Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001656

Physical Location & Seq

Genomic Coordinates Forward (+)

29591727 .. 29596057

Gene Structure 4331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G344100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGCGGGTCAGGTGGTGAAAGTGAAGAGGGAGACACTGGAGGCATGCATGACGTGCCCTCTTTGTAATAAGCTATTGAAGGAGGCTACAACCATATCACTCTGCCTTCATACGTTTTGCAGGAAATGCATTTATGAGAAGCTTTCAGATGAGGAGGTGGACTGCTGTCCTGTATGCAATATTGATCTGGGCTGTCTACCAGTGGAAAAACTCAGGCCAGACCATAATTTGCAAGATATTAGAGCCAAGATATTTCCCCTTAAACGAAGGAAAATCGATGCACCTGAAATTACTCCCGAAGTAACTCCGGAAGTTACTCATGAAGTTACACCTTCAATTTCATTGCCAGTGAAAAGGAAGGAGAGATCATTATCTTCATTAGTAGTTAGTACCCCAAAAGTTCCAATGCAGACTGGTTTGACTGGAAGGAGATCAAGAGCTTTGACCAGAAAGGCTGCTGCTTTACGAGGATGCAGTTTTTCTGCTGAAGAACCTGTGAAGAGAGATGATTCTACAGAAGATCATCCAATGAGTTCTAGTTCAACTGAAACTCTTGATAGGGGTCCACGAAATAAGATGCAGGACTCGCCCGAGCCTTCACATCAGCAAAACCCTAATAGAGATATGAATAATGACGTTGAAATAATAGAAGGCAAAGCTGATCTGTGGACACCCTTAAACTGTCTTGTAGAGGCTGCTAACCGAACCAAGTCTTCTAAGTCAAATTCACAAGGGCTGTTCCATGCCAAATCAGAGCCACTCAATGCCCTTGATGGTGAACTTTATATGTCGGAAAATAAGGCAGCAGAAGAAAAATCACCAAATACTCTGGATAGTGATGCTTATATGCCTAAAACAAAACTAAAGGAGCCCGGACAAAGTGCAAGAGGAAAAAATAACAGTAACGGGACAGGGGTTGCAGGACCGGTGAAAAATAGAAGGTTGCGAGCAGGTAATCGTAACAGGGTAGCTCCATCTGGGGAGTCAAGTGCTTCGGCTCAAGCTATGTTAGATGCATGTGGAGATAAGCATAGCAGAAGAAATAGTACTATTTGGTTCTCCTTGGTTGCAACTGAAAATTGGAAAGGAGATGGTTCCTTGCCACAGATACCATCATCTTACTTGAGAATAAAGGATGGTAAAATGCCTGTATCATTCATCCAGAAGTACCTTGCGAAGAAACTTGAACTTAACAGTGAAGATGAGGTGGAGATAATGTGCCGGGGTCAGTCAGTGCTTCCGACATTGCAACTAGAAAACCTAGTAGATCTCTGGTTTCGAACAGCAACAACACCAAAAAAGGTACCGGCAGTAGTTGGCTCCTCAGCCAAAGATTTTGTGATGACCCTCTCATATTGTCGAAGGGTCCAAAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

460

Amino Acids

50.81

Weight (kDa)

8.91

Isoelectric Point (pI)

