AT1G08450

Calreticulin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
2667798 .. 2671957
4160 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08450.2

Sequence Viewer

Length: 1275 bp
ATGGGATTACCTCAAAATAAGCTCAGTTTTTTCTGCTTCTTCTTCCTCGTCTCTGTACTAACTCTTGCCCCATTGGCTTTCTCCGAGATCTTCTTAGAGGAGCATTTCGAAGGTGGATGGAAAAGTAGGTGGGTCTTGTCTGATTGGAAAAGAAACGAAGGCAAAGCTGGAACCTTTAAGCACACTGCCGGTAAATGGCCCGGCGATCCTGACAATAAAGGTATTCAGACTTATAATGATGCCAAGCATTATGCGATTTCTGCAAAGATTCCTGAGTTTAGCAACAAAAACCGGACTCTTGTTGTCCAGTACTCAGTCAAGATTGAACAAGACATTGAATGTGGTGGTGCTTACATTAAGCTCCTGTCTGGCTATGTTAACCAGAAGCAGTTTGGTGGTGATACTCCATACAGTCTAATGTTTGGACCAGATATATGCGGAACACAGACGAAGAAGCTTCATGTTATAGTTTCATATCAGGGACAGAATTATCCAATCAAAAAGGATTTGCAATGTGAAACAGACAAATTAAATCATTTCTACACATTTATTCTGCGTCCTGACGCTTCTTACAGCGTTCTGGTGGATAATAAAGAGAGAGAATTTGGCAGTATGTACACAGACTGGGACATCCTTCCTCCAAGGAAGATCAAGGTCAAGAATGCAAAGAAGCCAGAGGACTGGGATGATAGAGAGTACATCGATGACCCCAACGATGTCAAACCCGAGGGTTTTGATTCTATTCCACGTGAAATTCCAGATCGTAAAGCTAAAGAGCCCGAGGACTGGGACGAGGAAGAAAATGGTCTCTGGGAACCTCCAAAGATCCCAAATTCTGCGTACAAAGGTCCTTGGAAAGCAAAGAGAATCAAGAACCCGAACTACAAGGGAAAATGGAAGAACCCATGGATAGATAATCCAGAATTTGAAGATGATCCAGATCTTTACGTTCTGAAGTCTATCAAATATGCAGGCATTGAAGTATGGCAGGTGAAGGCTGGCTCAATCTTTGACAATATATTGATCTGCGATGACCCGGCATATGCAAGAAGCATCGTGGATGACTATTTTGCCCAACACAGGGAGTCTGAGAAGGAGTTATTTGCGGAAGCAGAGAAAGAAAGAAAAGCTAGAGAAGATGAGGAAGCTCGGATAGCACGGGAAGAAGGTGAACGCAGGCGGAAAGAAAGGGACCACCGGTATGGAGACAGGAGGAGGCGTTACAAACGGCCGAATCCACGTGATTATATGGATGATTACCATGACGAGCTATGA

Protein Analysis

424

Amino Acids

49.84

Weight (kDa)

