Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001656

Physical Location & Seq

Genomic Coordinates Reverse (-)

18337829 .. 18342243

Gene Structure 4415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22360.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGAATCAGGTGGTGAAGGTCCAGAGGGAGAAGCTTGAAGCATGCATGACCTGCCCGCTTTGCAATAAGCTGTTCAAGGATGCCACCACCATATCTGAATGTCTTCATACGTTTTGCAGGAAGTGCATTGTTGAAAAGATAACCGAAGAGGACATCGAAAACTGTCCCATATGCAAAACCGATCTGGGCAGTGTGCCCTTGGAGAAGCTAAGGCCTGATCACAGTTGGCAAGATGTAAGGGCCAAGATTTTCCCTTCCAAAAAAAGAAAGGTAAGTGAACCTGAAAGTACACCTTCAGCATTTCCGGCTAGAAGAAAGGAGAGATCACTCTCGTCATTGGTGGTCAGTACTCCCAGAGTATCGTCAACCCCGGCAACCATGACTGGAAAGAGAACTAAAGCTGTTGCAAGAAAGGCTTCTACTTTACAAGGATCCAGTTTGTTGGTTGAGAGGTCTGCTAATAATGAGGACGAGTCTGCAGAAGATCATGCAGACAGCCAAAGCTCTGCAGAGGCCTCAAAAAAGTCCGGTGAAAATACCAGGCCGAGTTCGATTTCTGCTGAACCCAACGAAACTGTATCCAATAAAGAATCTGAGAATGGTGCTGAATCATGGGATGGGAAGGACCTTTGGAAACCTCTAAATTGTTTGGTGGAAGTCGCAAATCGGACCAAGTCTCTAAAACCCAATTCACAAGGGTCTGAAAGAGTAGAACCAGCTATCAGTCCCGGTGAAACTCAAGTTCGTAAATTCAAAAGTAAAGAAAACAAACAGAAGTCAAAAGTTGACGATGAAAAGAATAACACTCACCTGCCCTCTCCGGAAACAAATAAACCTAAAAAGTTGCGGAGGGCTCGCCAAAAGAGGGAAGCTTCAGGAGAACCAAGCGTTACACCCCAAGCTGTTTTGGACGCAGCCAGTGGCAAACCTGAAAGAAGAGTTGGTCCAATTTGGTTCTCCCTAGTAGCTTCTGAAGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2

Protein Analysis

329

Amino Acids

36.25

Weight (kDa)

