Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001656

Physical Location & Seq

Genomic Coordinates Forward (+)

47806540 .. 47810427

Gene Structure 3888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025707

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCGGGTCAGGTTGTTAAGGTTAAGAGGGAGGCACTCGAGGCATGCATGACGTGTCCGCTTTGTCATAAGCTTTTGAAAGAAGCCACAACCATATCTCTCTGCCTCCACACGTTCTGCAGGAAATGTATATACGAGAAGCTGTCGGATGAGGAGGGGGATTGTTGTCCGGTTTGCGAAATTGATTTGGGCTGTCTACCGGTGGAAAAACTTAGGCCGGACCATAATCTGCAAGATATCAGGGCCAAGATATTTCCTCTTAAACGACGGAAAGTTAATGCACCCGAATCACCTTCAGTTTCATCGCCAGTGAAAAGGAAGGAGAGGTCATTATCTTCATTAGTAGTCAGCACCCCCAAAGTTTCAGTGCAGGCAGGTTTGACTGGAAAGAGATCAAGAGCTTTGACAAGAAAGGCTGCTGCTTTACGTGGATGCAGTTTTTCTGTTGAAGGAGCTTCAAAGAGAGAAGAATCTTCAGAAGATCATCCAAGGAGCTCTAGCTCACCTGATGCTCAAGATAAGATGCAGGATTCTTCCATGCCTGAGACTTCCTATGAGCAGAAGCCTAATAAAGATGATGTTGAAGTAATAGAAGGCAAAGCTGATCTGTGGACACCCTTAAACTGTCTTGTAGAGGCTGCTAACCGAACCAAGTCCTCTAAATCAAATTCACAAGGGCAGTTCCTTGCCAAATCAGAGCCACTCAATGCCCTCGATAGTATCTGTGAACTTTATATGCCTGAAAATAACACAGACGCAGAATCGCCGGATCATGTACATATGCCTAAGGCCAAAATCAAGGAGCCTGAGAACAGTACAAGAGGGAAAAAGAACAATAATGCAGCAGCGGTTACAGGAACCATGAAACGCAAGAGGTTGCATGCAGGTAATCGTAATAGGGGAGCTCCGTCTGGGGAGTTATGTGATTCAGCTCAAGCTCAAGCTGTGCTTGATGCACGTGGGGCTAAGCGTAGCAGAAGAAATAGTCCTATTTGGTTCTCCTTGGTTGCAGCTGAAAACTGGAAAGGAGAGGCCTCCTTGCCCCAGATATCATCATGTTACCTGAGAATAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

359

Amino Acids

39.36

Weight (kDa)

9.07

Isoelectric Point (pI)