5.81

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 34 - 139 2.8e-17 Calreticulin family
Calreticulin PF00262 134 - 214 6.1e-14 Calreticulin family
Calreticulin PF00262 215 - 288 5.1e-18 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AarI CACCTGC 1 cut(s) 979
Acc36I ACCTGC 1 cut(s) 979
AciI CCGC 3 cut(s) 438, 1106, 1180
AclWI GGATC 3 cut(s) 200, 820, 929
AcoI YGGCCR 1 cut(s) 1229
AcsI RAATTY 4 cut(s) 602, 753, 832, 923
AcuI CTGAAG 1 cut(s) 974
AcvI CACGTG 2 cut(s) 749, 1241
AfaI GTAC 5 cut(s) 57, 311, 617, 698, 842
AfiI CCNNNNNNNGG 4 cut(s) 195, 786, 1080, 1081
AgeI ACCGGT 1 cut(s) 1197
AgsI TTSAA 4 cut(s) 326, 338, 929, 980
AluBI AGCT 8 cut(s) 22, 167, 361, 457, 770, 1130, 1148, 1270
AluI AGCT 8 cut(s) 22, 167, 361, 457, 770, 1130, 1148, 1270
Alw26I GTCTC 3 cut(s) 55, 812, 1200
AlwI GGATC 3 cut(s) 200, 820, 929
Ama87I CYCGRG 2 cut(s) 725, 779
AoxI GGCC 2 cut(s) 197, 1229
ApoI RAATTY 4 cut(s) 602, 753, 832, 923
AsiGI ACCGGT 1 cut(s) 1197
AspS9I GGNCC 4 cut(s) 198, 425, 848, 1192
AsuC2I CCSGG 2 cut(s) 201, 1037
AsuHPI GGTGA 3 cut(s) 410, 1003, 1181
AsuII TTCGAA 1 cut(s) 108
AvaI CYCGRG 2 cut(s) 725, 779
AvaII GGWCC 3 cut(s) 425, 848, 1192
BanII GRGCYC 1 cut(s) 780
BbrPI CACGTG 2 cut(s) 749, 1241
BccI CCATC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 1244
BcnI CCSGG 2 cut(s) 201, 1037
BcoDI GTCTC 3 cut(s) 55, 812, 1200
BfaI CTAG 1 cut(s) 1131
BfuAI ACCTGC 1 cut(s) 979
BglI GCCNNNNNGGC 1 cut(s) 74
BglII AGATCT 2 cut(s) 87, 940
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 201, 1037
Bme18I GGWCC 3 cut(s) 425, 848, 1192
BmeT110I CYCGRG 2 cut(s) 725, 779
BmgT120I GGNCC 4 cut(s) 198, 425, 848, 1192
BmiI GGNNCC 3 cut(s) 172, 816, 1193
BmrFI CCNGG 2 cut(s) 201, 1037
BmrI ACTGGG 3 cut(s) 634, 691, 796
BmsI GCATC 2 cut(s) 229, 1062
BmuI ACTGGG 3 cut(s) 634, 691, 796
Bpu14I TTCGAA 1 cut(s) 108
BpuMI CCSGG 2 cut(s) 201, 1037
Bsa29I ATCGAT 1 cut(s) 702
BsaAI YACGTR 2 cut(s) 749, 1241
BsaBI GATNNNNATC 1 cut(s) 939
BsaI GGTCTC 1 cut(s) 812
BsaJI CCNNGG 5 cut(s) 641, 726, 780, 851, 905
BsaWI WCCGGW 2 cut(s) 291, 1197
BsaXI ACNNNNNCTCC 2 cut(s) 1204, 1234
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 786, 1080, 1081
Bse118I RCCGGY 2 cut(s) 188, 1197
Bse1I ACTGG 4 cut(s) 307, 629, 686, 791
Bse3DI GCAATG 1 cut(s) 518
Bse8I GATNNNNATC 1 cut(s) 939
BseCI ATCGAT 1 cut(s) 702
BseDI CCNNGG 5 cut(s) 641, 726, 780, 851, 905
BseGI GGATG 5 cut(s) 122, 630, 691, 1066, 1258
BseJI GATNNNNATC 1 cut(s) 939
