Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001656

Physical Location & Seq

Genomic Coordinates Reverse (-)

2036514 .. 2041054

Gene Structure 4541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG030100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGATCTGCAGGCCGGACCATAATCTGCAAGATATCAGGGCCAAGATATTTCCTCTTAAACGACGGAAAGTTAATGCACCCGAATCACCTTCAGTTTCATCGCCAGTGAAAAGGAAGGAGAGGTCGTTATCTTCATTAGTAGTCAGCACCCCCAAAGTTTCAGTGCAGGCAGGTTTGACTGGAAAGAGATCAAGAGCTTTGACAAGAAAGGCTGCTGCTTTACGTGGATGCAGTTTTTCTGTTGAAGGAGCTTCAAAGAGAGAAGAATCTTCAGAAGATCATCCAAGGAGCTCTAGCTCACCTGATGCTCAAGATAAGATGCAGGATTCTTCCATACCTGAGACTTCCTATGAGCAGAAGCCTAATAAAGATGATGTTGAAGTAATAGAAGGCAAAGCTGATCTGTGGACACCCTTAAACTGTCTTGTAGAGGCTGCTAACCGAACCAAGTCCTCTAAGTCAAATTCACAAGGCCAGTTCCTTGCCAAATCAGAGCCACTCAATGCCCTTGATAGTATCTGTGAACTTTATATGCCTGAAAATAACACAGACGCAGAATCGCCGGATCATGTACATATGCCTAAGGCCAAAATCAAGGAACCCGAGAACAGTACAAGAGGAAAAAAGAACAATAATGCAGCGGCAGTTACAGGAACCATGAAACGCAAGAGGTTGCATGCGGGTAATCGTAATAGGGGAGCTCCGTCTGGGGAGTCATGTGATTCAGCTCAAGCTCAAGCTGTGCTTGATGCACGTGGGGCTAAGCGTGGCAGAAGAAATAGTCCTATTTGGTTCTCCTTGGTTGCAGCTGAAAACTGGAAAGGAGAGGCCTCCTTGCCCCAGATATCATCATGTTACCTGAGAATAAAGGATGGTAAAATGCCTGTTACATTTATTCAGAAGTACCTTGTGAAGAAACTTGAACTTACCAGTGAAGCTGAGGTGGAGATAATGTGCCGGGGTCAGCCTGTGCATCCAACATTGCAACTACATAACCTAGTAGATATGTGGTTCCGAAATGGATCTACAACAAAAAAGTTACCAGCAACAGTCGGCTCCTCTGCTAAAGATTTTGTGATGGTCCTCTCATACTGTCGACGTGTGCAAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

371

Amino Acids

40.94

Weight (kDa)

9.63

Isoelectric Point (pI)

