGGTCCAATTTGGTTCTCACTTGTAGCTTCTGAAGACCAGGAAGATGAACCCTTGCCGCAAATTCCTACAAATTACTTAAGAATAAAAGATGGAAACGTGCCCGTTTCGTTCATCCAGAAGTACCTAATGAGGAAGTTAGATCTCACCAATGAAGCTGAGATTGAGATCAAATGCATGGGACAACCAGTGGTTCCCACATTGCAGATGTATAACTTAGTCGACTTGTGGCTACAAACATCATCACCTTCACAACGAATTACTGCATCCATTGGGTCCTCTGCAAAAGATTTTGTGATGGTGCTTGCTTACTCTCGAAAGGTCTCAAACTCCTAA

Protein Analysis

431

Amino Acids

48.36

Weight (kDa)

9.51

Isoelectric Point (pI)

64.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 280
AccI GTMKAC 1 cut(s) 1179
AccII CGCG 1 cut(s) 488
AciI CCGC 5 cut(s) 59, 312, 486, 488, 1016
AclWI GGATC 2 cut(s) 445, 645
AcsI RAATTY 3 cut(s) 161, 655, 1020
AcuI CTGAAG 4 cut(s) 61, 282, 306, 1011
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 3 cut(s) 198, 588, 1082
AfiI CCNNNNNNNGG 1 cut(s) 883
AflII CTTAAG 1 cut(s) 1036
AgeI ACCGGT 1 cut(s) 730
AgsI TTSAA 1 cut(s) 455
AjnI CCWGG 2 cut(s) 372, 996
AjuI GAANNNNNNNTTGG 2 cut(s) 942, 974
AluBI AGCT 8 cut(s) 73, 302, 407, 513, 862, 920, 986, 1115
AluI AGCT 8 cut(s) 73, 302, 407, 513, 862, 920, 986, 1115
Alw26I GTCTC 4 cut(s) 26, 75, 693, 1285
AlwI GGATC 2 cut(s) 445, 645
Ama87I CYCGRG 1 cut(s) 518
AoxI GGCC 3 cut(s) 215, 458, 522
ApeKI GCWGC 2 cut(s) 862, 932
ApoI RAATTY 3 cut(s) 161, 655, 1020
AsiGI ACCGGT 1 cut(s) 730
Asp700I GAANNNNTTC 2 cut(s) 105, 421
AspS9I GGNCC 3 cut(s) 681, 962, 1233
AsuHPI GGTGA 6 cut(s) 28, 507, 626, 903, 1096, 1194
AsuII TTCGAA 1 cut(s) 763
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 3 cut(s) 681, 962, 1233
BaeGI GKGCMC 2 cut(s) 283, 1062
BanI GGYRCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 999
BbvI GCAGC 2 cut(s) 849, 944
BccI CCATC 3 cut(s) 101, 1043, 1249
BciT130I CCWGG 2 cut(s) 374, 998
BcoDI GTCTC 4 cut(s) 26, 75, 693, 1285
BfaI CTAG 4 cut(s) 158, 315, 441, 576
BfrI CTTAAG 1 cut(s) 1036
BglII AGATCT 2 cut(s) 329, 1099
BisI GCNGC 4 cut(s) 486, 863, 933, 1016
BlsI GCNGC 4 cut(s) 487, 864, 934, 1017
Bme1390I CCNGG 2 cut(s) 374, 998
Bme18I GGWCC 3 cut(s) 681, 962, 1233
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 3 cut(s) 681, 962, 1233
BmiI GGNNCC 3 cut(s) 282, 1152, 1234
BmrFI CCNGG 2 cut(s) 374, 998
BmsI GCATC 2 cut(s) 919, 1232
BpiI GAAGAC 1 cut(s) 999
BpmI CTGGAG 2 cut(s) 224, 822
Bpu14I TTCGAA 1 cut(s) 763
Bsa29I ATCGAT 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 1124
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 1285
BsaJI CCNNGG 3 cut(s) 372, 486, 519
BsaWI WCCGGW 1 cut(s) 730
Bsc4I CCNNNNNNNGG 1 cut(s) 883
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 4 cut(s) 207, 394, 747, 1145
Bse3DI GCAATG 1 cut(s) 1157
Bse8I GATNNNNATC 1 cut(s) 1124
BseBI CCWGG 2 cut(s) 374, 998
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 372, 486, 519
