FvH4_2g22400

E3 ubiquitin protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
18360766 .. 18367395
6630 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22400.t1

Sequence Viewer

Length: 1335 bp
ATGGCGAATCAGGGGGTGAAGGTCCAGAGGGAGAAACTTGAAGCATGCATGACCTGCCCGCTTTGCAATAAGCTGTTCAAGGATGCCACCACCATATCTGAATGTCTTCATACGAAGTGCATTGTTGAAAAGATAACCGAAGAGGACATCGAAAACTGTCCCATATGCAAAACCGATCTGGGCAGTGTGCCCTTGGAAAAGCTAAGTCGGCATTCCATGTTTAGGACATTACCATGCATAGAGCCTACTCAGATCAGTAAAGAAGCACTATTATTAGGATATGAGTTCATTGTGGTGAAGATTCAGTTCTTGCGGCCTGATCACAGTTGGCAAGATGTAAGGGCCAAGATTTTCCCTTCCAAAATAAGAAAGGTAAGTGAACCTGAAAGTACACCTTCAGCATTTCCGGCTAGAAGAAAGGAGAGATCACTCTCGTCATTGGTGGTCAGTACTCCCAGAGTATCGTCAACCCAGGCAACCATGACTGGAAAGAGAACTAAAGCTGTTGCAAGAAAGGCTTCTACTTTACAAGGATCCAAAGATCATGCAGACAGCCAAAGCTCCGCGGAGGCCTCAAATAAGTCCGGTGAAAATACCAGGCCGAGTTCGATTTCTGCTGAACCCAACGAAACTGTATCCAATAAAGAATCTGAGAATGGTGCTGAATCATGGGATGGGAAGGACCTTTGGAAACCTCTAAATTGTTTGGTGGAAGTCGCAAATCGGACCAAGTCTCTAAAACCCAATTCACAAGGGTCTGAAAGAGTAGAACCAGCTATCAGTCCCGGTGAAACTCAAGTTCGTAAATTCAAAAGTAAAGAAAACAAACAGAAGTCAAAAGTTGACGATGAAAAGAATAACACTCACCTGCCCTCTCCGGAAACAAATAAACCTAAAAAGTTGCGGAGGGCTCGCCAAAAGAGGGAAGCTTCAGGAGAACCAAGCGTTACACCCCAAGCTGTTTTGGACGCAGCCAGTGGCAAACCTGAAAGAAGAGTTGGTCCAATTTGGTTCTCCCTAGTAGCTTCTGAAGAACAGGAAGGAGAAGAATGCTTGCCACAAATTCCAACAAACTATTTAAGAATAAAAGATGGAAGTGTGCCTGTCTCATTTATCCAGAAGTACCTAATGAGGAAGCTAGACCTTACTAGTGAAACTGAGATTGAGATCAAATGCATGGGACAACCAGTGAGCCCCTCATTGGAGATGTATAATTTGGTTGACTTGTGGCTACAAACTGCATCACCTACACAAAGAATTCCAGCATCCATTGGTTCCTCTGCCAAGGATTTTGTGATGGTGCTCGGGTATTCTCGAAAGATTTCAAAATCCTAA

Protein Analysis

445

Amino Acids

49.36

Weight (kDa)