62.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580
fragaria_vesca	FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710
malus_domestica	MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1
prunus_persica	Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1
pyrus_communis	pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160
rosa_chinensis	RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351
rosa_laevigata	RLG00000012310 RLG00000025707
rosa_multiflora	Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428390 Rroxscaffold_7G00179330
rosa_rugosa	Rorug02G0629900 Rorug02G0630000 Rorug06G0202900
rosa_samantha	Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200
rosa_wichuraiana	Rw3G002380 Rw6G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	941
Acc65I	GGTACC	1 cut(s)	1303
AccB1I	GGYRCC	1 cut(s)	1303
AccI	GTMKAC	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	724
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	4 cut(s)	391, 1048, 1169, 1305
AgeI	ACCGGT	1 cut(s)	925
AgsI	TTSAA	5 cut(s)	79, 336, 543, 641, 1187
AjiI	CACGTC	1 cut(s)	54
AluBI	AGCT	6 cut(s)	73, 142, 440, 659, 971, 1004
AluI	AGCT	6 cut(s)	73, 142, 440, 659, 971, 1004
Alw26I	GTCTC	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	590
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	4 cut(s)	455, 458, 695, 803
ApoI	RAATTY	1 cut(s)	724
AsiGI	ACCGGT	1 cut(s)	925
Asp718I	GGTACC	1 cut(s)	1303
AspS9I	GGNCC	3 cut(s)	563, 923, 1366
AsuC2I	CCSGG	2 cut(s)	873, 1223
AsuHPI	GGTGA	4 cut(s)	28, 788, 810, 940
AsuII	TTCGAA	1 cut(s)	1279
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	3 cut(s)	563, 923, 1366
BaeGI	GKGCMC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	1303
BanII	GRGCYC	1 cut(s)	873
BarI	GAAGNNNNNNTAC	2 cut(s)	1030, 1062
BbsI	GAAGAC	1 cut(s)	705
BbvCI	CCTCAGC	1 cut(s)	1324
BbvI	GCAGC	4 cut(s)	442, 445, 682, 815
BccI	CCATC	5 cut(s)	767, 982, 1085, 1120, 1130
BcnI	CCSGG	2 cut(s)	873, 1223
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	3 cut(s)	537, 1253, 1262
BfmI	CTRYAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	941
BglII	AGATCT	1 cut(s)	1267
BisI	GCNGC	4 cut(s)	456, 459, 696, 804
BlsI	GCNGC	4 cut(s)	457, 460, 697, 805
BmcAI	AGTACT	1 cut(s)	1048
Bme1390I	CCNGG	2 cut(s)	873, 1223
Bme18I	GGWCC	3 cut(s)	563, 923, 1366
BmeT110I	CYCGRG	1 cut(s)	590
BmgBI	CACGTC	1 cut(s)	54
BmgT120I	GGNCC	3 cut(s)	563, 923, 1366
BmiI	GGNNCC	6 cut(s)	564, 870, 1096, 1305, 1321, 1367
BmrFI	CCNGG	2 cut(s)	873, 1223
BmsI	GCATC	5 cut(s)	268, 461, 567, 829, 1003
BoxI	GACNNNNGTC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	705
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	1324
Bpu14I	TTCGAA	1 cut(s)	1279
BpuEI	CTTGAG	2 cut(s)	984, 1144
BpuMI	CCSGG	2 cut(s)	873, 1223
Bsa29I	ATCGAT	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	1062, 1222
BsaWI	WCCGGW	2 cut(s)	307, 925
BsaXI	ACNNNNNCTCC	2 cut(s)	1202, 1232
Bse118I	RCCGGY	2 cut(s)	925, 1306
Bse1I	ACTGG	5 cut(s)	42, 200, 347, 418, 427
Bse3DI	GCAATG	2 cut(s)	341, 1244
Bse8I	GATNNNNATC	1 cut(s)	370
BseAI	TCCGGA	1 cut(s)	307
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	1062, 1222
BseGI	GGATG	4 cut(s)	476, 523, 1141, 1158
BseJI	GATNNNNATC	1 cut(s)	370
BseMI	GCAATG	2 cut(s)	341, 1244
BseMII	CTCAG	2 cut(s)	226, 1338
BseNI	ACTGG	5 cut(s)	42, 200, 347, 418, 427
BseRI	GAGGAG	2 cut(s)	167, 1312
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	4 cut(s)	442, 445, 682, 815
BshFI	GGCC	1 cut(s)	217