BseLI CCNNNNNNNGG 4 cut(s) 195, 786, 1080, 1081
BseMI GCAATG 1 cut(s) 518
BseMII CTCAG 4 cut(s) 37, 264, 327, 1080
BseNI ACTGG 4 cut(s) 307, 629, 686, 791
BseRI GAGGAG 2 cut(s) 113, 1228
BseX3I CGGCCG 1 cut(s) 1229
Bsh1285I CGRYCG 1 cut(s) 1232
BshFI GGCC 2 cut(s) 199, 1231
BshTI ACCGGT 1 cut(s) 1197
BshVI ATCGAT 1 cut(s) 702
BsiEI CGRYCG 1 cut(s) 1232
BsiHKCI CYCGRG 2 cut(s) 725, 779
BsiSI CCGG 5 cut(s) 189, 201, 292, 1037, 1198
BslFI GGGAC 4 cut(s) 495, 641, 803, 1205
BslI CCNNNNNNNGG 4 cut(s) 195, 786, 1080, 1081
BsmAI GTCTC 3 cut(s) 55, 812, 1200
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 4 cut(s) 495, 641, 803, 1205
BsmI GAATGC 1 cut(s) 667
BsnI GGCC 2 cut(s) 199, 1231
Bso31I GGTCTC 1 cut(s) 812
BsoBI CYCGRG 2 cut(s) 725, 779
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 780
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 8 cut(s) 87, 205, 648, 760, 825, 934, 940, 1023
Bsp19I CCATGG 1 cut(s) 905
BspACI CCGC 3 cut(s) 438, 1106, 1180
BspANI GGCC 2 cut(s) 199, 1231
BspCNI CTCAG 4 cut(s) 36, 265, 326, 1081
BspDI ATCGAT 1 cut(s) 702
BspLI GGNNCC 3 cut(s) 172, 816, 1193
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 3 cut(s) 200, 820, 929
BspT104I TTCGAA 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 812
BsrDI GCAATG 1 cut(s) 518
BsrFI RCCGGY 2 cut(s) 188, 1197
BsrGI TGTACA 1 cut(s) 615
BsrI ACTGG 4 cut(s) 307, 629, 686, 791
BssAI RCCGGY 2 cut(s) 188, 1197
BssECI CCNNGG 5 cut(s) 641, 726, 780, 851, 905
BssMI GATC 8 cut(s) 87, 205, 648, 760, 825, 934, 940, 1023
BssT1I CCWWGG 3 cut(s) 641, 851, 905
Bst4CI ACNGT 1 cut(s) 413
BstAUI TGTACA 1 cut(s) 615
BstBAI YACGTR 2 cut(s) 749, 1241
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 973, 1000, 1178
BstDEI CTNAG 5 cut(s) 23, 94, 273, 313, 1089
BstDSI CCRYGG 1 cut(s) 905
BstF5I GGATG 5 cut(s) 122, 630, 691, 1066, 1258
BstKTI GATC 8 cut(s) 90, 208, 651, 763, 828, 937, 943, 1026
BstMAI GTCTC 3 cut(s) 55, 812, 1200
BstMBI GATC 8 cut(s) 87, 205, 648, 760, 825, 934, 940, 1023
BstMCI CGRYCG 1 cut(s) 1232
BstMWI GCNNNNNNNGC 3 cut(s) 74, 260, 1154
BstSCI CCNGG 2 cut(s) 199, 1035
BstX2I RGATCY 3 cut(s) 87, 825, 940
BstXI CCANNNNNNTGG 2 cut(s) 681, 1202
BstYI RGATCY 3 cut(s) 87, 825, 940
BstZI CGGCCG 1 cut(s) 1229
Bsu15I ATCGAT 1 cut(s) 702
BsuRI GGCC 2 cut(s) 199, 1231
BsuTUI ATCGAT 1 cut(s) 702
BtgI CCRYGG 1 cut(s) 905
BtgZI GCGATG 1 cut(s) 1044
BtsCI GGATG 5 cut(s) 122, 630, 691, 1066, 1258
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 979