BseGI GGATG 5 cut(s) 496, 814, 934, 1071, 1223
BseJI GATNNNNATC 1 cut(s) 1124
BseLI CCNNNNNNNGG 1 cut(s) 883
BseMI GCAATG 1 cut(s) 1157
BseMII CTCAG 3 cut(s) 594, 770, 1107
BseNI ACTGG 4 cut(s) 207, 394, 747, 1145
BseSI GKGCMC 2 cut(s) 283, 1062
BseXI GCAGC 2 cut(s) 849, 944
Bsh1236I CGCG 1 cut(s) 488
BshFI GGCC 3 cut(s) 217, 460, 524
BshNI GGYRCC 1 cut(s) 280
BshTI ACCGGT 1 cut(s) 730
BshVI ATCGAT 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 1 cut(s) 731
BslFI GGGAC 1 cut(s) 1152
BslI CCNNNNNNNGG 1 cut(s) 883
BsmAI GTCTC 4 cut(s) 26, 75, 693, 1285
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 1152
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 3 cut(s) 217, 460, 524
Bso31I GGTCTC 1 cut(s) 1285
BsoBI CYCGRG 1 cut(s) 518
Bsp119I TTCGAA 1 cut(s) 763
Bsp1286I GDGCHC 2 cut(s) 283, 1062
Bsp143I GATC 7 cut(s) 184, 329, 437, 493, 637, 1099, 1125
BspACI CCGC 5 cut(s) 59, 312, 486, 488, 1016
BspANI GGCC 3 cut(s) 217, 460, 524
BspCNI CTCAG 3 cut(s) 595, 769, 1108
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 1 cut(s) 488
BspLI GGNNCC 3 cut(s) 282, 1152, 1234
BspPI GGATC 2 cut(s) 445, 645
BspQI GCTCTTC 1 cut(s) 80
BspT104I TTCGAA 1 cut(s) 763
BspT107I GGYRCC 1 cut(s) 280
BspTI CTTAAG 1 cut(s) 1036
BspTNI GGTCTC 1 cut(s) 1285
BsrDI GCAATG 1 cut(s) 1157
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 4 cut(s) 207, 394, 747, 1145
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 3 cut(s) 372, 486, 519
BssMI GATC 7 cut(s) 184, 329, 437, 493, 637, 1099, 1125
BssNI GRCGYC 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 374, 998
Bst4CI ACNGT 2 cut(s) 227, 847
Bst6I CTCTTC 3 cut(s) 20, 80, 949
BstACI GRCGYC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 1036
BstAPI GCANNNNNTGC 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 46, 1263
BstDEI CTNAG 6 cut(s) 246, 603, 756, 855, 1116, 1174
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 5 cut(s) 496, 814, 934, 1071, 1223
BstFNI CGCG 1 cut(s) 488
BstKTI GATC 7 cut(s) 187, 332, 440, 496, 640, 1102, 1128
BstMAI GTCTC 4 cut(s) 26, 75, 693, 1285
BstMBI GATC 7 cut(s) 184, 329, 437, 493, 637, 1099, 1125
BstMWI GCNNNNNNNGC 3 cut(s) 126, 419, 859
BstNI CCWGG 2 cut(s) 374, 998
BstNSI RCATGY 2 cut(s) 48, 740
BstSCI CCNGG 2 cut(s) 372, 996
BstSLI GKGCMC 2 cut(s) 283, 1062
BstUI CGCG 1 cut(s) 488
BstV1I GCAGC 2 cut(s) 849, 944
BstV2I GAAGAC 1 cut(s) 999
BstX2I RGATCY 4 cut(s) 329, 437, 637, 1099
BstYI RGATCY 4 cut(s) 329, 437, 637, 1099
Bsu15I ATCGAT 1 cut(s) 183
BsuRI GGCC 3 cut(s) 217, 460, 524
BsuTUI ATCGAT 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 5 cut(s) 496, 814, 934, 1071, 1223
BtsIMutI CAGTG 3 cut(s) 200, 754, 1152
Cac8I GCNNGC 2 cut(s) 46, 1263