61.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580
fragaria_vesca	FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710
malus_domestica	MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1
prunus_persica	Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1
pyrus_communis	pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160
rosa_chinensis	RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351
rosa_laevigata	RLG00000012310 RLG00000025707
rosa_multiflora	Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428390 Rroxscaffold_7G00179330
rosa_rugosa	Rorug02G0629900 Rorug02G0630000 Rorug06G0202900
rosa_samantha	Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200
rosa_wichuraiana	Rw3G002380 Rw6G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	1096
AciI	CCGC	2 cut(s)	641, 680
AclWI	GGATC	2 cut(s)	573, 1030
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	2 cut(s)	75, 255
AcvI	CACGTG	1 cut(s)	755
AfaI	GTAC	3 cut(s)	573, 613, 905
AflIII	ACRYGT	1 cut(s)	1099
AgsI	TTSAA	4 cut(s)	245, 255, 380, 923
AjiI	CACGTC	1 cut(s)	1100
Alw21I	GWGCWC	2 cut(s)	293, 703
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	573, 1030
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	5 cut(s)	11, 39, 472, 585, 828
ApeKI	GCWGC	5 cut(s)	212, 215, 434, 638, 806
ApoI	RAATTY	1 cut(s)	463
AspS9I	GGNCC	3 cut(s)	16, 39, 1081
AsuC2I	CCSGG	1 cut(s)	959
AsuHPI	GGTGA	2 cut(s)	78, 291
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	2 cut(s)	16, 1081
AxyI	CCTNAGG	1 cut(s)	582
BanII	GRGCYC	2 cut(s)	293, 703
BbrPI	CACGTG	1 cut(s)	755
Bbv12I	GWGCWC	2 cut(s)	293, 703
BbvCI	CCTCAGC	1 cut(s)	939
BbvI	GCAGC	5 cut(s)	199, 202, 421, 650, 818
BccI	CCATC	2 cut(s)	866, 1072
BcnI	CCSGG	1 cut(s)	959
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	2 cut(s)	294, 998
BfmI	CTRYAG	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	161
BisI	GCNGC	6 cut(s)	213, 216, 435, 639, 642, 807
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	6 cut(s)	214, 217, 436, 640, 643, 808
Bme1390I	CCNGG	1 cut(s)	959
Bme18I	GGWCC	2 cut(s)	16, 1081
BmeT110I	CYCGRG	1 cut(s)	602
BmgBI	CACGTC	1 cut(s)	1100
BmgT120I	GGNCC	3 cut(s)	16, 39, 1081
BmiI	GGNNCC	4 cut(s)	600, 655, 1013, 1057
BmrFI	CCNGG	1 cut(s)	959
BmsI	GCATC	5 cut(s)	218, 295, 309, 739, 982
Bpu10I	CCTNAGC	1 cut(s)	939
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	3 cut(s)	294, 714, 720
BpuMI	CCSGG	1 cut(s)	959
BsaAI	YACGTR	2 cut(s)	224, 755
BsaJI	CCNNGG	3 cut(s)	284, 798, 958
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 938, 968
Bse1I	ACTGG	5 cut(s)	104, 184, 475, 821, 930
Bse21I	CCTNAGG	1 cut(s)	582
Bse3DI	GCAATG	1 cut(s)	980
BseDI	CCNNGG	3 cut(s)	284, 798, 958
BseGI	GGATG	4 cut(s)	233, 280, 877, 973
BseMI	GCAATG	1 cut(s)	980
BseMII	CTCAG	3 cut(s)	330, 851, 930
BseNI	ACTGG	5 cut(s)	104, 184, 475, 821, 930
BseRI	GAGGAG	1 cut(s)	1048
BseXI	GCAGC	5 cut(s)	199, 202, 421, 650, 818
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	5 cut(s)	13, 41, 474, 587, 830
BsiHKAI	GWGCWC	2 cut(s)	293, 703
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	3 cut(s)	14, 563, 958
BsmAI	GTCTC	1 cut(s)	335
BsnI	GGCC	5 cut(s)	13, 41, 474, 587, 830
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	293, 703
