Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002902

Physical Location & Seq

Genomic Coordinates Forward (+)

15319159 .. 15325995

Gene Structure 6837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAAGCTTCTCGAACCTCTTCTTCTTCTGCTGCTGCTGCTGCTTCCGCTTATATCCCTCCACTTCCGCCTCGCCGTCGCCGAAGTCTTCTTCGAAGAGCGATTCGAAGAAGGATGGAAGAGCCGGTGGGTTTTGTCAGACTGGAAGAGGGCCGAAGGGAAAGCGGGGACGTTTAAGCACACTGCAGGGAAATGGTCTGGAGATCCTGATGATAAAGGCATTCAGACATATAATGATGCCAAGCATTATGCCATATCTGCAAAAATTCCTGAGTTCAGCAACAAAAACAAAACTCTAGTGATCCAGTATTCGATTAAATTTGAGCAAGACATTGAATGTGGTGGTGGCTACATCAAGCTTCTATCTGGCTATGTGAATCAGAAGAAGTTCGGCGGTGATACCCCATACAGTTTCATGTTTGGACCAGATCTATGTGGCTCACAGACCAAAAAACTCCATCTTATACTTTCTTACCAGGGGCAGAATTATCCCATAAAAAAGGATCTTCAATGTGAAACAGACAAGTTAACTCATTTCTATACATTTATTCTTAGACCTGATGCAACTTACAGTGTCCTTGTTGATAATCGAGAAAGAGATTCTGGAAGCATGTATACTGATTGGGATATACTTCCTCCACGGAAAATCAAGGATGTCAATGCAAGAAAGCCATCAGACTGGGATGACAGAGATTACATTGAGGACGTCAAAGCTGCCAAACCAGAGGGATATGATTCAGTTCCATCAGAAATTCCTGATCCAAAGGCCAAAGAGCCAGAGGACTGGGATGAGGAAGAGAACGGGTTATGGAGACCACCAAAGATCCCAAATCCAGCTTACAAGGGGCCATGGAAGCGTAAGAAAATCAAGAACCCCAACTATAAGGGGAAGTGGAAGACTCCGTGGATTGATAACCCAGAGTTTGAGGATGATCCTGACCTTTATGTGCTGAAGCCAATAAAATATGTGGGCATTGAAGTTTGGCAGGTAAAAGCTGGTTCAGTTTTCGACAACATTTTGATTTGTGATGATCCACAGTATGCAAAACAAGTGGTAGAAGAGATATTTTCCAATAGAGAGGCTGAAAAAGAAGCTTTTGAGGAAGCAGAGAAGGAGAGAAGAGCACGAGAAGAAGAGGATGCTAGAAGAGCAAGAGAGGAAGGTGAAAGGAAGAAGAGGGAGAGGGATCGTAAGTATGGAGATAGGAGGCGCCGTAGAAAGCATGATCCACGTGATTATTTGGATGATTACCATGATGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009812 GO:0009987 GO:0010204 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0033554 GO:0034050 GO:0042175 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0080134 GO:0098542 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

422

Amino Acids

49.54

Weight (kDa)

