Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001656

Physical Location & Seq

Genomic Coordinates Reverse (-)

2132019 .. 2136395

Gene Structure 4377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCGGGTCAGGTTGTTAAGGTTAAGAGGGAGGCACTCGAGGCATGCATGACGTGTCCGCTTTGTCATAAGCTTTTGAAAGAAGCCACAACCATATCTCTCTGCCTCCACACGTTCTGCAGGAAATGTATATACGAGAAGCTGTCGGATGAGGAGGGGGATTGTTGTCCGGTTTGCGAAATTGATTTGGGCTGTCTACCCGTGGAAAAACTTAGGCCGGACCATAATCTGCAAGATATCAGGGCCAAGATATTTCCTCTTAAACGACGGAAAGTTAATGCACCCGAATCACCTTCAGTTTCATCGCCGGTTAAAAGGAAGGAGAGGTCATTATCTTCATTAGTAGTCAGCACCCCCAAAGTTTCAGTGCAGGCAGGTTTGACTGGAAAGAGATCAAGAGCTTTGACAAGAAAGGCTGCTGCTTTACGTGGATGCAGTTTTTCTGTTGAAGGAGCTTCAAAGAGAGAAGAATCTTCAGAAGATCATCCAAGGAGCTCTAGCTCACCTGATGCTCAAGATAAGATGCAGGATTCTTCCATACCTGAGACTTCCTATGAGCAGAAGCCTAATAAAGATGATGTTGAAGTAATAGAAGGCAAAGCTGATCTGTGGACACCCTTAAACTGTCTTGTAGAGGCTGCTAACCGAACCAAGTCCTCTAAGTCAAATTCACAAGGCCAGTTCCTTACCAAATCAGAGCCACTCAATGCCCTTGATAGTATCTGTGAACTTTATATGCCTGAAAATAACACAGACGCAGAATCGCCGGATCATGTACATATGCCTAAGGCCAAAATCAAGGAACCCGAGAACAGTACAAGAGGAAAAAAGAACAATAATGCAGCGGCAGTTACAGGAACCATGAAACGCAAGAGGTTGCATGCGGGTAATCGTAATAGGGGAGCTCCGTCTGGGGAGTCATGTGATTCAGCTCAAGCTCAAGCTGTGCTTGATGCACGTGGGGCTAAGCGTGGCAGAAGAAATAGTCCTATTTGGTTCTCCTTGGTTGCAGCTGAAAACTGGAAAGGAGAGGCCTCCTTGCCCCAGATATCATCATGTTACCTGAGAATAAAGGATGGTAAAATGCCTGTTACATTTATTCAGAAGTACCTTGTGAAGAAACTTGAACTTACCAGTGAAGCTGAGGTGGAGATAATGTGCCGGGGTCAGCCTGTGCATCCAACATTGCAACTACATAACCTAGTAGATATGTGGTTCCGAAATGGATCTACAACAAAAAAGTTACCAGCAACAGTCGGCTCCTCTGCTAAAGATTTTGTGATGGTCCTCTCATACTGTCGACGTGTGCAAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

439

Amino Acids

48.51

Weight (kDa)