Cac8I GCNNGC 3 cut(s) 973, 1000, 1178
Cfr10I RCCGGY 2 cut(s) 188, 1197
Cfr13I GGNCC 4 cut(s) 198, 425, 848, 1192
ClaI ATCGAT 1 cut(s) 702
CseI GACGC 2 cut(s) 545, 572
Csp6I GTAC 5 cut(s) 56, 310, 616, 697, 841
CspAI ACCGGT 1 cut(s) 1197
CviAII CATG 3 cut(s) 461, 906, 1262
CviQI GTAC 5 cut(s) 56, 310, 616, 697, 841
DdeI CTNAG 5 cut(s) 23, 94, 273, 313, 1089
DpnI GATC 8 cut(s) 89, 207, 650, 762, 827, 936, 942, 1025
DpnII GATC 8 cut(s) 87, 205, 648, 760, 825, 934, 940, 1023
EaeI YGGCCR 1 cut(s) 1229
EagI CGGCCG 1 cut(s) 1229
EciI GGCGGA 1 cut(s) 1195
EclXI CGGCCG 1 cut(s) 1229
Eco130I CCWWGG 3 cut(s) 641, 851, 905
Eco24I GRGCYC 1 cut(s) 780
Eco31I GGTCTC 1 cut(s) 812
Eco47I GGWCC 3 cut(s) 425, 848, 1192
Eco52I CGGCCG 1 cut(s) 1229
Eco57I CTGAAG 1 cut(s) 974
Eco72I CACGTG 2 cut(s) 749, 1241
Eco88I CYCGRG 2 cut(s) 725, 779
EcoO109I RGGNCCY 1 cut(s) 848
EcoT14I CCWWGG 3 cut(s) 641, 851, 905
EcoT38I GRGCYC 1 cut(s) 780
ErhI CCWWGG 3 cut(s) 641, 851, 905
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 3 cut(s) 464, 909, 1265
FaqI GGGAC 4 cut(s) 495, 641, 803, 1205
FatI CATG 3 cut(s) 460, 905, 1261
FauNDI CATATG 1 cut(s) 1042
FokI GGATG 5 cut(s) 129, 617, 698, 1073, 1265
FriOI GRGCYC 1 cut(s) 780
FspBI CTAG 1 cut(s) 1131
HaeIII GGCC 2 cut(s) 199, 1231
HapII CCGG 5 cut(s) 189, 201, 292, 1037, 1198
HgaI GACGC 2 cut(s) 545, 572
Hin1II CATG 3 cut(s) 464, 909, 1265
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 6 cut(s) 268, 295, 737, 867, 1085, 1234
HpaI GTTAAC 1 cut(s) 379
HpaII CCGG 5 cut(s) 189, 201, 292, 1037, 1198
HphI GGTGA 3 cut(s) 410, 1003, 1181
Hpy166II GTNNAC 3 cut(s) 379, 618, 1172
Hpy188I TCNGA 6 cut(s) 85, 142, 228, 954, 1090, 1152
Hpy188III TCNNGA 9 cut(s) 209, 272, 319, 560, 658, 758, 871, 920, 938
Hpy8I GTNNAC 3 cut(s) 379, 618, 1172
HpyAV CCTTC 6 cut(s) 104, 152, 644, 988, 1087, 1160
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 3 cut(s) 748, 948, 1240
HpyCH4V TGCA 5 cut(s) 263, 511, 665, 971, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 260, 1154
HpyF3I CTNAG 5 cut(s) 23, 94, 273, 313, 1089
HpySE526I ACGT 3 cut(s) 748, 948, 1240
Hsp92II CATG 3 cut(s) 464, 909, 1265
KspAI GTTAAC 1 cut(s) 379
Kzo9I GATC 8 cut(s) 87, 205, 648, 760, 825, 934, 940, 1023
LmnI GCTCC 2 cut(s) 100, 366
LweI GCATC 2 cut(s) 229, 1062
MaeI CTAG 1 cut(s) 1131
MaeII ACGT 3 cut(s) 748, 948, 1240
MaeIII GTNAC 1 cut(s) 1220
MalI GATC 8 cut(s) 89, 207, 650, 762, 827, 936, 942, 1025
MboI GATC 8 cut(s) 87, 205, 648, 760, 825, 934, 940, 1023