9.13

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 876
Acc36I ACCTGC 2 cut(s) 62, 876
AccII CGCG 1 cut(s) 566
AccIII TCCGGA 1 cut(s) 877
AciI CCGC 5 cut(s) 59, 313, 564, 566, 904
AclWI GGATC 2 cut(s) 528, 541
AcsI RAATTY 3 cut(s) 806, 1062, 1257
AcuI CTGAAG 3 cut(s) 381, 915, 1050
AfaI GTAC 3 cut(s) 391, 451, 1124
AfiI CCNNNNNNNGG 3 cut(s) 222, 922, 1201
AgsI TTSAA 5 cut(s) 41, 79, 128, 811, 1326
AhlI ACTAGT 1 cut(s) 1148
AjnI CCWGG 2 cut(s) 471, 596
AjuI GAANNNNNNNTTGG 2 cut(s) 981, 1013
AluBI AGCT 9 cut(s) 73, 202, 503, 561, 776, 929, 959, 1025, 1138
AluI AGCT 9 cut(s) 73, 202, 503, 561, 776, 929, 959, 1025, 1138
Alw21I GWGCWC 1 cut(s) 1305
Alw26I GTCTC 2 cut(s) 738, 1111
AlwI GGATC 2 cut(s) 528, 541
Ama87I CYCGRG 1 cut(s) 1304
Aor13HI TCCGGA 1 cut(s) 877
AoxI GGCC 4 cut(s) 314, 342, 570, 599
ApeKI GCWGC 1 cut(s) 971
ApoI RAATTY 3 cut(s) 806, 1062, 1257
Asp700I GAANNNNTTC 3 cut(s) 105, 517, 1321
AspS9I GGNCC 5 cut(s) 22, 342, 682, 726, 1001
AsuC2I CCSGG 1 cut(s) 786
AsuHPI GGTGA 6 cut(s) 28, 307, 599, 800, 857, 1236
AvaI CYCGRG 1 cut(s) 1304
AvaII GGWCC 4 cut(s) 22, 682, 726, 1001
BaeGI GKGCMC 1 cut(s) 192
BamHI GGATCC 1 cut(s) 533
BanII GRGCYC 2 cut(s) 913, 1196
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 1305
BbvI GCAGC 1 cut(s) 983
BccI CCATC 3 cut(s) 668, 1085, 1291
BciT130I CCWGG 2 cut(s) 473, 598
BciVI GTATCC 1 cut(s) 646
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 1 cut(s) 786
BcoDI GTCTC 2 cut(s) 738, 1111
BcuI ACTAGT 1 cut(s) 1148
BfaI CTAG 4 cut(s) 411, 1019, 1139, 1149
BfuAI ACCTGC 2 cut(s) 62, 876
BfuI GTATCC 1 cut(s) 646
BisI GCNGC 2 cut(s) 314, 972
BlsI GCNGC 2 cut(s) 315, 973
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 3 cut(s) 473, 598, 786
Bme18I GGWCC 4 cut(s) 22, 682, 726, 1001
BmeT110I CYCGRG 1 cut(s) 1304
BmgT120I GGNCC 5 cut(s) 22, 342, 682, 726, 1001
BmiI GGNNCC 2 cut(s) 535, 1276
BmrFI CCNGG 3 cut(s) 473, 598, 786
BmsI GCATC 3 cut(s) 73, 1250, 1274
BpiI GAAGAC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 780
BpuMI CCSGG 1 cut(s) 786
BsaBI GATNNNNATC 1 cut(s) 1166
BsaJI CCNNGG 4 cut(s) 192, 471, 564, 1284
BsaWI WCCGGW 2 cut(s) 584, 877
Bsc4I CCNNNNNNNGG 3 cut(s) 222, 922, 1201
Bse1I ACTGG 3 cut(s) 490, 975, 1187
Bse8I GATNNNNATC 1 cut(s) 1166
BseAI TCCGGA 1 cut(s) 877
BseBI CCWGG 2 cut(s) 473, 598
BseDI CCNNGG 4 cut(s) 192, 471, 564, 1284
BseGI GGATG 3 cut(s) 88, 679, 1265
BseJI GATNNNNATC 1 cut(s) 1166
BseLI CCNNNNNNNGG 3 cut(s) 222, 922, 1201
BseMII CTCAG 3 cut(s) 263, 642, 1149
BseNI ACTGG 3 cut(s) 490, 975, 1187
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 1 cut(s) 983