9.17

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	19 - 59	2.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	19 - 59	3.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580
fragaria_vesca	FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710
malus_domestica	MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1
prunus_persica	Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1
pyrus_communis	pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160
rosa_chinensis	RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351
rosa_laevigata	RLG00000012310 RLG00000025707
rosa_multiflora	Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428390 Rroxscaffold_7G00179330
rosa_rugosa	Rorug02G0629900 Rorug02G0630000 Rorug06G0202900
rosa_samantha	Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200
rosa_wichuraiana	Rw3G002380 Rw6G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	365
AccI	GTMKAC	2 cut(s)	196, 1300
AciI	CCGC	4 cut(s)	5, 59, 845, 884
AclWI	GGATC	2 cut(s)	777, 1234
AcsI	RAATTY	1 cut(s)	667
AcuI	CTGAAG	2 cut(s)	279, 459
AcvI	CACGTG	1 cut(s)	959
AfaI	GTAC	3 cut(s)	777, 817, 1109
AflIII	ACRYGT	3 cut(s)	53, 111, 1303
AgsI	TTSAA	5 cut(s)	79, 449, 459, 584, 1127
AjiI	CACGTC	2 cut(s)	54, 1304
Alw21I	GWGCWC	2 cut(s)	497, 907
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	2 cut(s)	777, 1234
Ama87I	CYCGRG	2 cut(s)	38, 806
AoxI	GGCC	5 cut(s)	215, 243, 676, 789, 1032
ApeKI	GCWGC	5 cut(s)	416, 419, 638, 842, 1010
ApoI	RAATTY	1 cut(s)	667
AspS9I	GGNCC	3 cut(s)	220, 243, 1285
AsuC2I	CCSGG	1 cut(s)	1163
AsuHPI	GGTGA	2 cut(s)	282, 495
AvaI	CYCGRG	2 cut(s)	38, 806
AvaII	GGWCC	2 cut(s)	220, 1285
AxyI	CCTNAGG	1 cut(s)	786
BanII	GRGCYC	2 cut(s)	497, 907
BbrPI	CACGTG	1 cut(s)	959
Bbv12I	GWGCWC	2 cut(s)	497, 907
BbvCI	CCTCAGC	1 cut(s)	1143
BbvI	GCAGC	5 cut(s)	403, 406, 625, 854, 1022
BccI	CCATC	2 cut(s)	1070, 1276
BcnI	CCSGG	1 cut(s)	1163
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	2 cut(s)	498, 1202
BfmI	CTRYAG	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	365
BisI	GCNGC	6 cut(s)	417, 420, 639, 843, 846, 1011
BlpI	GCTNAGC	1 cut(s)	966
BlsI	GCNGC	6 cut(s)	418, 421, 640, 844, 847, 1012
Bme1390I	CCNGG	1 cut(s)	1163
Bme18I	GGWCC	2 cut(s)	220, 1285
BmeT110I	CYCGRG	2 cut(s)	38, 806
BmgBI	CACGTC	2 cut(s)	54, 1304
BmgT120I	GGNCC	3 cut(s)	220, 243, 1285
BmiI	GGNNCC	4 cut(s)	804, 859, 1217, 1261
BmrFI	CCNGG	1 cut(s)	1163
BmsI	GCATC	5 cut(s)	422, 499, 513, 943, 1186
Bpu10I	CCTNAGC	1 cut(s)	1143
Bpu1102I	GCTNAGC	1 cut(s)	966
BpuEI	CTTGAG	3 cut(s)	498, 918, 924
BpuMI	CCSGG	1 cut(s)	1163
BsaAI	YACGTR	2 cut(s)	428, 959
BsaJI	CCNNGG	4 cut(s)	201, 488, 1002, 1162
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	1142, 1172