9.1

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580
fragaria_vesca	FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710
malus_domestica	MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1
prunus_persica	Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1
pyrus_communis	pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160
rosa_chinensis	RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351
rosa_laevigata	RLG00000012310 RLG00000025707
rosa_multiflora	Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428390 Rroxscaffold_7G00179330
rosa_rugosa	Rorug02G0629900 Rorug02G0630000 Rorug06G0202900
rosa_samantha	Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200
rosa_wichuraiana	Rw3G002380 Rw6G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	822
Acc36I	ACCTGC	2 cut(s)	62, 822
AccIII	TCCGGA	1 cut(s)	823
AciI	CCGC	2 cut(s)	59, 850
AclWI	GGATC	2 cut(s)	429, 442
AcsI	RAATTY	1 cut(s)	752
AcuI	CTGAAG	2 cut(s)	282, 861
AfaI	GTAC	2 cut(s)	292, 352
AfiI	CCNNNNNNNGG	1 cut(s)	868
AgsI	TTSAA	4 cut(s)	41, 79, 137, 757
AjnI	CCWGG	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	2 cut(s)	927, 959
AluBI	AGCT	9 cut(s)	37, 73, 211, 404, 507, 722, 875, 905, 971
AluI	AGCT	9 cut(s)	37, 73, 211, 404, 507, 722, 875, 905, 971
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	2 cut(s)	429, 442
Aor13HI	TCCGGA	1 cut(s)	823
AoxI	GGCC	4 cut(s)	215, 243, 516, 545
ApeKI	GCWGC	1 cut(s)	917
ApoI	RAATTY	1 cut(s)	752
Asp700I	GAANNNNTTC	2 cut(s)	105, 418
AspS9I	GGNCC	5 cut(s)	22, 243, 628, 672, 947
AsuC2I	CCSGG	2 cut(s)	374, 732
AsuHPI	GGTGA	4 cut(s)	28, 545, 746, 803
AvaII	GGWCC	4 cut(s)	22, 628, 672, 947
BaeGI	GKGCMC	1 cut(s)	201
BamHI	GGATCC	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	859
BbsI	GAAGAC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	929
BccI	CCATC	1 cut(s)	614
BciT130I	CCWGG	1 cut(s)	544
BciVI	GTATCC	1 cut(s)	592
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	374, 732
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	2 cut(s)	312, 965
BfmI	CTRYAG	2 cut(s)	480, 510
BfuAI	ACCTGC	2 cut(s)	62, 822
BfuI	GTATCC	1 cut(s)	592
BisI	GCNGC	1 cut(s)	918
BlsI	GCNGC	1 cut(s)	919
BmcAI	AGTACT	1 cut(s)	352
Bme1390I	CCNGG	3 cut(s)	374, 544, 732
Bme18I	GGWCC	4 cut(s)	22, 628, 672, 947
BmgT120I	GGNCC	5 cut(s)	22, 243, 628, 672, 947
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	3 cut(s)	374, 544, 732
BmsI	GCATC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	98
Bpu10I	CCTNAGC	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	726
BpuMI	CCSGG	2 cut(s)	374, 732
BsaJI	CCNNGG	2 cut(s)	201, 372
BsaWI	WCCGGW	2 cut(s)	530, 823
Bsc4I	CCNNNNNNNGG	1 cut(s)	868
Bse1I	ACTGG	3 cut(s)	391, 438, 921
BseAI	TCCGGA	1 cut(s)	823
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	2 cut(s)	201, 372
BseGI	GGATG	2 cut(s)	88, 625
BseLI	CCNNNNNNNGG	1 cut(s)	868
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	3 cut(s)	391, 438, 921
BseSI	GKGCMC	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	929
BshFI	GGCC	4 cut(s)	217, 245, 518, 547
BsiSI	CCGG	5 cut(s)	308, 374, 531, 732, 824
BslFI	GGGAC	2 cut(s)	153, 714
BslI	CCNNNNNNNGG	1 cut(s)	868
BsmAI	GTCTC	1 cut(s)	684