66.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	19 - 59	1.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	19 - 59	2.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580
fragaria_vesca	FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710
malus_domestica	MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1
prunus_persica	Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1
pyrus_communis	pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160
rosa_chinensis	RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351
rosa_laevigata	RLG00000012310 RLG00000025707
rosa_multiflora	Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428390 Rroxscaffold_7G00179330
rosa_rugosa	Rorug02G0629900 Rorug02G0630000 Rorug06G0202900
rosa_samantha	Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200
rosa_wichuraiana	Rw3G002380 Rw6G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	365, 875
AccI	GTMKAC	1 cut(s)	196
AciI	CCGC	3 cut(s)	5, 59, 848
AclWI	GGATC	1 cut(s)	777
AcsI	RAATTY	1 cut(s)	667
AcuI	CTGAAG	2 cut(s)	279, 459
AcvI	CACGTG	1 cut(s)	959
AfaI	GTAC	2 cut(s)	777, 817
AflIII	ACRYGT	2 cut(s)	53, 111
AgeI	ACCGGT	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	79, 449, 459, 584
AjiI	CACGTC	1 cut(s)	54
Alw21I	GWGCWC	2 cut(s)	497, 907
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	777
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	4 cut(s)	215, 243, 789, 1032
ApeKI	GCWGC	6 cut(s)	416, 419, 638, 842, 845, 1010
ApoI	RAATTY	1 cut(s)	667
AsiGI	ACCGGT	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	220, 243
AsuHPI	GGTGA	2 cut(s)	282, 495
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	220
AxyI	CCTNAGG	1 cut(s)	786
BanII	GRGCYC	2 cut(s)	497, 907
BbrPI	CACGTG	1 cut(s)	959
Bbv12I	GWGCWC	2 cut(s)	497, 907
BbvI	GCAGC	6 cut(s)	403, 406, 625, 854, 857, 1022
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	118
BfuAI	ACCTGC	2 cut(s)	365, 875
BisI	GCNGC	6 cut(s)	417, 420, 639, 843, 846, 1011
BlpI	GCTNAGC	1 cut(s)	966
BlsI	GCNGC	6 cut(s)	418, 421, 640, 844, 847, 1012
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	220, 243
BmiI	GGNNCC	2 cut(s)	804, 859
BmsI	GCATC	4 cut(s)	422, 499, 513, 943
Bpu1102I	GCTNAGC	1 cut(s)	966
BpuEI	CTTGAG	3 cut(s)	498, 918, 924
BsaAI	YACGTR	2 cut(s)	428, 959
BsaJI	CCNNGG	2 cut(s)	488, 1002
BsaWI	WCCGGW	2 cut(s)	169, 199
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	3 cut(s)	308, 388, 1025
Bse21I	CCTNAGG	1 cut(s)	786
BseDI	CCNNGG	2 cut(s)	488, 1002
BseGI	GGATG	3 cut(s)	154, 437, 484
BseMII	CTCAG	3 cut(s)	534, 798, 1055
BseNI	ACTGG	3 cut(s)	308, 388, 1025
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	6 cut(s)	403, 406, 625, 854, 857, 1022
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	4 cut(s)	217, 245, 791, 1034
BshTI	ACCGGT	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	497, 907
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	4 cut(s)	170, 200, 218, 767
BsmAI	GTCTC	1 cut(s)	539
BsnI	GGCC	4 cut(s)	217, 245, 791, 1034
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	497, 907
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	4 cut(s)	392, 481, 604, 769