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	4 cut(s)	388, 679, 1025, 1134
Bse21I	CCTNAGG	1 cut(s)	786
Bse3DI	GCAATG	1 cut(s)	1184
BseDI	CCNNGG	4 cut(s)	201, 488, 1002, 1162
BseGI	GGATG	5 cut(s)	154, 437, 484, 1081, 1177
BseMI	GCAATG	1 cut(s)	1184
BseMII	CTCAG	3 cut(s)	534, 1055, 1134
BseNI	ACTGG	4 cut(s)	388, 679, 1025, 1134
BseRI	GAGGAG	2 cut(s)	167, 1252
BseXI	GCAGC	5 cut(s)	403, 406, 625, 854, 1022
BsgI	GTGCAG	1 cut(s)	389
BshFI	GGCC	5 cut(s)	217, 245, 678, 791, 1034
BsiHKAI	GWGCWC	2 cut(s)	497, 907
BsiHKCI	CYCGRG	2 cut(s)	38, 806
BsiSI	CCGG	5 cut(s)	170, 218, 308, 767, 1162
BsmAI	GTCTC	1 cut(s)	539
BsnI	GGCC	5 cut(s)	217, 245, 678, 791, 1034
BsoBI	CYCGRG	2 cut(s)	38, 806
Bsp1286I	GDGCHC	2 cut(s)	497, 907
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	5 cut(s)	392, 481, 604, 769, 1226
Bsp1720I	GCTNAGC	1 cut(s)	966
BspACI	CCGC	4 cut(s)	5, 59, 845, 884
BspANI	GGCC	5 cut(s)	217, 245, 678, 791, 1034
BspCNI	CTCAG	3 cut(s)	535, 1056, 1135
BspLI	GGNNCC	4 cut(s)	804, 859, 1217, 1261
BspMAI	CTGCAG	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	2 cut(s)	777, 1234
BsrDI	GCAATG	1 cut(s)	1184
BsrFI	RCCGGY	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	775
BsrI	ACTGG	4 cut(s)	388, 679, 1025, 1134
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	4 cut(s)	201, 488, 1002, 1162
BssMI	GATC	5 cut(s)	392, 481, 604, 769, 1226
BssT1I	CCWWGG	2 cut(s)	488, 1002
Bst4CI	ACNGT	4 cut(s)	626, 815, 1255, 1298
BstAUI	TGTACA	1 cut(s)	775
BstBAI	YACGTR	2 cut(s)	428, 959
BstC8I	GCNNGC	3 cut(s)	46, 372, 882
BstDEI	CTNAG	7 cut(s)	212, 543, 660, 786, 966, 1064, 1143
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	5 cut(s)	154, 437, 484, 1081, 1177
BstKTI	GATC	5 cut(s)	395, 484, 607, 772, 1229
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	5 cut(s)	392, 481, 604, 769, 1226
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 962
BstNSI	RCATGY	2 cut(s)	48, 884
BstSCI	CCNGG	1 cut(s)	1161
BstSFI	CTRYAG	1 cut(s)	118
BstV1I	GCAGC	5 cut(s)	403, 406, 625, 854, 1022
BstX2I	RGATCY	1 cut(s)	1226
BstYI	RGATCY	1 cut(s)	1226
Bsu36I	CCTNAGG	1 cut(s)	786
BsuRI	GGCC	5 cut(s)	217, 245, 678, 791, 1034
BtgI	CCRYGG	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	288
BtrI	CACGTC	2 cut(s)	54, 1304
BtsCI	GGATG	5 cut(s)	154, 437, 484, 1081, 1177
BtsIMutI	CAGTG	2 cut(s)	372, 1141
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	3 cut(s)	46, 372, 882
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	220, 243, 1285
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	3 cut(s)	776, 816, 1108
CviAII	CATG	8 cut(s)	45, 49, 773, 862, 881, 921, 1056, 1317
CviQI	GTAC	3 cut(s)	776, 816, 1108
DdeI	CTNAG	7 cut(s)	212, 543, 660, 786, 966, 1064, 1143