BsmFI	GGGAC	2 cut(s)	153, 714
BsnI	GGCC	4 cut(s)	217, 245, 518, 547
Bsp1286I	GDGCHC	2 cut(s)	201, 859
Bsp13I	TCCGGA	1 cut(s)	823
Bsp143I	GATC	5 cut(s)	184, 220, 326, 434, 487
BspACI	CCGC	2 cut(s)	59, 850
BspANI	GGCC	4 cut(s)	217, 245, 518, 547
BspCNI	CTCAG	1 cut(s)	589
BspEI	TCCGGA	1 cut(s)	823
BspLI	GGNNCC	1 cut(s)	436
BspMAI	CTGCAG	2 cut(s)	484, 514
BspMI	ACCTGC	2 cut(s)	62, 822
BspPI	GGATC	2 cut(s)	429, 442
BsrI	ACTGG	3 cut(s)	391, 438, 921
BssECI	CCNNGG	2 cut(s)	201, 372
BssMI	GATC	5 cut(s)	184, 220, 326, 434, 487
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	4 cut(s)	167, 227, 580, 984
Bst6I	CTCTTC	2 cut(s)	144, 934
BstAPI	GCANNNNNTGC	2 cut(s)	54, 126
BstC8I	GCNNGC	3 cut(s)	46, 59, 859
BstDEI	CTNAG	2 cut(s)	212, 597
BstF5I	GGATG	2 cut(s)	88, 625
BstKTI	GATC	5 cut(s)	187, 223, 329, 437, 490
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	5 cut(s)	184, 220, 326, 434, 487
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 63, 126, 308, 416
BstNI	CCWGG	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	48
BstSCI	CCNGG	3 cut(s)	372, 542, 730
BstSFI	CTRYAG	2 cut(s)	480, 510
BstSLI	GKGCMC	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	929
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	434
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	434
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	4 cut(s)	217, 245, 518, 547
BtsCI	GGATG	2 cut(s)	88, 625
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	199, 928
BveI	ACCTGC	2 cut(s)	62, 822
Cac8I	GCNNGC	3 cut(s)	46, 59, 859
Cfr13I	GGNCC	5 cut(s)	22, 243, 628, 672, 947
CseI	GACGC	1 cut(s)	923
Csp6I	GTAC	2 cut(s)	291, 351
CviAII	CATG	5 cut(s)	45, 49, 382, 491, 615
CviQI	GTAC	2 cut(s)	291, 351
DdeI	CTNAG	2 cut(s)	212, 597
DpnI	GATC	5 cut(s)	186, 222, 328, 436, 489
DpnII	GATC	5 cut(s)	184, 220, 326, 434, 487
Eam1104I	CTCTTC	2 cut(s)	144, 934
EarI	CTCTTC	2 cut(s)	144, 934
Eco130I	CCWWGG	1 cut(s)	201
Eco147I	AGGCCT	2 cut(s)	217, 518
Eco24I	GRGCYC	1 cut(s)	859
Eco47I	GGWCC	4 cut(s)	22, 628, 672, 947
Eco57I	CTGAAG	2 cut(s)	282, 861
EcoO109I	RGGNCCY	1 cut(s)	628
EcoRII	CCWGG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	5 cut(s)	48, 52, 385, 494, 618
FaiI	YATR	9 cut(s)	46, 50, 95, 111, 173, 175, 383, 492, 616
FalI	AAGNNNNNCTT	4 cut(s)	280, 312, 403, 435
FaqI	GGGAC	2 cut(s)	153, 714
FatI	CATG	5 cut(s)	44, 48, 381, 490, 614
FauI	CCCGC	1 cut(s)	66
FauNDI	CATATG	1 cut(s)	173
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	918
FokI	GGATG	2 cut(s)	95, 632
FriOI	GRGCYC	1 cut(s)	859
Fsp4HI	GCNGC	1 cut(s)	918
FspBI	CTAG	2 cut(s)	312, 965
GluI	GCNGC	1 cut(s)	918
HaeIII	GGCC	4 cut(s)	217, 245, 518, 547
HapII	CCGG	5 cut(s)	308, 374, 531, 732, 824
HgaI	GACGC	1 cut(s)	923
Hin1II	CATG	5 cut(s)	48, 52, 385, 494, 618
HincII	GTYRAC	2 cut(s)	369, 790
HindII	GTYRAC	2 cut(s)	369, 790
HindIII	AAGCTT	2 cut(s)	35, 873
HinfI	GANTC	4 cut(s)	7, 476, 593, 611
HpaII	CCGG	5 cut(s)	308, 374, 531, 732, 824
HphI	GGTGA	4 cut(s)	28, 545, 746, 803
Hpy166II	GTNNAC	4 cut(s)	281, 293, 369, 790
Hpy188I	TCNGA	5 cut(s)	100, 598, 672, 706, 976
Hpy188III	TCNNGA	3 cut(s)	25, 824, 879
Hpy8I	GTNNAC	4 cut(s)	281, 293, 369, 790
HpyAV	CCTTC	4 cut(s)	13, 267, 306, 619
