Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002902

Physical Location & Seq

Genomic Coordinates Reverse (-)

24454647 .. 24457729

Gene Structure 3083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g24070.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGAAGCGGCAAAAGCATGATGACCTGCTTCTGCTACTATTATCACTCTCCTTGCTCTCCTTTTGCTTTCGTTCTTCGCTTTCGGAGATCATTTTCGAGGAGCGCTTCGACGACGACGGATGGCGAAGCCGTTGGGTGAAATCCGACTGGAAAAGCAGTGAAGGTAAAGCAGGTTCCTTTAAACACACAGCCGGAAGGTGGGCCGGTGACCACGATGATAAAGGAATTCAGACATCTAATGATGCCAAGCATTTTGCCATATCTGCAAAGATACCGGAGTTCAGCAATCGGAACAGGACGTTGGTCCTCCAATACTCGATCAAGTTTGAGCAGGAAATTGAATGTGGAGGCGGTTACATAAAGCTTATGTCTGGATTTGTTAATCAGAAGAAATTCGGCGGGGACACTCCGTACAGTTTAATGTTTGGCCCCGATATATGTGGCACGGACACAAAGAAGCTCCATGTCATACTCTCCTACCAAGGCCAGAATTACCCCATCAAGAAGGCCTTAGAGTGTGAAACTGACAAGTTGACTCATTTCTACACGTTCATTCTTCGACCAGATGCAACTTATAGTGTCCTAATAGACAACCGAGAAAAGGATTCTGGAAGCATGTACACAGATTGGGATATTCTTCCTCCAAGAAAGATAAAAGATGTTACTGCAAAGAAGCCAGCAGACTGGGATCTTAGAGAATACATTGATGATCCTAATCACATCAAACCTGAGGGATATGATTCAATTCCGAGAGAAATTCCAGATCCAAAAGCAAAAGAGCCCGAAGACTGGGATGATGAAGAGAACGGTCTGTGGAAAGCTCCAAAGATACCAAATCCAGCTTACAAGGGACCATGGAGACCCAAGAAAATCAAGAACCCTAATTACAAAGGGAAATGGAAGATTCCTTGGATTGATAATCCAGATGATCGATCGAACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009812 GO:0009987 GO:0010204 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0033554 GO:0034050 GO:0042175 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0080134 GO:0098542 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

316

Amino Acids

36.45

Weight (kDa)