BshNI	GGYRCC	1 cut(s)	1303
BshTI	ACCGGT	1 cut(s)	925
BshVI	ATCGAT	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	590
BsiSI	CCGG	5 cut(s)	308, 873, 926, 1222, 1307
BslFI	GGGAC	1 cut(s)	922
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	922
BsnI	GGCC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	590
Bsp119I	TTCGAA	1 cut(s)	1279
Bsp1286I	GDGCHC	2 cut(s)	59, 873
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	6 cut(s)	184, 365, 431, 520, 661, 1267
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	225, 1337
BspDI	ATCGAT	1 cut(s)	276
BspEI	TCCGGA	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	6 cut(s)	564, 870, 1096, 1305, 1321, 1367
BspMI	ACCTGC	1 cut(s)	941
BspT104I	TTCGAA	1 cut(s)	1279
BspT107I	GGYRCC	1 cut(s)	1303
BsrDI	GCAATG	2 cut(s)	341, 1244
BsrFI	RCCGGY	2 cut(s)	925, 1306
BsrI	ACTGG	5 cut(s)	42, 200, 347, 418, 427
BssAI	RCCGGY	2 cut(s)	925, 1306
BssECI	CCNNGG	2 cut(s)	1062, 1222
BssMI	GATC	6 cut(s)	184, 365, 431, 520, 661, 1267
BssT1I	CCWWGG	1 cut(s)	1062
Bst4CI	ACNGT	3 cut(s)	683, 902, 1196
Bst6I	CTCTTC	2 cut(s)	20, 494
BstAPI	GCANNNNNTGC	2 cut(s)	54, 126
BstBI	TTCGAA	1 cut(s)	1279
BstC8I	GCNNGC	2 cut(s)	46, 948
BstDEI	CTNAG	3 cut(s)	212, 717, 1324
BstF5I	GGATG	4 cut(s)	476, 523, 1141, 1158
BstKTI	GATC	6 cut(s)	187, 368, 434, 523, 664, 1270
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	6 cut(s)	184, 365, 431, 520, 661, 1267
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 126, 586
BstNSI	RCATGY	2 cut(s)	48, 1020
BstPAI	GACNNNNGTC	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	871, 1221
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	4 cut(s)	442, 445, 682, 815
BstV2I	GAAGAC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	1267
BstYI	RGATCY	1 cut(s)	1267
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	217
BsuTUI	ATCGAT	1 cut(s)	276
BtrI	CACGTC	1 cut(s)	54
BtsCI	GGATG	4 cut(s)	476, 523, 1141, 1158
BtsIMutI	CAGTG	5 cut(s)	35, 207, 354, 1201, 1239
BveI	ACCTGC	1 cut(s)	941
Cac8I	GCNNGC	2 cut(s)	46, 948
CciI	TCATGA	1 cut(s)	319
Cfr10I	RCCGGY	2 cut(s)	925, 1306
Cfr13I	GGNCC	3 cut(s)	563, 923, 1366
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	4 cut(s)	390, 1047, 1168, 1304
CspAI	ACCGGT	1 cut(s)	925
CviAII	CATG	5 cut(s)	45, 49, 320, 743, 1017
CviQI	GTAC	4 cut(s)	390, 1047, 1168, 1304
DdeI	CTNAG	3 cut(s)	212, 717, 1324
DpnI	GATC	6 cut(s)	186, 367, 433, 522, 663, 1269
DpnII	GATC	6 cut(s)	184, 365, 431, 520, 661, 1267
Eam1104I	CTCTTC	2 cut(s)	20, 494
EarI	CTCTTC	2 cut(s)	20, 494
Eco130I	CCWWGG	1 cut(s)	1062
Eco24I	GRGCYC	1 cut(s)	873
Eco47I	GGWCC	3 cut(s)	563, 923, 1366
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	1062
EcoT22I	ATGCAT	3 cut(s)	50, 131, 1018
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	1062
FaeI	CATG	5 cut(s)	48, 52, 323, 746, 1020
FaqI	GGGAC	1 cut(s)	922
FatI	CATG	5 cut(s)	44, 48, 319, 742, 1016
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	456, 459, 696, 804
FokI	GGATG	4 cut(s)	483, 510, 1145, 1148
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	4 cut(s)	456, 459, 696, 804
FspBI	CTAG	3 cut(s)	537, 1253, 1262
GluI	GCNGC	4 cut(s)	456, 459, 696, 804
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	5 cut(s)	308, 873, 926, 1222, 1307
Hin1II	CATG	5 cut(s)	48, 52, 323, 746, 1020
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	3 cut(s)	509, 584, 983
HpaII	CCGG	5 cut(s)	308, 873, 926, 1222, 1307
HphI	GGTGA	4 cut(s)	28, 788, 810, 940