5.98

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calreticulin	PF00262	31 - 267	1.4e-57	Calreticulin family
Calreticulin	PF00262	268 - 341	1.2e-19	Calreticulin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08450 AT1G08450 AT1G08450
fragaria_vesca	FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_6g00230 FvH4_6g00230 FvH4_6g00230
malus_domestica	MD04G1045300.v1.1 MD04G1247000.v1.1 MD12G1263200.v1.1
prunus_persica	Prupe.1G198500_v2.0.a1 Prupe.6G363200_v2.0.a1
pyrus_communis	pycom04g21770 pycom12g24070
rosa_chinensis	RchiOBHm_Chr2g0118841 RchiOBHm_Chr3g0447601
rosa_laevigata	RLG00000018425 RLG00000025985
rosa_multiflora	Rmu_sc0001814.1_g000009 Rmu_sc0003550.1_g000005
rosa_roxburghii	Rroxscaffold_2G00125130 Rroxscaffold_6G00425810
rosa_rugosa	Rorug02G0219200 Rorug02G0603400
rosa_samantha	Rh2AG276300 Rh2BG288100 Rh2DG283200 Rh2DG302300 Rh3AG003600 Rh3BG003100 Rh3CG003400 Rh3DG003400
rosa_wichuraiana	Rw2G021990 Rw3G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	708
Acc36I	ACCTGC	1 cut(s)	976
AccB1I	GGYRCC	1 cut(s)	1209
AccI	GTMKAC	1 cut(s)	614
AciI	CCGC	4 cut(s)	47, 67, 164, 393
AclWI	GGATC	9 cut(s)	197, 295, 510, 752, 817, 926, 1025, 1194, 1220
AcsI	RAATTY	3 cut(s)	264, 317, 750
AcuI	CTGAAG	1 cut(s)	971
AcvI	CACGTG	1 cut(s)	1232
AcyI	GRCGYC	2 cut(s)	705, 1210
AgsI	TTSAA	3 cut(s)	335, 509, 977
AjnI	CCWGG	1 cut(s)	474
AluBI	AGCT	6 cut(s)	7, 358, 713, 836, 995, 1094
AluI	AGCT	6 cut(s)	7, 358, 713, 836, 995, 1094
Alw21I	GWGCWC	1 cut(s)	1126
Alw26I	GTCTC	1 cut(s)	805
AlwI	GGATC	9 cut(s)	197, 295, 510, 752, 817, 926, 1025, 1194, 1220
AoxI	GGCC	3 cut(s)	150, 765, 845
ApeKI	GCWGC	5 cut(s)	31, 34, 37, 40, 713
ApoI	RAATTY	3 cut(s)	264, 317, 750
Asp700I	GAANNNNTTC	2 cut(s)	18, 386
AspLEI	GCGC	1 cut(s)	1212
AspS9I	GGNCC	3 cut(s)	150, 422, 845
AsuHPI	GGTGA	2 cut(s)	407, 1175
AsuII	TTCGAA	2 cut(s)	93, 105
AvaII	GGWCC	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	1209
BarI	GAAGNNNNNNTAC	2 cut(s)	598, 630
BauI	CACGAG	1 cut(s)	1125
BbrPI	CACGTG	1 cut(s)	1232
BbsI	GAAGAC	2 cut(s)	79, 902
Bbv12I	GWGCWC	1 cut(s)	1126
BbvI	GCAGC	5 cut(s)	18, 21, 24, 27, 700
BccI	CCATC	4 cut(s)	108, 465, 679, 751
BceAI	ACGGC	2 cut(s)	59, 1197
BciT130I	CCWGG	1 cut(s)	476
BcoDI	GTCTC	1 cut(s)	805
BfaI	CTAG	2 cut(s)	296, 1143
BfmI	CTRYAG	1 cut(s)	183
BfoI	RGCGCY	1 cut(s)	1213
BfuAI	ACCTGC	1 cut(s)	976
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	5 cut(s)	32, 35, 38, 41, 714
BlsI	GCNGC	5 cut(s)	33, 36, 39, 42, 715
Bme1390I	CCNGG	1 cut(s)	476
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	3 cut(s)	150, 422, 845
BmiI	GGNNCC	2 cut(s)	846, 1211
BmrFI	CCNGG	1 cut(s)	476
BmrI	ACTGGG	2 cut(s)	688, 793
BmsI	GCATC	3 cut(s)	226, 550, 1129
BmuI	ACTGGG	2 cut(s)	688, 793
BpiI	GAAGAC	2 cut(s)	79, 902
BpmI	CTGGAG	1 cut(s)	219
Bpu14I	TTCGAA	2 cut(s)	93, 105
BsaAI	YACGTR	1 cut(s)	1232
BsaHI	GRCGYC	2 cut(s)	705, 1210