DpnI	GATC	5 cut(s)	394, 483, 606, 771, 1228
DpnII	GATC	5 cut(s)	392, 481, 604, 769, 1226
Ecl136II	GAGCTC	2 cut(s)	495, 905
Eco130I	CCWWGG	2 cut(s)	488, 1002
Eco147I	AGGCCT	1 cut(s)	1034
Eco24I	GRGCYC	2 cut(s)	497, 907
Eco32I	GATATC	2 cut(s)	238, 1050
Eco47I	GGWCC	2 cut(s)	220, 1285
Eco53kI	GAGCTC	2 cut(s)	495, 905
Eco57I	CTGAAG	2 cut(s)	279, 459
Eco72I	CACGTG	1 cut(s)	959
Eco81I	CCTNAGG	1 cut(s)	786
Eco88I	CYCGRG	2 cut(s)	38, 806
EcoICRI	GAGCTC	2 cut(s)	495, 905
EcoRV	GATATC	2 cut(s)	238, 1050
EcoT14I	CCWWGG	2 cut(s)	488, 1002
EcoT22I	ATGCAT	1 cut(s)	50
EcoT38I	GRGCYC	2 cut(s)	497, 907
ErhI	CCWWGG	2 cut(s)	488, 1002
FaeI	CATG	8 cut(s)	48, 52, 776, 865, 884, 924, 1059, 1320
FalI	AAGNNNNNCTT	2 cut(s)	933, 965
FatI	CATG	8 cut(s)	44, 48, 772, 861, 880, 920, 1055, 1316
FauI	CCCGC	1 cut(s)	877
FauNDI	CATATG	1 cut(s)	780
FblI	GTMKAC	2 cut(s)	196, 1300
Fnu4HI	GCNGC	6 cut(s)	417, 420, 639, 843, 846, 1011
FokI	GGATG	5 cut(s)	161, 444, 471, 1088, 1164
FriOI	GRGCYC	2 cut(s)	497, 907
Fsp4HI	GCNGC	6 cut(s)	417, 420, 639, 843, 846, 1011
FspBI	CTAG	2 cut(s)	498, 1202
GluI	GCNGC	6 cut(s)	417, 420, 639, 843, 846, 1011
HaeIII	GGCC	5 cut(s)	217, 245, 678, 791, 1034
HapII	CCGG	5 cut(s)	170, 218, 308, 767, 1162
HgaI	GACGC	1 cut(s)	764
Hin1II	CATG	8 cut(s)	48, 52, 776, 865, 884, 924, 1059, 1320
HincII	GTYRAC	1 cut(s)	1301
HindII	GTYRAC	1 cut(s)	1301
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	6 cut(s)	287, 470, 530, 761, 917, 926
HpaII	CCGG	5 cut(s)	170, 218, 308, 767, 1162
HphI	GGTGA	2 cut(s)	282, 495
Hpy166II	GTNNAC	4 cut(s)	197, 612, 728, 1301
Hpy188I	TCNGA	5 cut(s)	148, 478, 697, 1104, 1220
Hpy188III	TCNNGA	2 cut(s)	396, 515
Hpy8I	GTNNAC	4 cut(s)	197, 612, 728, 1301
Hpy99I	CGWCG	2 cut(s)	270, 1305
HpyAV	CCTTC	4 cut(s)	303, 313, 443, 587
HpyCH4III	ACNGT	4 cut(s)	626, 815, 1255, 1298
HpyCH4IV	ACGT	5 cut(s)	53, 113, 427, 958, 1303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 962
HpyF3I	CTNAG	7 cut(s)	212, 543, 660, 786, 966, 1064, 1143
HpySE526I	ACGT	5 cut(s)	53, 113, 427, 958, 1303
Hsp92II	CATG	8 cut(s)	48, 52, 776, 865, 884, 924, 1059, 1320
Kzo9I	GATC	5 cut(s)	392, 481, 604, 769, 1226
LmnI	GCTCC	5 cut(s)	452, 492, 902, 910, 1265
Lsp1109I	GCAGC	5 cut(s)	403, 406, 625, 854, 1022
LweI	GCATC	5 cut(s)	422, 499, 513, 943, 1186
MaeI	CTAG	2 cut(s)	498, 1202
MaeII	ACGT	5 cut(s)	53, 113, 427, 958, 1303
MaeIII	GTNAC	4 cut(s)	850, 1058, 1090, 1242
MalI	GATC	5 cut(s)	394, 483, 606, 771, 1228
MboI	GATC	5 cut(s)	392, 481, 604, 769, 1226
MboII	GAAGA	7 cut(s)	327, 465, 479, 491, 525, 990, 1129
MflI	RGATCY	1 cut(s)	1226
MhlI	GDGCHC	2 cut(s)	497, 907
MluCI	AATT	2 cut(s)	180, 667
MlyI	GAGTC	1 cut(s)	926
MmeI	TCCRAC	2 cut(s)	126, 1205
Mph1103I	ATGCAT	1 cut(s)	50