Hpy166II	GTNNAC	5 cut(s)	160, 197, 566, 669, 779
Hpy188I	TCNGA	4 cut(s)	148, 754, 793, 1242
Hpy188III	TCNNGA	7 cut(s)	296, 308, 320, 435, 554, 830, 1162
Hpy8I	GTNNAC	5 cut(s)	160, 197, 566, 669, 779
HpyCH4III	ACNGT	3 cut(s)	683, 902, 1196
HpyCH4IV	ACGT	3 cut(s)	53, 113, 636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 126, 586
HpyF3I	CTNAG	3 cut(s)	212, 717, 1324
HpySE526I	ACGT	3 cut(s)	53, 113, 636
Hsp92II	CATG	5 cut(s)	48, 52, 323, 746, 1020
Kpn2I	TCCGGA	1 cut(s)	307
KpnI	GGTACC	1 cut(s)	1307
Kzo9I	GATC	6 cut(s)	184, 365, 431, 520, 661, 1267
LmnI	GCTCC	3 cut(s)	868, 976, 1325
Lsp1109I	GCAGC	4 cut(s)	442, 445, 682, 815
LweI	GCATC	5 cut(s)	268, 461, 567, 829, 1003
MaeI	CTAG	3 cut(s)	537, 1253, 1262
MaeII	ACGT	3 cut(s)	53, 113, 636
MaeIII	GTNAC	5 cut(s)	301, 313, 325, 902, 959
MalI	GATC	6 cut(s)	186, 367, 433, 522, 663, 1269
MboI	GATC	6 cut(s)	184, 365, 431, 520, 661, 1267
MflI	RGATCY	1 cut(s)	1267
MhlI	GDGCHC	2 cut(s)	59, 873
MluCI	AATT	5 cut(s)	226, 288, 336, 724, 1078
MlyI	GAGTC	2 cut(s)	578, 992
MmeI	TCCRAC	2 cut(s)	771, 1265
Mph1103I	ATGCAT	3 cut(s)	50, 131, 1018
MroI	TCCGGA	1 cut(s)	307
MseI	TTAA	3 cut(s)	261, 677, 1191
MspI	CCGG	5 cut(s)	308, 873, 926, 1222, 1307
MspR9I	CCNGG	2 cut(s)	873, 1223
MwoI	GCNNNNNNNGC	3 cut(s)	54, 126, 586
NciI	CCSGG	2 cut(s)	873, 1223
NdeII	GATC	6 cut(s)	184, 365, 431, 520, 661, 1267
NlaIII	CATG	5 cut(s)	48, 52, 323, 746, 1020
NlaIV	GGNNCC	6 cut(s)	564, 870, 1096, 1305, 1321, 1367
NsiI	ATGCAT	3 cut(s)	50, 131, 1018
NspI	RCATGY	2 cut(s)	48, 1020
NspV	TTCGAA	1 cut(s)	1279
PaeI	GCATGC	1 cut(s)	48
PagI	TCATGA	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	509
PinAI	ACCGGT	1 cut(s)	925
PkrI	GCNGC	4 cut(s)	457, 460, 697, 805
PleI	GAGTC	2 cut(s)	578, 991
PpsI	GAGTC	2 cut(s)	578, 991
PshAI	GACNNNNGTC	1 cut(s)	165
PspN4I	GGNNCC	6 cut(s)	564, 870, 1096, 1305, 1321, 1367
PspPI	GGNCC	3 cut(s)	563, 923, 1366
PsuI	RGATCY	1 cut(s)	1267
RsaI	GTAC	4 cut(s)	391, 1048, 1169, 1305
RsaNI	GTAC	4 cut(s)	390, 1047, 1168, 1304
SaqAI	TTAA	3 cut(s)	261, 677, 1191
SatI	GCNGC	4 cut(s)	456, 459, 696, 804
Sau3AI	GATC	6 cut(s)	184, 365, 431, 520, 661, 1267
Sau96I	GGNCC	3 cut(s)	563, 923, 1366
ScaI	AGTACT	1 cut(s)	1048
SchI	GAGTC	2 cut(s)	578, 992
ScrFI	CCNGG	2 cut(s)	873, 1223
SduI	GDGCHC	2 cut(s)	59, 873
SfaNI	GCATC	5 cut(s)	268, 461, 567, 829, 1003
SfcI	CTRYAG	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	1279
SinI	GGWCC	3 cut(s)	563, 923, 1366
SmlI	CTYRAG	2 cut(s)	999, 1123
SmoI	CTYRAG	2 cut(s)	999, 1123
SphI	GCATGC	1 cut(s)	48
Sse9I	AATT	5 cut(s)	226, 288, 336, 724, 1078
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	3 cut(s)	537, 1253, 1262
StyD4I	CCNGG	2 cut(s)	871, 1221
StyI	CCWWGG	1 cut(s)	1062
TaaI	ACNGT	3 cut(s)	683, 902, 1196
TaiI	ACGT	3 cut(s)	56, 116, 639
TaqI	TCGA	3 cut(s)	276, 1279, 1360
TasI	AATT	5 cut(s)	226, 288, 336, 724, 1078
TatI	WGTACW	1 cut(s)	1046
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	3 cut(s)	261, 677, 1191
Tru9I	TTAA	3 cut(s)	261, 677, 1191
TscAI	CASTG	5 cut(s)	42, 207, 354, 1201, 1239
TseI	GCWGC	4 cut(s)	455, 458, 695, 803
TspDTI	ATGAA	6 cut(s)	98, 330, 336, 366, 641, 1147
TspRI	CASTG	5 cut(s)	42, 207, 354, 1201, 1239
VpaK11BI	GGWCC	3 cut(s)	563, 923, 1366
XapI	RAATTY	1 cut(s)	724
XceI	RCATGY	2 cut(s)	48, 1020
XmiI	GTMKAC	1 cut(s)	196
XspI	CTAG	3 cut(s)	537, 1253, 1262
ZrmI	AGTACT	1 cut(s)	1048
Zsp2I	ATGCAT	3 cut(s)	50, 131, 1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.