Bsh1236I CGCG 1 cut(s) 566
BshFI GGCC 4 cut(s) 316, 344, 572, 601
BsiHKAI GWGCWC 1 cut(s) 1305
BsiHKCI CYCGRG 1 cut(s) 1304
BsiSI CCGG 4 cut(s) 407, 585, 786, 878
BslFI GGGAC 3 cut(s) 144, 768, 1194
BslI CCNNNNNNNGG 3 cut(s) 222, 922, 1201
BsmAI GTCTC 2 cut(s) 738, 1111
BsmFI GGGAC 3 cut(s) 144, 768, 1194
BsmI GAATGC 2 cut(s) 211, 1055
BsnI GGCC 4 cut(s) 316, 344, 572, 601
BsoBI CYCGRG 1 cut(s) 1304
Bsp1286I GDGCHC 4 cut(s) 192, 913, 1196, 1305
Bsp13I TCCGGA 1 cut(s) 877
Bsp143I GATC 7 cut(s) 175, 252, 319, 425, 533, 541, 1167
BspACI CCGC 5 cut(s) 59, 313, 564, 566, 904
BspANI GGCC 4 cut(s) 316, 344, 572, 601
BspCNI CTCAG 3 cut(s) 262, 643, 1150
BspEI TCCGGA 1 cut(s) 877
BspFNI CGCG 1 cut(s) 566
BspLI GGNNCC 2 cut(s) 535, 1276
BspMI ACCTGC 2 cut(s) 62, 876
BspPI GGATC 2 cut(s) 528, 541
BsrI ACTGG 3 cut(s) 490, 975, 1187
BssECI CCNNGG 4 cut(s) 192, 471, 564, 1284
BssMI GATC 7 cut(s) 175, 252, 319, 425, 533, 541, 1167
BssT1I CCWWGG 2 cut(s) 192, 1284
Bst2UI CCWGG 2 cut(s) 473, 598
Bst4CI ACNGT 3 cut(s) 158, 326, 634
Bst6I CTCTTC 2 cut(s) 135, 988
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 4 cut(s) 46, 59, 913, 1055
BstDEI CTNAG 4 cut(s) 203, 249, 651, 1158
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 3 cut(s) 88, 679, 1265
BstFNI CGCG 1 cut(s) 566
BstKTI GATC 7 cut(s) 178, 255, 322, 428, 536, 544, 1170
BstMAI GTCTC 2 cut(s) 738, 1111
BstMBI GATC 7 cut(s) 175, 252, 319, 425, 533, 541, 1167
BstMWI GCNNNNNNNGC 5 cut(s) 54, 63, 208, 407, 515
BstNI CCWGG 2 cut(s) 473, 598
BstNSI RCATGY 1 cut(s) 48
BstSCI CCNGG 3 cut(s) 471, 596, 784
BstSLI GKGCMC 1 cut(s) 192
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 1 cut(s) 983
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 533
BstYI RGATCY 1 cut(s) 533
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 4 cut(s) 316, 344, 572, 601
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 3 cut(s) 88, 679, 1265
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 3 cut(s) 190, 982, 1194
BveI ACCTGC 2 cut(s) 62, 876
Cac8I GCNNGC 4 cut(s) 46, 59, 913, 1055
Cfr13I GGNCC 5 cut(s) 22, 342, 682, 726, 1001
Cfr42I CCGCGG 1 cut(s) 567
CseI GACGC 1 cut(s) 977
Csp6I GTAC 3 cut(s) 390, 450, 1123
CviAII CATG 8 cut(s) 45, 49, 217, 234, 481, 545, 669, 1177
CviQI GTAC 3 cut(s) 390, 450, 1123
DdeI CTNAG 4 cut(s) 203, 249, 651, 1158
DpnI GATC 7 cut(s) 177, 254, 321, 427, 535, 543, 1169
DpnII GATC 7 cut(s) 175, 252, 319, 425, 533, 541, 1167
Eam1104I CTCTTC 2 cut(s) 135, 988
EarI CTCTTC 2 cut(s) 135, 988
Eco130I CCWWGG 2 cut(s) 192, 1284
Eco147I AGGCCT 1 cut(s) 572
Eco24I GRGCYC 2 cut(s) 913, 1196