7.05

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08450 AT1G08450 AT1G08450
fragaria_vesca	FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_6g00230 FvH4_6g00230 FvH4_6g00230
malus_domestica	MD04G1045300.v1.1 MD04G1247000.v1.1 MD12G1263200.v1.1
prunus_persica	Prupe.1G198500_v2.0.a1 Prupe.6G363200_v2.0.a1
pyrus_communis	pycom04g21770 pycom12g24070
rosa_chinensis	RchiOBHm_Chr2g0118841 RchiOBHm_Chr3g0447601
rosa_laevigata	RLG00000018425 RLG00000025985
rosa_multiflora	Rmu_sc0001814.1_g000009 Rmu_sc0003550.1_g000005
rosa_roxburghii	Rroxscaffold_2G00125130 Rroxscaffold_6G00425810
rosa_rugosa	Rorug02G0219200 Rorug02G0603400
rosa_samantha	Rh2AG276300 Rh2BG288100 Rh2DG283200 Rh2DG302300 Rh3AG003600 Rh3BG003100 Rh3CG003400 Rh3DG003400
rosa_wichuraiana	Rw2G021990 Rw3G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	36, 164
AciI	CCGC	3 cut(s)	10, 354, 402
AclWI	GGATC	3 cut(s)	699, 707, 761
AcsI	RAATTY	3 cut(s)	228, 395, 759
AfaI	GTAC	2 cut(s)	416, 623
AfeI	AGCGCT	1 cut(s)	107
AfiI	CCNNNNNNNGG	3 cut(s)	201, 604, 792
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	2 cut(s)	344, 747
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	4 cut(s)	367, 463, 824, 845
AluI	AGCT	4 cut(s)	367, 463, 824, 845
Alw26I	GTCTC	1 cut(s)	856
AlwI	GGATC	3 cut(s)	699, 707, 761
Aor51HI	AGCGCT	1 cut(s)	107
AoxI	GGCC	4 cut(s)	204, 430, 487, 510
ApoI	RAATTY	3 cut(s)	228, 395, 759
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	4 cut(s)	204, 307, 431, 854
AsuHPI	GGTGA	2 cut(s)	151, 221
AvaII	GGWCC	2 cut(s)	307, 854
AxyI	CCTNAGG	1 cut(s)	732
BaeI	ACNNNNGTAYC	2 cut(s)	266, 299
BanII	GRGCYC	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	795
BccI	CCATC	2 cut(s)	117, 509
BceAI	ACGGC	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	856
BfoI	RGCGCY	1 cut(s)	109
BfuAI	ACCTGC	2 cut(s)	36, 164
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme18I	GGWCC	2 cut(s)	307, 854
BmgT120I	GGNCC	4 cut(s)	204, 307, 431, 854
BmiI	GGNNCC	3 cut(s)	178, 433, 855
BmrI	ACTGGG	2 cut(s)	697, 802
BmsI	GCATC	2 cut(s)	235, 559
BmuI	ACTGGG	2 cut(s)	697, 802
BoxI	GACNNNNGTC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	795
Bsa29I	ATCGAT	1 cut(s)	934
BsaBI	GATNNNNATC	1 cut(s)	717
BsaI	GGTCTC	1 cut(s)	856
BsaJI	CCNNGG	3 cut(s)	484, 857, 911
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 604, 792
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	3 cut(s)	155, 692, 797
Bse21I	CCTNAGG	1 cut(s)	732
Bse8I	GATNNNNATC	1 cut(s)	717
BseCI	ATCGAT	1 cut(s)	934
BseDI	CCNNGG	3 cut(s)	484, 857, 911
BseGI	GGATG	2 cut(s)	128, 802
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	3 cut(s)	201, 604, 792
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	3 cut(s)	155, 692, 797
BseRI	GAGGAG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	938
BshFI	GGCC	4 cut(s)	206, 432, 489, 512
BshVI	ATCGAT	1 cut(s)	934
BsiEI	CGRYCG	1 cut(s)	938
BsiSI	CCGG	3 cut(s)	195, 207, 278
BslFI	GGGAC	2 cut(s)	419, 867
BslI	CCNNNNNNNGG	3 cut(s)	201, 604, 792
BsmAI	GTCTC	1 cut(s)	856
BsmFI	GGGAC	2 cut(s)	419, 867
BsnI	GGCC	4 cut(s)	206, 432, 489, 512
Bso31I	GGTCTC	1 cut(s)	856
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp1407I	TGTACA	1 cut(s)	621
Bsp143I	GATC	7 cut(s)	90, 321, 691, 712, 766, 931, 935
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	3 cut(s)	10, 354, 402
BspANI	GGCC	4 cut(s)	206, 432, 489, 512
BspCNI	CTCAG	1 cut(s)	724
BspDI	ATCGAT	1 cut(s)	934
BspLI	GGNNCC	3 cut(s)	178, 433, 855
BspMI	ACCTGC	2 cut(s)	36, 164
BspPI	GGATC	3 cut(s)	699, 707, 761
BspTNI	GGTCTC	1 cut(s)	856
BsrFI	RCCGGY	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	621
BsrI	ACTGG	3 cut(s)	155, 692, 797
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	3 cut(s)	484, 857, 911
BssMI	GATC	7 cut(s)	90, 321, 691, 712, 766, 931, 935
BssT1I	CCWWGG	3 cut(s)	484, 857, 911
Bst4CI	ACNGT	2 cut(s)	419, 812
Bst6I	CTCTTC	1 cut(s)	798
BstAUI	TGTACA	1 cut(s)	621
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	3 cut(s)	514, 695, 732
BstDSI	CCRYGG	1 cut(s)	857
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	128, 802
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	7 cut(s)	93, 324, 694, 715, 769, 934, 938
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	7 cut(s)	90, 321, 691, 712, 766, 931, 935
BstMCI	CGRYCG	1 cut(s)	938
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 266
BstNSI	RCATGY	1 cut(s)	622
BstPAI	GACNNNNGTC	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	2 cut(s)	691, 766
BstXI	CCANNNNNNTGG	1 cut(s)	687
BstYI	RGATCY	2 cut(s)	691, 766
Bsu15I	ATCGAT	1 cut(s)	934
Bsu36I	CCTNAGG	1 cut(s)	732
BsuRI	GGCC	4 cut(s)	206, 432, 489, 512
BsuTUI	ATCGAT	1 cut(s)	934
BtgI	CCRYGG	1 cut(s)	857