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 3 cut(s) 681, 962, 1233
Cfr42I CCGCGG 1 cut(s) 489
ClaI ATCGAT 1 cut(s) 183
CseI GACGC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 197, 587, 1081
CspAI ACCGGT 1 cut(s) 730
CviAII CATG 6 cut(s) 45, 49, 382, 737, 947, 1135
CviQI GTAC 3 cut(s) 197, 587, 1081
DdeI CTNAG 6 cut(s) 246, 603, 756, 855, 1116, 1174
DpnI GATC 7 cut(s) 186, 331, 439, 495, 639, 1101, 1127
DpnII GATC 7 cut(s) 184, 329, 437, 493, 637, 1099, 1125
Eam1104I CTCTTC 3 cut(s) 20, 80, 949
EarI CTCTTC 3 cut(s) 20, 80, 949
Eco147I AGGCCT 2 cut(s) 460, 524
Eco31I GGTCTC 1 cut(s) 1285
Eco47I GGWCC 3 cut(s) 681, 962, 1233
Eco57I CTGAAG 4 cut(s) 61, 282, 306, 1011
Eco88I CYCGRG 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 1233
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 372, 996
EcoT22I ATGCAT 2 cut(s) 50, 1136
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 6 cut(s) 48, 52, 385, 740, 950, 1138
FaqI GGGAC 1 cut(s) 1152
FatI CATG 6 cut(s) 44, 48, 381, 736, 946, 1134
FauI CCCGC 1 cut(s) 319
FblI GTMKAC 1 cut(s) 1179
Fnu4HI GCNGC 4 cut(s) 486, 863, 933, 1016
FokI GGATG 5 cut(s) 483, 821, 941, 1058, 1210
Fsp4HI GCNGC 4 cut(s) 486, 863, 933, 1016
FspBI CTAG 4 cut(s) 158, 315, 441, 576
GluI GCNGC 4 cut(s) 486, 863, 933, 1016
GsuI CTGGAG 2 cut(s) 224, 822
HaeIII GGCC 3 cut(s) 217, 460, 524
HapII CCGG 1 cut(s) 731
HgaI GACGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 6 cut(s) 48, 52, 385, 740, 950, 1138
HincII GTYRAC 2 cut(s) 369, 1180
HindII GTYRAC 2 cut(s) 369, 1180
HinfI GANTC 4 cut(s) 7, 479, 752, 899
HpaII CCGG 1 cut(s) 731
HphI GGTGA 6 cut(s) 28, 507, 626, 903, 1096, 1194
Hpy166II GTNNAC 3 cut(s) 197, 369, 1180
Hpy188I TCNGA 5 cut(s) 80, 100, 148, 715, 991
Hpy188III TCNNGA 5 cut(s) 500, 839, 926, 1075, 1272
Hpy8I GTNNAC 3 cut(s) 197, 369, 1180
HpyAV CCTTC 5 cut(s) 116, 306, 387, 620, 1215
HpyCH4III ACNGT 2 cut(s) 227, 847
HpyCH4IV ACGT 2 cut(s) 113, 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 419, 859
HpyF3I CTNAG 6 cut(s) 246, 603, 756, 855, 1116, 1174
HpySE526I ACGT 2 cut(s) 113, 1056
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 6 cut(s) 48, 52, 385, 740, 950, 1138
KspI CCGCGG 1 cut(s) 489
Kzo9I GATC 7 cut(s) 184, 329, 437, 493, 637, 1099, 1125
LguI GCTCTTC 1 cut(s) 80
Lsp1109I GCAGC 2 cut(s) 849, 944
LweI GCATC 2 cut(s) 919, 1232
MaeI CTAG 4 cut(s) 158, 315, 441, 576
MaeII ACGT 2 cut(s) 113, 1056
MalI GATC 7 cut(s) 186, 331, 439, 495, 639, 1101, 1127
MboI GATC 7 cut(s) 184, 329, 437, 493, 637, 1099, 1125
MboII GAAGA 9 cut(s) 37, 67, 279, 330, 488, 503, 966, 1004, 1013
MflI RGATCY 4 cut(s) 329, 437, 637, 1099
MhlI GDGCHC 2 cut(s) 283, 1062
MnlI CCTC 9 cut(s) 21, 145, 466, 514, 535, 799, 876, 1083, 1246
Mph1103I ATGCAT 2 cut(s) 50, 1136