Bsp1720I	GCTNAGC	1 cut(s)	966
BspACI	CCGC	3 cut(s)	5, 59, 848
BspANI	GGCC	4 cut(s)	217, 245, 791, 1034
BspCNI	CTCAG	3 cut(s)	535, 799, 1056
BspLI	GGNNCC	2 cut(s)	804, 859
BspMAI	CTGCAG	1 cut(s)	122
BspMI	ACCTGC	2 cut(s)	365, 875
BspPI	GGATC	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	199
BsrGI	TGTACA	1 cut(s)	775
BsrI	ACTGG	3 cut(s)	308, 388, 1025
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	488, 1002
BssMI	GATC	4 cut(s)	392, 481, 604, 769
BssT1I	CCWWGG	2 cut(s)	488, 1002
Bst4CI	ACNGT	2 cut(s)	626, 815
BstAUI	TGTACA	1 cut(s)	775
BstBAI	YACGTR	2 cut(s)	428, 959
BstC8I	GCNNGC	3 cut(s)	46, 372, 882
BstDEI	CTNAG	6 cut(s)	212, 543, 786, 807, 966, 1064
BstF5I	GGATG	3 cut(s)	154, 437, 484
BstKTI	GATC	4 cut(s)	395, 484, 607, 772
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	4 cut(s)	392, 481, 604, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 962
BstNSI	RCATGY	2 cut(s)	48, 884
BstSFI	CTRYAG	1 cut(s)	118
BstV1I	GCAGC	6 cut(s)	403, 406, 625, 854, 857, 1022
Bsu36I	CCTNAGG	1 cut(s)	786
BsuRI	GGCC	4 cut(s)	217, 245, 791, 1034
BtgZI	GCGATG	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	54
BtsCI	GGATG	3 cut(s)	154, 437, 484
BtsIMutI	CAGTG	2 cut(s)	315, 372
BveI	ACCTGC	2 cut(s)	365, 875
Cac8I	GCNNGC	3 cut(s)	46, 372, 882
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	220, 243
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	2 cut(s)	776, 816
CspAI	ACCGGT	1 cut(s)	199
CviAII	CATG	7 cut(s)	45, 49, 538, 773, 862, 881, 1056
CviQI	GTAC	2 cut(s)	776, 816
DdeI	CTNAG	6 cut(s)	212, 543, 786, 807, 966, 1064
DpnI	GATC	4 cut(s)	394, 483, 606, 771
DpnII	GATC	4 cut(s)	392, 481, 604, 769
Ecl136II	GAGCTC	2 cut(s)	495, 905
Eco130I	CCWWGG	2 cut(s)	488, 1002
Eco147I	AGGCCT	1 cut(s)	1034
Eco24I	GRGCYC	2 cut(s)	497, 907
Eco32I	GATATC	2 cut(s)	238, 1050
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	2 cut(s)	495, 905
Eco57I	CTGAAG	2 cut(s)	279, 459
Eco72I	CACGTG	1 cut(s)	959
Eco81I	CCTNAGG	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	2 cut(s)	495, 905
EcoRV	GATATC	2 cut(s)	238, 1050
EcoT14I	CCWWGG	2 cut(s)	488, 1002
EcoT22I	ATGCAT	1 cut(s)	50
EcoT38I	GRGCYC	2 cut(s)	497, 907
ErhI	CCWWGG	2 cut(s)	488, 1002
FaeI	CATG	7 cut(s)	48, 52, 541, 776, 865, 884, 1059
FalI	AAGNNNNNCTT	2 cut(s)	933, 965
FatI	CATG	7 cut(s)	44, 48, 537, 772, 861, 880, 1055
FauNDI	CATATG	1 cut(s)	780
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	6 cut(s)	417, 420, 639, 843, 846, 1011
FokI	GGATG	3 cut(s)	161, 444, 471
FriOI	GRGCYC	2 cut(s)	497, 907
Fsp4HI	GCNGC	6 cut(s)	417, 420, 639, 843, 846, 1011
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	6 cut(s)	417, 420, 639, 843, 846, 1011
HaeIII	GGCC	4 cut(s)	217, 245, 791, 1034
HapII	CCGG	4 cut(s)	170, 200, 218, 767
HgaI	GACGC	1 cut(s)	764
Hin1II	CATG	7 cut(s)	48, 52, 541, 776, 865, 884, 1059
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	5 cut(s)	287, 470, 530, 761, 926
HpaII	CCGG	4 cut(s)	170, 200, 218, 767
HphI	GGTGA	2 cut(s)	282, 495
Hpy166II	GTNNAC	3 cut(s)	197, 612, 728
Hpy188I	TCNGA	3 cut(s)	148, 478, 697
Hpy188III	TCNNGA	2 cut(s)	396, 515
Hpy8I	GTNNAC	3 cut(s)	197, 612, 728