BsaI	GGTCTC	1 cut(s)	805
BsaJI	CCNNGG	4 cut(s)	475, 638, 848, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	1198, 1228
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	4 cut(s)	146, 304, 683, 788
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	4 cut(s)	475, 638, 848, 902
BseGI	GGATG	7 cut(s)	119, 658, 688, 793, 934, 1144, 1249
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	4 cut(s)	146, 304, 683, 788
BseXI	GCAGC	5 cut(s)	18, 21, 24, 27, 700
BshFI	GGCC	3 cut(s)	152, 767, 847
BshNI	GGYRCC	1 cut(s)	1209
BsiHKAI	GWGCWC	1 cut(s)	1126
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	805
BsmFI	GGGAC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	3 cut(s)	152, 767, 847
Bso31I	GGTCTC	1 cut(s)	805
Bsp119I	TTCGAA	2 cut(s)	93, 105
Bsp1286I	GDGCHC	1 cut(s)	1126
Bsp19I	CCATGG	1 cut(s)	848
BspACI	CCGC	4 cut(s)	47, 67, 164, 393
BspANI	GGCC	3 cut(s)	152, 767, 847
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	846, 1211
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	976
BspPI	GGATC	9 cut(s)	197, 295, 510, 752, 817, 926, 1025, 1194, 1220
BspQI	GCTCTTC	4 cut(s)	90, 113, 1114, 1141
BspT104I	TTCGAA	2 cut(s)	93, 105
BspT107I	GGYRCC	1 cut(s)	1209
BspTNI	GGTCTC	1 cut(s)	805
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	4 cut(s)	146, 304, 683, 788
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	475, 638, 848, 902
BssNAI	GTATAC	1 cut(s)	615
BssNI	GRCGYC	2 cut(s)	705, 1210
BssSI	CACGAG	1 cut(s)	1125
BssT1I	CCWWGG	1 cut(s)	848
Bst1107I	GTATAC	1 cut(s)	615
Bst2BI	CACGAG	1 cut(s)	1125
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	3 cut(s)	410, 572, 1038
BstACI	GRCGYC	2 cut(s)	705, 1210
BstBAI	YACGTR	1 cut(s)	1232
BstBI	TTCGAA	2 cut(s)	93, 105
BstDEI	CTNAG	2 cut(s)	270, 551
BstDSI	CCRYGG	3 cut(s)	638, 848, 902
BstF5I	GGATG	7 cut(s)	119, 658, 688, 793, 934, 1144, 1249
BstH2I	RGCGCY	1 cut(s)	1213
BstHHI	GCGC	1 cut(s)	1212
BstMAI	GTCTC	1 cut(s)	805
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 40, 46, 257, 853, 1148
BstNI	CCWGG	1 cut(s)	476
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	5 cut(s)	18, 21, 24, 27, 700
BstV2I	GAAGAC	2 cut(s)	79, 902
BstX2I	RGATCY	4 cut(s)	202, 427, 502, 822
BstXI	CCANNNNNNTGG	2 cut(s)	678, 783
BstYI	RGATCY	4 cut(s)	202, 427, 502, 822
BstZ17I	GTATAC	1 cut(s)	615
BsuRI	GGCC	3 cut(s)	152, 767, 847
BtgI	CCRYGG	3 cut(s)	638, 848, 902
BtsCI	GGATG	7 cut(s)	119, 658, 688, 793, 934, 1144, 1249
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	180, 577
BveI	ACCTGC	1 cut(s)	976
CfoI	GCGC	1 cut(s)	1212
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	3 cut(s)	150, 422, 845
CspCI	CAANNNNNGTGG	2 cut(s)	1032, 1067
CviAII	CATG	5 cut(s)	415, 610, 849, 1223, 1253
DdeI	CTNAG	2 cut(s)	270, 551
DinI	GGCGCC	1 cut(s)	1211
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	848
Eco31I	GGTCTC	1 cut(s)	805
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	971