MflI RGATCY 3 cut(s) 87, 825, 940
MhlI GDGCHC 1 cut(s) 780
MluCI AATT 6 cut(s) 487, 527, 602, 753, 832, 923
MlyI GAGTC 2 cut(s) 289, 1094
MseI TTAA 4 cut(s) 177, 357, 378, 530
MslI CAYNNNNRTG 1 cut(s) 1200
MspI CCGG 5 cut(s) 189, 201, 292, 1037, 1198
MspR9I CCNGG 2 cut(s) 201, 1037
Mva1269I GAATGC 1 cut(s) 667
MwoI GCNNNNNNNGC 3 cut(s) 74, 260, 1154
NciI CCSGG 2 cut(s) 201, 1037
NcoI CCATGG 1 cut(s) 905
NdeI CATATG 1 cut(s) 1042
NdeII GATC 8 cut(s) 87, 205, 648, 760, 825, 934, 940, 1023
NlaIII CATG 3 cut(s) 464, 909, 1265
NlaIV GGNNCC 3 cut(s) 172, 816, 1193
NspV TTCGAA 1 cut(s) 108
PaqCI CACCTGC 1 cut(s) 979
PctI GAATGC 1 cut(s) 667
PfeI GAWTC 4 cut(s) 268, 737, 867, 1234
PinAI ACCGGT 1 cut(s) 1197
PleI GAGTC 2 cut(s) 289, 1093
PmaCI CACGTG 2 cut(s) 749, 1241
PmlI CACGTG 2 cut(s) 749, 1241
PpsI GAGTC 2 cut(s) 289, 1093
Ppu21I YACGTR 2 cut(s) 749, 1241
PpuMI RGGWCCY 1 cut(s) 848
PsiI TTATAA 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 848
PspCI CACGTG 2 cut(s) 749, 1241
PspN4I GGNNCC 3 cut(s) 172, 816, 1193
PspPI GGNCC 4 cut(s) 198, 425, 848, 1192
PspPPI RGGWCCY 1 cut(s) 848
PsrI GAACNNNNNNTAC 2 cut(s) 866, 898
PsuI RGATCY 3 cut(s) 87, 825, 940
RsaI GTAC 5 cut(s) 57, 311, 617, 698, 842
RsaNI GTAC 5 cut(s) 56, 310, 616, 697, 841
RseI CAYNNNNRTG 1 cut(s) 1200
SaqAI TTAA 4 cut(s) 177, 357, 378, 530
Sau3AI GATC 8 cut(s) 87, 205, 648, 760, 825, 934, 940, 1023
Sau96I GGNCC 4 cut(s) 198, 425, 848, 1192
ScaI AGTACT 1 cut(s) 311
SchI GAGTC 2 cut(s) 289, 1094
ScrFI CCNGG 2 cut(s) 201, 1037
SduI GDGCHC 1 cut(s) 780
SfaNI GCATC 2 cut(s) 229, 1062
SfuI TTCGAA 1 cut(s) 108
SinI GGWCC 3 cut(s) 425, 848, 1192
SmiMI CAYNNNNRTG 1 cut(s) 1200
Sse9I AATT 6 cut(s) 487, 527, 602, 753, 832, 923
SsiI CCGC 3 cut(s) 438, 1106, 1180
SspMI CTAG 1 cut(s) 1131
StyD4I CCNGG 2 cut(s) 199, 1035
StyI CCWWGG 3 cut(s) 641, 851, 905
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 3 cut(s) 751, 951, 1243
TaqI TCGA 2 cut(s) 108, 702
TasI AATT 6 cut(s) 487, 527, 602, 753, 832, 923
TatI WGTACW 4 cut(s) 55, 309, 615, 696
TfiI GAWTC 4 cut(s) 268, 737, 867, 1234
Tru1I TTAA 4 cut(s) 177, 357, 378, 530
Tru9I TTAA 4 cut(s) 177, 357, 378, 530
TscAI CASTG 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 449, 462
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 3 cut(s) 425, 848, 1192
XapI RAATTY 4 cut(s) 602, 753, 832, 923
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
XspI CTAG 1 cut(s) 1131
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.