Hpy99I	CGWCG	1 cut(s)	270
HpyAV	CCTTC	4 cut(s)	303, 313, 443, 587
HpyCH4III	ACNGT	2 cut(s)	626, 815
HpyCH4IV	ACGT	4 cut(s)	53, 113, 427, 958
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 962
HpyF3I	CTNAG	6 cut(s)	212, 543, 786, 807, 966, 1064
HpySE526I	ACGT	4 cut(s)	53, 113, 427, 958
Hsp92II	CATG	7 cut(s)	48, 52, 541, 776, 865, 884, 1059
Kzo9I	GATC	4 cut(s)	392, 481, 604, 769
LmnI	GCTCC	5 cut(s)	452, 492, 802, 902, 910
Lsp1109I	GCAGC	6 cut(s)	403, 406, 625, 854, 857, 1022
LweI	GCATC	4 cut(s)	422, 499, 513, 943
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	4 cut(s)	53, 113, 427, 958
MaeIII	GTNAC	2 cut(s)	850, 1058
MalI	GATC	4 cut(s)	394, 483, 606, 771
MboI	GATC	4 cut(s)	392, 481, 604, 769
MboII	GAAGA	6 cut(s)	327, 465, 479, 491, 525, 990
MhlI	GDGCHC	2 cut(s)	497, 907
MluCI	AATT	2 cut(s)	180, 667
MmeI	TCCRAC	1 cut(s)	126
Mph1103I	ATGCAT	1 cut(s)	50
MseI	TTAA	5 cut(s)	18, 24, 261, 276, 620
MspA1I	CMGCKG	2 cut(s)	848, 1013
MspI	CCGG	4 cut(s)	170, 200, 218, 767
MwoI	GCNNNNNNNGC	2 cut(s)	41, 962
NdeI	CATATG	1 cut(s)	780
NdeII	GATC	4 cut(s)	392, 481, 604, 769
NlaIII	CATG	7 cut(s)	48, 52, 541, 776, 865, 884, 1059
NlaIV	GGNNCC	2 cut(s)	804, 859
NsiI	ATGCAT	1 cut(s)	50
NspI	RCATGY	2 cut(s)	48, 884
PaeI	GCATGC	2 cut(s)	48, 884
PaeR7I	CTCGAG	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	1034
PfeI	GAWTC	5 cut(s)	287, 470, 530, 761, 926
PinAI	ACCGGT	1 cut(s)	199
PkrI	GCNGC	6 cut(s)	418, 421, 640, 844, 847, 1012
PmaCI	CACGTG	1 cut(s)	959
PmlI	CACGTG	1 cut(s)	959
Ppu21I	YACGTR	2 cut(s)	428, 959
Psp124BI	GAGCTC	2 cut(s)	497, 907
PspCI	CACGTG	1 cut(s)	959
PspN4I	GGNNCC	2 cut(s)	804, 859
PspPI	GGNCC	2 cut(s)	220, 243
PspXI	VCTCGAGB	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	1013
RsaI	GTAC	2 cut(s)	777, 817
RsaNI	GTAC	2 cut(s)	776, 816
SacI	GAGCTC	2 cut(s)	497, 907
SaqAI	TTAA	5 cut(s)	18, 24, 261, 276, 620
SatI	GCNGC	6 cut(s)	417, 420, 639, 843, 846, 1011
Sau3AI	GATC	4 cut(s)	392, 481, 604, 769
Sau96I	GGNCC	2 cut(s)	220, 243
SduI	GDGCHC	2 cut(s)	497, 907
SfaNI	GCATC	4 cut(s)	422, 499, 513, 943
SfcI	CTRYAG	1 cut(s)	118
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	4 cut(s)	38, 513, 933, 939
SmoI	CTYRAG	4 cut(s)	38, 513, 933, 939
SphI	GCATGC	2 cut(s)	48, 884
Sse9I	AATT	2 cut(s)	180, 667
SseBI	AGGCCT	1 cut(s)	1034
SsiI	CCGC	3 cut(s)	5, 59, 848
SspMI	CTAG	1 cut(s)	498
SstI	GAGCTC	2 cut(s)	497, 907
StuI	AGGCCT	1 cut(s)	1034
StyI	CCWWGG	2 cut(s)	488, 1002
TaaI	ACNGT	2 cut(s)	626, 815
TaiI	ACGT	4 cut(s)	56, 116, 430, 961
TaqI	TCGA	2 cut(s)	39, 714
TasI	AATT	2 cut(s)	180, 667
TatI	WGTACW	2 cut(s)	775, 815
TfiI	GAWTC	5 cut(s)	287, 470, 530, 761, 926
Tru1I	TTAA	5 cut(s)	18, 24, 261, 276, 620
Tru9I	TTAA	5 cut(s)	18, 24, 261, 276, 620
TscAI	CASTG	2 cut(s)	315, 372
TseI	GCWGC	6 cut(s)	416, 419, 638, 842, 845, 1010
TspDTI	ATGAA	3 cut(s)	291, 327, 878
TspGWI	ACGGA	2 cut(s)	283, 897
TspRI	CASTG	2 cut(s)	315, 372
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	667
XceI	RCATGY	2 cut(s)	48, 884
XhoI	CTCGAG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	196
XspI	CTAG	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.