MseI	TTAA	6 cut(s)	18, 24, 261, 276, 312, 620
MspA1I	CMGCKG	2 cut(s)	845, 1013
MspI	CCGG	5 cut(s)	170, 218, 308, 767, 1162
MspR9I	CCNGG	1 cut(s)	1163
MwoI	GCNNNNNNNGC	2 cut(s)	41, 962
NciI	CCSGG	1 cut(s)	1163
NdeI	CATATG	1 cut(s)	780
NdeII	GATC	5 cut(s)	392, 481, 604, 769, 1226
NlaIII	CATG	8 cut(s)	48, 52, 776, 865, 884, 924, 1059, 1320
NlaIV	GGNNCC	4 cut(s)	804, 859, 1217, 1261
NsiI	ATGCAT	1 cut(s)	50
NspI	RCATGY	2 cut(s)	48, 884
PaeI	GCATGC	2 cut(s)	48, 884
PaeR7I	CTCGAG	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	1034
PfeI	GAWTC	5 cut(s)	287, 470, 530, 761, 926
PkrI	GCNGC	6 cut(s)	418, 421, 640, 844, 847, 1012
PleI	GAGTC	1 cut(s)	925
PmaCI	CACGTG	1 cut(s)	959
PmlI	CACGTG	1 cut(s)	959
PpsI	GAGTC	1 cut(s)	925
Ppu21I	YACGTR	2 cut(s)	428, 959
Psp124BI	GAGCTC	2 cut(s)	497, 907
PspCI	CACGTG	1 cut(s)	959
PspN4I	GGNNCC	4 cut(s)	804, 859, 1217, 1261
PspPI	GGNCC	3 cut(s)	220, 243, 1285
PspXI	VCTCGAGB	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	1226
PvuII	CAGCTG	1 cut(s)	1013
RsaI	GTAC	3 cut(s)	777, 817, 1109
RsaNI	GTAC	3 cut(s)	776, 816, 1108
SacI	GAGCTC	2 cut(s)	497, 907
SalI	GTCGAC	1 cut(s)	1299
SaqAI	TTAA	6 cut(s)	18, 24, 261, 276, 312, 620
SatI	GCNGC	6 cut(s)	417, 420, 639, 843, 846, 1011
Sau3AI	GATC	5 cut(s)	392, 481, 604, 769, 1226
Sau96I	GGNCC	3 cut(s)	220, 243, 1285
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	1 cut(s)	1163
SduI	GDGCHC	2 cut(s)	497, 907
SfaNI	GCATC	5 cut(s)	422, 499, 513, 943, 1186
SfcI	CTRYAG	1 cut(s)	118
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	2 cut(s)	220, 1285
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	4 cut(s)	38, 513, 933, 939
SmoI	CTYRAG	4 cut(s)	38, 513, 933, 939
SphI	GCATGC	2 cut(s)	48, 884
Sse9I	AATT	2 cut(s)	180, 667
SseBI	AGGCCT	1 cut(s)	1034
SsiI	CCGC	4 cut(s)	5, 59, 845, 884
SspMI	CTAG	2 cut(s)	498, 1202
SstI	GAGCTC	2 cut(s)	497, 907
StuI	AGGCCT	1 cut(s)	1034
StyD4I	CCNGG	1 cut(s)	1161
StyI	CCWWGG	2 cut(s)	488, 1002
TaaI	ACNGT	4 cut(s)	626, 815, 1255, 1298
TaiI	ACGT	5 cut(s)	56, 116, 430, 961, 1306
TaqI	TCGA	2 cut(s)	39, 1300
TasI	AATT	2 cut(s)	180, 667
TatI	WGTACW	2 cut(s)	775, 815
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	5 cut(s)	287, 470, 530, 761, 926
Tru1I	TTAA	6 cut(s)	18, 24, 261, 276, 312, 620
Tru9I	TTAA	6 cut(s)	18, 24, 261, 276, 312, 620
TscAI	CASTG	2 cut(s)	372, 1141
TseI	GCWGC	5 cut(s)	416, 419, 638, 842, 1010
TspDTI	ATGAA	3 cut(s)	291, 327, 878
TspGWI	ACGGA	2 cut(s)	283, 897
TspRI	CASTG	2 cut(s)	372, 1141
VpaK11BI	GGWCC	2 cut(s)	220, 1285
XapI	RAATTY	1 cut(s)	667
XceI	RCATGY	2 cut(s)	48, 884
XhoI	CTCGAG	1 cut(s)	38
XmiI	GTMKAC	2 cut(s)	196, 1300
XspI	CTAG	2 cut(s)	498, 1202
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.