Eco47I GGWCC 4 cut(s) 22, 682, 726, 1001
Eco57I CTGAAG 3 cut(s) 381, 915, 1050
Eco88I CYCGRG 1 cut(s) 1304
EcoO109I RGGNCCY 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 1257
EcoRII CCWGG 2 cut(s) 471, 596
EcoT14I CCWWGG 2 cut(s) 192, 1284
EcoT22I ATGCAT 3 cut(s) 50, 239, 1178
EcoT38I GRGCYC 2 cut(s) 913, 1196
ErhI CCWWGG 2 cut(s) 192, 1284
FaeI CATG 8 cut(s) 48, 52, 220, 237, 484, 548, 672, 1180
FalI AAGNNNNNCTT 4 cut(s) 379, 411, 502, 534
FaqI GGGAC 3 cut(s) 144, 768, 1194
FatI CATG 8 cut(s) 44, 48, 216, 233, 480, 544, 668, 1176
FauI CCCGC 1 cut(s) 66
FauNDI CATATG 1 cut(s) 164
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 314, 972
FokI GGATG 3 cut(s) 95, 686, 1252
FriOI GRGCYC 2 cut(s) 913, 1196
Fsp4HI GCNGC 2 cut(s) 314, 972
FspBI CTAG 4 cut(s) 411, 1019, 1139, 1149
GluI GCNGC 2 cut(s) 314, 972
HaeIII GGCC 4 cut(s) 316, 344, 572, 601
HapII CCGG 4 cut(s) 407, 585, 786, 878
HgaI GACGC 1 cut(s) 977
Hin1II CATG 8 cut(s) 48, 52, 220, 237, 484, 548, 672, 1180
HincII GTYRAC 3 cut(s) 468, 844, 1222
HindII GTYRAC 3 cut(s) 468, 844, 1222
HindIII AAGCTT 1 cut(s) 927
HinfI GANTC 4 cut(s) 7, 301, 647, 665
HpaII CCGG 4 cut(s) 407, 585, 786, 878
HphI GGTGA 6 cut(s) 28, 307, 599, 800, 857, 1236
Hpy166II GTNNAC 5 cut(s) 380, 392, 468, 844, 1222
Hpy188I TCNGA 6 cut(s) 100, 252, 652, 726, 760, 1030
Hpy188III TCNNGA 5 cut(s) 25, 878, 933, 1117, 1314
Hpy8I GTNNAC 5 cut(s) 380, 392, 468, 844, 1222
HpyAV CCTTC 5 cut(s) 13, 366, 405, 673, 1034
HpyCH4III ACNGT 3 cut(s) 158, 326, 634
HpyCH4V TGCA 9 cut(s) 48, 66, 120, 168, 237, 509, 548, 1176, 1241
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 63, 208, 407, 515
HpyF3I CTNAG 4 cut(s) 203, 249, 651, 1158
Hsp92II CATG 8 cut(s) 48, 52, 220, 237, 484, 548, 672, 1180
Kpn2I TCCGGA 1 cut(s) 877
Ksp22I TGATCA 1 cut(s) 319
KspI CCGCGG 1 cut(s) 567
Kzo9I GATC 7 cut(s) 175, 252, 319, 425, 533, 541, 1167
LmnI GCTCC 1 cut(s) 566
Lsp1109I GCAGC 1 cut(s) 983
LweI GCATC 3 cut(s) 73, 1250, 1274
MaeI CTAG 4 cut(s) 411, 1019, 1139, 1149
MaeIII GTNAC 1 cut(s) 946
MalI GATC 7 cut(s) 177, 254, 321, 427, 535, 543, 1169
MboI GATC 7 cut(s) 175, 252, 319, 425, 533, 541, 1167
MboII GAAGA 7 cut(s) 98, 152, 310, 426, 1005, 1043, 1058
MflI RGATCY 1 cut(s) 533
MhlI GDGCHC 4 cut(s) 192, 913, 1196, 1305
MluCI AATT 7 cut(s) 700, 745, 806, 1005, 1062, 1213, 1257
MmeI TCCRAC 1 cut(s) 1091
Mph1103I ATGCAT 3 cut(s) 50, 239, 1178
MroI TCCGGA 1 cut(s) 877
MroXI GAANNNNTTC 3 cut(s) 105, 517, 1321
MseI TTAA 1 cut(s) 1079
MslI CAYNNNNRTG 2 cut(s) 232, 293
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 4 cut(s) 407, 585, 786, 878
MspR9I CCNGG 3 cut(s) 473, 598, 786