MroXI GAANNNNTTC 2 cut(s) 105, 421
MseI TTAA 5 cut(s) 212, 261, 594, 653, 1037
MspA1I CMGCKG 1 cut(s) 488
MspCI CTTAAG 1 cut(s) 1036
MspI CCGG 1 cut(s) 731
MspR9I CCNGG 2 cut(s) 374, 998
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 2 cut(s) 374, 998
MvnI CGCG 1 cut(s) 488
MwoI GCNNNNNNNGC 3 cut(s) 126, 419, 859
NdeII GATC 7 cut(s) 184, 329, 437, 493, 637, 1099, 1125
NlaIII CATG 6 cut(s) 48, 52, 385, 740, 950, 1138
NlaIV GGNNCC 3 cut(s) 282, 1152, 1234
NmeAIII GCCGAG 1 cut(s) 595
NsiI ATGCAT 2 cut(s) 50, 1136
NspI RCATGY 2 cut(s) 48, 740
NspV TTCGAA 1 cut(s) 763
PaeI GCATGC 1 cut(s) 48
PceI AGGCCT 2 cut(s) 460, 524
PciSI GCTCTTC 1 cut(s) 80
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 2 cut(s) 105, 421
PfeI GAWTC 4 cut(s) 7, 479, 752, 899
PflFI GACNNNGTC 1 cut(s) 685
PinAI ACCGGT 1 cut(s) 730
PkrI GCNGC 4 cut(s) 487, 864, 934, 1017
PpuMI RGGWCCY 1 cut(s) 1233
Psp5II RGGWCCY 1 cut(s) 1233
Psp6I CCWGG 2 cut(s) 372, 996
PspGI CCWGG 2 cut(s) 372, 996
PspN4I GGNNCC 3 cut(s) 282, 1152, 1234
PspPI GGNCC 3 cut(s) 681, 962, 1233
PspPPI RGGWCCY 1 cut(s) 1233
PsuI RGATCY 4 cut(s) 329, 437, 637, 1099
PsyI GACNNNGTC 1 cut(s) 685
RsaI GTAC 3 cut(s) 198, 588, 1082
RsaNI GTAC 3 cut(s) 197, 587, 1081
SacII CCGCGG 1 cut(s) 489
SalI GTCGAC 1 cut(s) 1178
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 5 cut(s) 212, 261, 594, 653, 1037
SatI GCNGC 4 cut(s) 486, 863, 933, 1016
Sau3AI GATC 7 cut(s) 184, 329, 437, 493, 637, 1099, 1125
Sau96I GGNCC 3 cut(s) 681, 962, 1233
ScrFI CCNGG 2 cut(s) 374, 998
SduI GDGCHC 2 cut(s) 283, 1062
SfaNI GCATC 2 cut(s) 919, 1232
Sfr303I CCGCGG 1 cut(s) 489
SfuI TTCGAA 1 cut(s) 763
SgrBI CCGCGG 1 cut(s) 489
SinI GGWCC 3 cut(s) 681, 962, 1233
SmlI CTYRAG 1 cut(s) 1036
SmoI CTYRAG 1 cut(s) 1036
SphI GCATGC 1 cut(s) 48
SseBI AGGCCT 2 cut(s) 460, 524
SsiI CCGC 5 cut(s) 59, 312, 486, 488, 1016
SspMI CTAG 4 cut(s) 158, 315, 441, 576
StuI AGGCCT 2 cut(s) 460, 524
StyD4I CCNGG 2 cut(s) 372, 996
TaaI ACNGT 2 cut(s) 227, 847
TaiI ACGT 2 cut(s) 116, 1059
TaqI TCGA 4 cut(s) 183, 763, 1179, 1273
TauI GCSGC 2 cut(s) 488, 1018
TfiI GAWTC 4 cut(s) 7, 479, 752, 899
Tru1I TTAA 5 cut(s) 212, 261, 594, 653, 1037
Tru9I TTAA 5 cut(s) 212, 261, 594, 653, 1037
TscAI CASTG 3 cut(s) 207, 754, 1152
TseI GCWGC 2 cut(s) 862, 932
TspDTI ATGAA 6 cut(s) 98, 825, 963, 1020, 1060, 1125
TspRI CASTG 3 cut(s) 207, 754, 1152
Tth111I GACNNNGTC 1 cut(s) 685
Vha464I CTTAAG 1 cut(s) 1036
VpaK11BI GGWCC 3 cut(s) 681, 962, 1233
XapI RAATTY 3 cut(s) 161, 655, 1020
XceI RCATGY 2 cut(s) 48, 740
XmiI GTMKAC 1 cut(s) 1179
XmnI GAANNNNTTC 2 cut(s) 105, 421
XspI CTAG 4 cut(s) 158, 315, 441, 576
Zsp2I ATGCAT 2 cut(s) 50, 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.