Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001656

Physical Location & Seq

Genomic Coordinates Forward (+)

74446684 .. 74449014

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0629900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCTAAGATCTCACACCAATCAGTGGCTACGCCTACTAGCTTGGCCTCGGTGTCCACTATTCCGGCTTGCAAGATATCAGAGGTTGTGAACAACATGAAAGATTTGATCGAATTCTGCCAGGAAAACAAAGTTGGCCCAATTGAGGGCTTGCAGGTTCATCCTCGACATGCGAATGCAACCAAGCTTCAGATGCAAAGGATGCACGAAATGGAGCAGTTAGCAAGTGTTCAGGGCATGCCAACTGATAGGAACACATTGAATAAGCTAATGGTAATAACAACCATCACATGGCCAGGGGAGGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2

Protein Analysis

103

Amino Acids

11.44

Weight (kDa)

6.4

Isoelectric Point (pI)

53.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06770 AT1G06770 AT1G06770 AT2G30580 AT2G30580 AT2G30580
fragaria_vesca	FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22360 FvH4_2g22400 FvH4_6g02710 FvH4_6g02710
malus_domestica	MD04G1225500.v1.1 MD05G1204700.v1.1 MD10G1191800.v1.1 MD12G1242500.v1.1
prunus_persica	Prupe.6G344100_v2.0.a1 Prupe.6G344100_v2.0.a1 Prupe.8G231300_v2.0.a1
pyrus_communis	pycom04g19880 pycom05g19090 pycom10g16540 pycom12g22160
rosa_chinensis	RchiOBHm_Chr3g0450721 RchiOBHm_Chr6g0289351
rosa_laevigata	RLG00000012310 RLG00000025707
rosa_multiflora	Rmu_sc0000078.1_g000029 Rmu_sc0041561.1_g000001
rosa_roxburghii	Rroxscaffold_6G00428390 Rroxscaffold_7G00179330
rosa_rugosa	Rorug02G0629900 Rorug02G0630000 Rorug06G0202900
rosa_samantha	Rh3AG030800 Rh3BG031300 Rh3CG030100 Rh3DG031000 Rh6AG313800 Rh6BG321300 Rh6CG327600 Rh6DG313200
rosa_wichuraiana	Rw3G002380 Rw6G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AccB7I	CCANNNNNTGG	2 cut(s)	25, 291
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	4 cut(s)	25, 145, 146, 291
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	120, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	4 cut(s)	42, 187, 268, 307
AluI	AGCT	4 cut(s)	42, 187, 268, 307
AoxI	GGCC	3 cut(s)	45, 136, 293
ApoI	RAATTY	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	295
BccI	CCATC	1 cut(s)	293
BciT130I	CCWGG	2 cut(s)	122, 297
BfaI	CTAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	145
BglII	AGATCT	1 cut(s)	9
Bme1390I	CCNGG	2 cut(s)	122, 297
BmgT120I	GGNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	122, 297
BmsI	GCATC	2 cut(s)	183, 192
BsaJI	CCNNGG	2 cut(s)	48, 296
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 145, 146, 291
BseBI	CCWGG	2 cut(s)	122, 297
BseDI	CCNNGG	2 cut(s)	48, 296
BseGI	GGATG	2 cut(s)	160, 207
BseLI	CCNNNNNNNGG	4 cut(s)	25, 145, 146, 291
BshFI	GGCC	3 cut(s)	47, 138, 295
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	25, 145, 146, 291
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	47, 138, 295
Bsp143I	GATC	2 cut(s)	9, 108
BspANI	GGCC	3 cut(s)	47, 138, 295
BspMI	ACCTGC	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	48, 296
BssMI	GATC	2 cut(s)	9, 108
Bst2UI	CCWGG	2 cut(s)	122, 297
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstC8I	GCNNGC	3 cut(s)	70, 152, 239
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	160, 207
BstKTI	GATC	2 cut(s)	12, 111
BstMBI	GATC	2 cut(s)	9, 108
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 202
BstNI	CCWGG	2 cut(s)	122, 297
BstNSI	RCATGY	2 cut(s)	173, 241
BstSCI	CCNGG	2 cut(s)	120, 295
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	3 cut(s)	47, 138, 295
BtsCI	GGATG	2 cut(s)	160, 207
BtsIMutI	CAGTG	1 cut(s)	30
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	70, 152, 239
Cfr13I	GGNCC	1 cut(s)	137
CviAII	CATG	4 cut(s)	97, 170, 238, 291
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	11, 110
DpnII	GATC	2 cut(s)	9, 108
EaeI	YGGCCR	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	120, 295
EcoRV	GATATC	1 cut(s)	78
FaeI	CATG	4 cut(s)	100, 173, 241, 294
FaiI	YATR	4 cut(s)	98, 171, 239, 292
FatI	CATG	4 cut(s)	96, 169, 237, 290
FokI	GGATG	2 cut(s)	147, 214
FspBI	CTAG	1 cut(s)	39
HaeIII	GGCC	3 cut(s)	47, 138, 295
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	4 cut(s)	100, 173, 241, 294
HindIII	AAGCTT	1 cut(s)	185
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	57, 91
Hpy188I	TCNGA	2 cut(s)	82, 192
Hpy8I	GTNNAC	2 cut(s)	57, 91
HpyCH4V	TGCA	5 cut(s)	72, 154, 179, 196, 205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 202
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	100, 173, 241, 294
Kzo9I	GATC	2 cut(s)	9, 108
LmnI	GCTCC	2 cut(s)	214, 304
LpnPI	CCDG	6 cut(s)	78, 107, 134, 140, 218, 282
LweI	GCATC	2 cut(s)	183, 192
MaeI	CTAG	1 cut(s)	39
MalI	GATC	2 cut(s)	11, 110
MboI	GATC	2 cut(s)	9, 108
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	295
MluCI	AATT	2 cut(s)	113, 141
MluNI	TGGCCA	1 cut(s)	295
MnlI	CCTC	5 cut(s)	58, 76, 139, 174, 295
Mox20I	TGGCCA	1 cut(s)	295
MscI	TGGCCA	1 cut(s)	295
MslI	CAYNNNNRTG	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	295
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	122, 297
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	2 cut(s)	122, 297
MwoI	GCNNNNNNNGC	2 cut(s)	193, 202
NdeII	GATC	2 cut(s)	9, 108
NlaIII	CATG	4 cut(s)	100, 173, 241, 294
NspI	RCATGY	2 cut(s)	173, 241
PaeI	GCATGC	1 cut(s)	241
PctI	GAATGC	1 cut(s)	181
PflMI	CCANNNNNTGG	2 cut(s)	25, 291
Psp6I	CCWGG	2 cut(s)	120, 295
PspGI	CCWGG	2 cut(s)	120, 295
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	9, 108
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	122, 297
SetI	ASST	6 cut(s)	44, 87, 159, 189, 270, 309
SfaNI	GCATC	2 cut(s)	183, 192
SmiMI	CAYNNNNRTG	1 cut(s)	174
SphI	GCATGC	1 cut(s)	241
Sse9I	AATT	2 cut(s)	113, 141
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	120, 295
TaqI	TCGA	2 cut(s)	111, 166
TasI	AATT	2 cut(s)	113, 141
TscAI	CASTG	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	113, 149
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	2 cut(s)	25, 291
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	2 cut(s)	173, 241
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.