BtsCI	GGATG	2 cut(s)	128, 802
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
BveI	ACCTGC	2 cut(s)	36, 164
Cac8I	GCNNGC	1 cut(s)	681
CfoI	GCGC	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	4 cut(s)	204, 307, 431, 854
ClaI	ATCGAT	1 cut(s)	934
Csp6I	GTAC	2 cut(s)	415, 622
CviAII	CATG	4 cut(s)	20, 467, 619, 858
CviQI	GTAC	2 cut(s)	415, 622
DdeI	CTNAG	3 cut(s)	514, 695, 732
DpnI	GATC	7 cut(s)	92, 323, 693, 714, 768, 933, 937
DpnII	GATC	7 cut(s)	90, 321, 691, 712, 766, 931, 935
DraI	TTTAAA	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Eco130I	CCWWGG	3 cut(s)	484, 857, 911
Eco147I	AGGCCT	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	856
Eco47I	GGWCC	2 cut(s)	307, 854
Eco47III	AGCGCT	1 cut(s)	107
Eco81I	CCTNAGG	1 cut(s)	732
Eco91I	GGTNACC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	228
EcoT14I	CCWWGG	3 cut(s)	484, 857, 911
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	3 cut(s)	484, 857, 911
FaeI	CATG	4 cut(s)	23, 470, 622, 861
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	2 cut(s)	419, 867
FatI	CATG	4 cut(s)	19, 466, 618, 857
FauI	CCCGC	1 cut(s)	395
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	2 cut(s)	135, 809
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	1 cut(s)	11
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	11
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	4 cut(s)	206, 432, 489, 512
HapII	CCGG	3 cut(s)	195, 207, 278
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	23, 470, 622, 861
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	4 cut(s)	538, 608, 743, 907
HpaII	CCGG	3 cut(s)	195, 207, 278
HphI	GGTGA	2 cut(s)	151, 221
Hpy166II	GTNNAC	2 cut(s)	537, 624
Hpy188I	TCNGA	7 cut(s)	88, 148, 234, 294, 390, 753, 947
Hpy188III	TCNNGA	6 cut(s)	375, 505, 612, 764, 877, 926
Hpy8I	GTNNAC	2 cut(s)	537, 624
Hpy99I	CGWCG	3 cut(s)	116, 119, 122
HpyAV	CCTTC	3 cut(s)	158, 192, 502
HpyCH4III	ACNGT	2 cut(s)	419, 812
HpyCH4IV	ACGT	2 cut(s)	302, 551
HpyCH4V	TGCA	3 cut(s)	269, 572, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 266
HpyF3I	CTNAG	3 cut(s)	514, 695, 732
HpySE526I	ACGT	2 cut(s)	302, 551
Hsp92II	CATG	4 cut(s)	23, 470, 622, 861
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	7 cut(s)	90, 321, 691, 712, 766, 931, 935
LmnI	GCTCC	3 cut(s)	103, 468, 829
LweI	GCATC	2 cut(s)	235, 559
MaeII	ACGT	2 cut(s)	302, 551
MaeIII	GTNAC	3 cut(s)	209, 356, 664
MalI	GATC	7 cut(s)	92, 323, 693, 714, 768, 933, 937
MboI	GATC	7 cut(s)	90, 321, 691, 712, 766, 931, 935
MboII	GAAGA	7 cut(s)	69, 403, 551, 632, 800, 815, 916
MflI	RGATCY	2 cut(s)	691, 766
MhlI	GDGCHC	1 cut(s)	786
MluCI	AATT	7 cut(s)	228, 339, 395, 493, 747, 759, 886
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	5 cut(s)	94, 320, 344, 654, 727
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	3 cut(s)	183, 384, 422
MspI	CCGG	3 cut(s)	195, 207, 278
MwoI	GCNNNNNNNGC	2 cut(s)	16, 266
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	7 cut(s)	90, 321, 691, 712, 766, 931, 935
NlaIII	CATG	4 cut(s)	23, 470, 622, 861
NlaIV	GGNNCC	3 cut(s)	178, 433, 855
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	622
PceI	AGGCCT	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	3 cut(s)	608, 743, 907
PkrI	GCNGC	1 cut(s)	12
Ple19I	CGATCG	1 cut(s)	938
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PshAI	GACNNNNGTC	1 cut(s)	305
PspEI	GGTNACC	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	178, 433, 855
PspPI	GGNCC	4 cut(s)	204, 307, 431, 854
PsrI	GAACNNNNNNTAC	4 cut(s)	160, 192, 872, 904
PsuI	RGATCY	2 cut(s)	691, 766
PvuI	CGATCG	1 cut(s)	938
RsaI	GTAC	2 cut(s)	416, 623
RsaNI	GTAC	2 cut(s)	415, 622
SaqAI	TTAA	3 cut(s)	183, 384, 422
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	7 cut(s)	90, 321, 691, 712, 766, 931, 935
Sau96I	GGNCC	4 cut(s)	204, 307, 431, 854
SchI	GAGTC	1 cut(s)	532
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	2 cut(s)	235, 559
SinI	GGWCC	2 cut(s)	307, 854
Sse9I	AATT	7 cut(s)	228, 339, 395, 493, 747, 759, 886
SseBI	AGGCCT	1 cut(s)	512
SsiI	CCGC	3 cut(s)	10, 354, 402
StuI	AGGCCT	1 cut(s)	512
StyI	CCWWGG	3 cut(s)	484, 857, 911
TaaI	ACNGT	2 cut(s)	419, 812
TaiI	ACGT	2 cut(s)	305, 554
TaqI	TCGA	6 cut(s)	99, 111, 320, 562, 934, 938
TasI	AATT	7 cut(s)	228, 339, 395, 493, 747, 759, 886
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	3 cut(s)	608, 743, 907
Tru1I	TTAA	3 cut(s)	183, 384, 422
Tru9I	TTAA	3 cut(s)	183, 384, 422
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	544, 816
TspGWI	ACGGA	3 cut(s)	135, 402, 464
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	2 cut(s)	307, 854
XapI	RAATTY	3 cut(s)	228, 395, 759
XceI	RCATGY	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.