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	6 cut(s)	3, 188, 277, 400, 565, 1022
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	2 cut(s)	641, 680
BspANI	GGCC	5 cut(s)	13, 41, 474, 587, 830
BspCNI	CTCAG	3 cut(s)	331, 852, 931
BspLI	GGNNCC	4 cut(s)	600, 655, 1013, 1057
BspMAI	CTGCAG	1 cut(s)	11
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	2 cut(s)	573, 1030
BsrDI	GCAATG	1 cut(s)	980
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	5 cut(s)	104, 184, 475, 821, 930
BssECI	CCNNGG	3 cut(s)	284, 798, 958
BssMI	GATC	6 cut(s)	3, 188, 277, 400, 565, 1022
BssT1I	CCWWGG	2 cut(s)	284, 798
Bst4CI	ACNGT	4 cut(s)	422, 611, 1051, 1094
BstAUI	TGTACA	1 cut(s)	571
BstBAI	YACGTR	2 cut(s)	224, 755
BstC8I	GCNNGC	3 cut(s)	11, 168, 678
BstDEI	CTNAG	6 cut(s)	339, 456, 582, 762, 860, 939
BstF5I	GGATG	4 cut(s)	233, 280, 877, 973
BstKTI	GATC	6 cut(s)	6, 191, 280, 403, 568, 1025
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	6 cut(s)	3, 188, 277, 400, 565, 1022
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	957
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	5 cut(s)	199, 202, 421, 650, 818
BstX2I	RGATCY	1 cut(s)	1022
BstYI	RGATCY	1 cut(s)	1022
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	5 cut(s)	13, 41, 474, 587, 830
BtgZI	GCGATG	1 cut(s)	84
BtrI	CACGTC	1 cut(s)	1100
BtsCI	GGATG	4 cut(s)	233, 280, 877, 973
BtsIMutI	CAGTG	3 cut(s)	111, 168, 937
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	3 cut(s)	11, 168, 678
Cfr13I	GGNCC	3 cut(s)	16, 39, 1081
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	3 cut(s)	572, 612, 904
CviAII	CATG	6 cut(s)	569, 658, 677, 717, 852, 1113
CviQI	GTAC	3 cut(s)	572, 612, 904
DdeI	CTNAG	6 cut(s)	339, 456, 582, 762, 860, 939
DpnI	GATC	6 cut(s)	5, 190, 279, 402, 567, 1024
DpnII	GATC	6 cut(s)	3, 188, 277, 400, 565, 1022
Ecl136II	GAGCTC	2 cut(s)	291, 701
Eco130I	CCWWGG	2 cut(s)	284, 798
Eco147I	AGGCCT	1 cut(s)	830
Eco24I	GRGCYC	2 cut(s)	293, 703
Eco32I	GATATC	2 cut(s)	34, 846
Eco47I	GGWCC	2 cut(s)	16, 1081
Eco53kI	GAGCTC	2 cut(s)	291, 701
Eco57I	CTGAAG	2 cut(s)	75, 255
Eco72I	CACGTG	1 cut(s)	755
Eco81I	CCTNAGG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	602
EcoICRI	GAGCTC	2 cut(s)	291, 701
EcoRV	GATATC	2 cut(s)	34, 846
EcoT14I	CCWWGG	2 cut(s)	284, 798
EcoT38I	GRGCYC	2 cut(s)	293, 703
ErhI	CCWWGG	2 cut(s)	284, 798
FaeI	CATG	6 cut(s)	572, 661, 680, 720, 855, 1116
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FatI	CATG	6 cut(s)	568, 657, 676, 716, 851, 1112
FauI	CCCGC	1 cut(s)	673
FauNDI	CATATG	1 cut(s)	576
FblI	GTMKAC	1 cut(s)	1096
Fnu4HI	GCNGC	6 cut(s)	213, 216, 435, 639, 642, 807
FokI	GGATG	4 cut(s)	240, 267, 884, 960
FriOI	GRGCYC	2 cut(s)	293, 703
Fsp4HI	GCNGC	6 cut(s)	213, 216, 435, 639, 642, 807
FspBI	CTAG	2 cut(s)	294, 998
GluI	GCNGC	6 cut(s)	213, 216, 435, 639, 642, 807
HaeIII	GGCC	5 cut(s)	13, 41, 474, 587, 830
HapII	CCGG	3 cut(s)	14, 563, 958
HgaI	GACGC	1 cut(s)	560
Hin1II	CATG	6 cut(s)	572, 661, 680, 720, 855, 1116
HincII	GTYRAC	1 cut(s)	1097
HindII	GTYRAC	1 cut(s)	1097
HinfI	GANTC	6 cut(s)	83, 266, 326, 557, 713, 722
HpaII	CCGG	3 cut(s)	14, 563, 958
HphI	GGTGA	2 cut(s)	78, 291
Hpy166II	GTNNAC	3 cut(s)	408, 524, 1097
Hpy188I	TCNGA	4 cut(s)	274, 493, 900, 1016
Hpy188III	TCNNGA	2 cut(s)	192, 311
Hpy8I	GTNNAC	3 cut(s)	408, 524, 1097