HpyCH4III	ACNGT	4 cut(s)	167, 227, 580, 984
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	9 cut(s)	48, 66, 120, 129, 177, 410, 482, 494, 512
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 63, 126, 308, 416
HpyF3I	CTNAG	2 cut(s)	212, 597
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	5 cut(s)	48, 52, 385, 494, 618
Kpn2I	TCCGGA	1 cut(s)	823
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	5 cut(s)	184, 220, 326, 434, 487
Lsp1109I	GCAGC	1 cut(s)	929
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	312, 965
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	892
MalI	GATC	5 cut(s)	186, 222, 328, 436, 489
MboI	GATC	5 cut(s)	184, 220, 326, 434, 487
MboII	GAAGA	5 cut(s)	98, 161, 327, 497, 951
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	2 cut(s)	201, 859
MluCI	AATT	4 cut(s)	646, 691, 752, 951
MlyI	GAGTC	1 cut(s)	485
Mph1103I	ATGCAT	1 cut(s)	50
MroI	TCCGGA	1 cut(s)	823
MroXI	GAANNNNTTC	2 cut(s)	105, 418
MspI	CCGG	5 cut(s)	308, 374, 531, 732, 824
MspR9I	CCNGG	3 cut(s)	374, 544, 732
MvaI	CCWGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	5 cut(s)	54, 63, 126, 308, 416
NciI	CCSGG	2 cut(s)	374, 732
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	5 cut(s)	184, 220, 326, 434, 487
NlaIII	CATG	5 cut(s)	48, 52, 385, 494, 618
NlaIV	GGNNCC	1 cut(s)	436
NmeAIII	GCCGAG	1 cut(s)	573
NsiI	ATGCAT	1 cut(s)	50
NspI	RCATGY	1 cut(s)	48
PaeI	GCATGC	1 cut(s)	48
PaqCI	CACCTGC	1 cut(s)	822
PceI	AGGCCT	2 cut(s)	217, 518
PdmI	GAANNNNTTC	2 cut(s)	105, 418
PfeI	GAWTC	3 cut(s)	7, 593, 611
PflFI	GACNNNGTC	1 cut(s)	676
PkrI	GCNGC	1 cut(s)	919
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PpuMI	RGGWCCY	1 cut(s)	628
Psp5II	RGGWCCY	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	5 cut(s)	22, 243, 628, 672, 947
PspPPI	RGGWCCY	1 cut(s)	628
PstI	CTGCAG	2 cut(s)	484, 514
PsuI	RGATCY	1 cut(s)	434
PsyI	GACNNNGTC	1 cut(s)	676
RsaI	GTAC	2 cut(s)	292, 352
RsaNI	GTAC	2 cut(s)	291, 351
SatI	GCNGC	1 cut(s)	918
Sau3AI	GATC	5 cut(s)	184, 220, 326, 434, 487
Sau96I	GGNCC	5 cut(s)	22, 243, 628, 672, 947
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	3 cut(s)	374, 544, 732
SduI	GDGCHC	2 cut(s)	201, 859
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	2 cut(s)	480, 510
SinI	GGWCC	4 cut(s)	22, 628, 672, 947
SmlI	CTYRAG	1 cut(s)	741
SmoI	CTYRAG	1 cut(s)	741
SphI	GCATGC	1 cut(s)	48
Sse9I	AATT	4 cut(s)	646, 691, 752, 951
SseBI	AGGCCT	2 cut(s)	217, 518
SsiI	CCGC	2 cut(s)	59, 850
SspMI	CTAG	2 cut(s)	312, 965
StuI	AGGCCT	2 cut(s)	217, 518
StyD4I	CCNGG	3 cut(s)	372, 542, 730
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	167, 227, 580, 984
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	2 cut(s)	159, 554
TasI	AATT	4 cut(s)	646, 691, 752, 951
TatI	WGTACW	2 cut(s)	290, 350
TfiI	GAWTC	3 cut(s)	7, 593, 611
TscAI	CASTG	2 cut(s)	199, 928
TseI	GCWGC	1 cut(s)	917
TspDTI	ATGAA	2 cut(s)	98, 810
TspRI	CASTG	2 cut(s)	199, 928
Tth111I	GACNNNGTC	1 cut(s)	676
VpaK11BI	GGWCC	4 cut(s)	22, 628, 672, 947
XapI	RAATTY	1 cut(s)	752
XceI	RCATGY	1 cut(s)	48
XmnI	GAANNNNTTC	2 cut(s)	105, 418
XspI	CTAG	2 cut(s)	312, 965
ZrmI	AGTACT	1 cut(s)	352
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.