Mva1269I GAATGC 2 cut(s) 211, 1055
MvaI CCWGG 2 cut(s) 473, 598
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 5 cut(s) 54, 63, 208, 407, 515
NciI CCSGG 1 cut(s) 786
NdeI CATATG 1 cut(s) 164
NdeII GATC 7 cut(s) 175, 252, 319, 425, 533, 541, 1167
NlaIII CATG 8 cut(s) 48, 52, 220, 237, 484, 548, 672, 1180
NlaIV GGNNCC 2 cut(s) 535, 1276
NmeAIII GCCGAG 1 cut(s) 627
NsiI ATGCAT 3 cut(s) 50, 239, 1178
NspI RCATGY 1 cut(s) 48
PaeI GCATGC 1 cut(s) 48
PaqCI CACCTGC 1 cut(s) 876
PceI AGGCCT 1 cut(s) 572
PctI GAATGC 2 cut(s) 211, 1055
PdmI GAANNNNTTC 3 cut(s) 105, 517, 1321
PfeI GAWTC 4 cut(s) 7, 301, 647, 665
PflFI GACNNNGTC 1 cut(s) 730
PkrI GCNGC 2 cut(s) 315, 973
PpuMI RGGWCCY 1 cut(s) 682
Psp5II RGGWCCY 1 cut(s) 682
Psp6I CCWGG 2 cut(s) 471, 596
PspGI CCWGG 2 cut(s) 471, 596
PspN4I GGNNCC 2 cut(s) 535, 1276
PspPI GGNCC 5 cut(s) 22, 342, 682, 726, 1001
PspPPI RGGWCCY 1 cut(s) 682
PsuI RGATCY 1 cut(s) 533
PsyI GACNNNGTC 1 cut(s) 730
RsaI GTAC 3 cut(s) 391, 451, 1124
RsaNI GTAC 3 cut(s) 390, 450, 1123
RseI CAYNNNNRTG 2 cut(s) 232, 293
SacII CCGCGG 1 cut(s) 567
SaqAI TTAA 1 cut(s) 1079
SatI GCNGC 2 cut(s) 314, 972
Sau3AI GATC 7 cut(s) 175, 252, 319, 425, 533, 541, 1167
Sau96I GGNCC 5 cut(s) 22, 342, 682, 726, 1001
ScaI AGTACT 1 cut(s) 451
ScrFI CCNGG 3 cut(s) 473, 598, 786
SduI GDGCHC 4 cut(s) 192, 913, 1196, 1305
SfaNI GCATC 3 cut(s) 73, 1250, 1274
Sfr303I CCGCGG 1 cut(s) 567
SgrBI CCGCGG 1 cut(s) 567
SinI GGWCC 4 cut(s) 22, 682, 726, 1001
SmiMI CAYNNNNRTG 2 cut(s) 232, 293
SmlI CTYRAG 1 cut(s) 795
SmoI CTYRAG 1 cut(s) 795
SpeI ACTAGT 1 cut(s) 1148
SphI GCATGC 1 cut(s) 48
Sse9I AATT 7 cut(s) 700, 745, 806, 1005, 1062, 1213, 1257
SseBI AGGCCT 1 cut(s) 572
SsiI CCGC 5 cut(s) 59, 313, 564, 566, 904
SspMI CTAG 4 cut(s) 411, 1019, 1139, 1149
StuI AGGCCT 1 cut(s) 572
StyD4I CCNGG 3 cut(s) 471, 596, 784
StyI CCWWGG 2 cut(s) 192, 1284
TaaI ACNGT 3 cut(s) 158, 326, 634
TaqI TCGA 3 cut(s) 150, 608, 1315
TasI AATT 7 cut(s) 700, 745, 806, 1005, 1062, 1213, 1257
TatI WGTACW 2 cut(s) 389, 449
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 4 cut(s) 7, 301, 647, 665
Tru1I TTAA 1 cut(s) 1079
Tru9I TTAA 1 cut(s) 1079
TscAI CASTG 3 cut(s) 190, 982, 1194
TseI GCWGC 1 cut(s) 971
TspDTI ATGAA 3 cut(s) 98, 277, 864
TspRI CASTG 3 cut(s) 190, 982, 1194
Tth111I GACNNNGTC 1 cut(s) 730
VpaK11BI GGWCC 4 cut(s) 22, 682, 726, 1001
XapI RAATTY 3 cut(s) 806, 1062, 1257
XceI RCATGY 1 cut(s) 48
XmnI GAANNNNTTC 3 cut(s) 105, 517, 1321
XspI CTAG 4 cut(s) 411, 1019, 1139, 1149
ZrmI AGTACT 1 cut(s) 451
Zsp2I ATGCAT 3 cut(s) 50, 239, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.