Hpy99I	CGWCG	2 cut(s)	66, 1101
HpyAV	CCTTC	4 cut(s)	99, 109, 239, 383
HpyCH4III	ACNGT	4 cut(s)	422, 611, 1051, 1094
HpyCH4IV	ACGT	3 cut(s)	223, 754, 1099
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	6 cut(s)	339, 456, 582, 762, 860, 939
HpySE526I	ACGT	3 cut(s)	223, 754, 1099
Hsp92II	CATG	6 cut(s)	572, 661, 680, 720, 855, 1116
Kzo9I	GATC	6 cut(s)	3, 188, 277, 400, 565, 1022
LmnI	GCTCC	5 cut(s)	248, 288, 698, 706, 1061
Lsp1109I	GCAGC	5 cut(s)	199, 202, 421, 650, 818
LweI	GCATC	5 cut(s)	218, 295, 309, 739, 982
MaeI	CTAG	2 cut(s)	294, 998
MaeII	ACGT	3 cut(s)	223, 754, 1099
MaeIII	GTNAC	4 cut(s)	646, 854, 886, 1038
MalI	GATC	6 cut(s)	5, 190, 279, 402, 567, 1024
MboI	GATC	6 cut(s)	3, 188, 277, 400, 565, 1022
MboII	GAAGA	7 cut(s)	123, 261, 275, 287, 321, 786, 925
MflI	RGATCY	1 cut(s)	1022
MhlI	GDGCHC	2 cut(s)	293, 703
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	1 cut(s)	1001
MseI	TTAA	3 cut(s)	57, 72, 416
MspA1I	CMGCKG	2 cut(s)	641, 809
MspI	CCGG	3 cut(s)	14, 563, 958
MspR9I	CCNGG	1 cut(s)	959
MwoI	GCNNNNNNNGC	1 cut(s)	758
NciI	CCSGG	1 cut(s)	959
NdeI	CATATG	1 cut(s)	576
NdeII	GATC	6 cut(s)	3, 188, 277, 400, 565, 1022
NlaIII	CATG	6 cut(s)	572, 661, 680, 720, 855, 1116
NlaIV	GGNNCC	4 cut(s)	600, 655, 1013, 1057
NspI	RCATGY	1 cut(s)	680
PaeI	GCATGC	1 cut(s)	680
PceI	AGGCCT	1 cut(s)	830
PfeI	GAWTC	5 cut(s)	83, 266, 326, 557, 722
PkrI	GCNGC	6 cut(s)	214, 217, 436, 640, 643, 808
PleI	GAGTC	1 cut(s)	721
PmaCI	CACGTG	1 cut(s)	755
PmlI	CACGTG	1 cut(s)	755
PpsI	GAGTC	1 cut(s)	721
Ppu21I	YACGTR	2 cut(s)	224, 755
Psp124BI	GAGCTC	2 cut(s)	293, 703
PspCI	CACGTG	1 cut(s)	755
PspN4I	GGNNCC	4 cut(s)	600, 655, 1013, 1057
PspPI	GGNCC	3 cut(s)	16, 39, 1081
PstI	CTGCAG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	1022
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	3 cut(s)	573, 613, 905
RsaNI	GTAC	3 cut(s)	572, 612, 904
SacI	GAGCTC	2 cut(s)	293, 703
SalI	GTCGAC	1 cut(s)	1095
SaqAI	TTAA	3 cut(s)	57, 72, 416
SatI	GCNGC	6 cut(s)	213, 216, 435, 639, 642, 807
Sau3AI	GATC	6 cut(s)	3, 188, 277, 400, 565, 1022
Sau96I	GGNCC	3 cut(s)	16, 39, 1081
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	1 cut(s)	959
SduI	GDGCHC	2 cut(s)	293, 703
SfaNI	GCATC	5 cut(s)	218, 295, 309, 739, 982
SfcI	CTRYAG	1 cut(s)	7
SinI	GGWCC	2 cut(s)	16, 1081
SmlI	CTYRAG	3 cut(s)	309, 729, 735
SmoI	CTYRAG	3 cut(s)	309, 729, 735
SphI	GCATGC	1 cut(s)	680
Sse9I	AATT	1 cut(s)	463
SseBI	AGGCCT	1 cut(s)	830
SsiI	CCGC	2 cut(s)	641, 680
SspMI	CTAG	2 cut(s)	294, 998
SstI	GAGCTC	2 cut(s)	293, 703
StuI	AGGCCT	1 cut(s)	830
StyD4I	CCNGG	1 cut(s)	957
StyI	CCWWGG	2 cut(s)	284, 798
TaaI	ACNGT	4 cut(s)	422, 611, 1051, 1094
TaiI	ACGT	3 cut(s)	226, 757, 1102
TaqI	TCGA	1 cut(s)	1096
TasI	AATT	1 cut(s)	463
TatI	WGTACW	2 cut(s)	571, 611
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	5 cut(s)	83, 266, 326, 557, 722
Tru1I	TTAA	3 cut(s)	57, 72, 416
Tru9I	TTAA	3 cut(s)	57, 72, 416
TscAI	CASTG	3 cut(s)	111, 168, 937
TseI	GCWGC	5 cut(s)	212, 215, 434, 638, 806
TspDTI	ATGAA	3 cut(s)	87, 123, 674
TspGWI	ACGGA	2 cut(s)	79, 693
TspRI	CASTG	3 cut(s)	111, 168, 937
VpaK11BI	GGWCC	2 cut(s)	16, 1081
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	1096
XspI	CTAG	2 cut(s)	294, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.