Eco72I	CACGTG	1 cut(s)	1232
EcoRII	CCWGG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	848
EgeI	GGCGCC	1 cut(s)	1211
EheI	GGCGCC	1 cut(s)	1211
ErhI	CCWWGG	1 cut(s)	848
FaeI	CATG	5 cut(s)	418, 613, 852, 1226, 1256
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	5 cut(s)	414, 609, 848, 1222, 1252
FauI	CCCGC	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	5 cut(s)	32, 35, 38, 41, 714
FokI	GGATG	7 cut(s)	126, 665, 695, 800, 941, 1151, 1256
Fsp4HI	GCNGC	5 cut(s)	32, 35, 38, 41, 714
FspBI	CTAG	2 cut(s)	296, 1143
GlaI	GCGC	1 cut(s)	1211
GluI	GCNGC	5 cut(s)	32, 35, 38, 41, 714
GsuI	CTGGAG	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	1213
HaeIII	GGCC	3 cut(s)	152, 767, 847
HapII	CCGG	1 cut(s)	124
HhaI	GCGC	1 cut(s)	1212
Hin1I	GRCGYC	2 cut(s)	705, 1210
Hin1II	CATG	5 cut(s)	418, 613, 852, 1226, 1256
Hin6I	GCGC	1 cut(s)	1210
HinP1I	GCGC	1 cut(s)	1210
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HindIII	AAGCTT	3 cut(s)	5, 356, 1092
HinfI	GANTC	5 cut(s)	102, 376, 599, 734, 898
HpaI	GTTAAC	1 cut(s)	528
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	2 cut(s)	407, 1175
Hpy166II	GTNNAC	2 cut(s)	528, 615
Hpy188I	TCNGA	5 cut(s)	139, 225, 381, 676, 748
Hpy188III	TCNNGA	9 cut(s)	11, 198, 206, 269, 590, 603, 755, 868, 935
Hpy8I	GTNNAC	2 cut(s)	528, 615
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	4 cut(s)	104, 149, 1105, 1154
HpyCH4III	ACNGT	3 cut(s)	410, 572, 1038
HpyCH4IV	ACGT	3 cut(s)	170, 705, 1231
HpyCH4V	TGCA	5 cut(s)	185, 260, 563, 662, 1043
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 40, 46, 257, 853, 1148
HpyF3I	CTNAG	2 cut(s)	270, 551
HpySE526I	ACGT	3 cut(s)	170, 705, 1231
Hsp92I	GRCGYC	2 cut(s)	705, 1210
Hsp92II	CATG	5 cut(s)	418, 613, 852, 1226, 1256
HspAI	GCGC	1 cut(s)	1210
KasI	GGCGCC	1 cut(s)	1209
KspAI	GTTAAC	1 cut(s)	528
LguI	GCTCTTC	4 cut(s)	90, 113, 1114, 1141
Lsp1109I	GCAGC	5 cut(s)	18, 21, 24, 27, 700
LweI	GCATC	3 cut(s)	226, 550, 1129
MaeI	CTAG	2 cut(s)	296, 1143
MaeII	ACGT	3 cut(s)	170, 705, 1231
MflI	RGATCY	4 cut(s)	202, 427, 502, 822
MhlI	GDGCHC	1 cut(s)	1126
MluCI	AATT	4 cut(s)	264, 317, 484, 750
Mly113I	GGCGCC	1 cut(s)	1210
MlyI	GAGTC	1 cut(s)	892
MroXI	GAANNNNTTC	2 cut(s)	18, 386
MseI	TTAA	3 cut(s)	174, 315, 527
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	6 cut(s)	37, 40, 46, 257, 853, 1148
NarI	GGCGCC	1 cut(s)	1210
NcoI	CCATGG	1 cut(s)	848
NlaIII	CATG	5 cut(s)	418, 613, 852, 1226, 1256
NlaIV	GGNNCC	2 cut(s)	846, 1211
NspI	RCATGY	1 cut(s)	613
NspV	TTCGAA	2 cut(s)	93, 105
PciSI	GCTCTTC	4 cut(s)	90, 113, 1114, 1141
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	219
PdmI	GAANNNNTTC	2 cut(s)	18, 386
PfeI	GAWTC	4 cut(s)	102, 376, 599, 734
PkrI	GCNGC	5 cut(s)	33, 36, 39, 42, 715
PleI	GAGTC	1 cut(s)	892
PluTI	GGCGCC	1 cut(s)	1213
PmaCI	CACGTG	1 cut(s)	1232
PmlI	CACGTG	1 cut(s)	1232
PpsI	GAGTC	1 cut(s)	892
Ppu21I	YACGTR	1 cut(s)	1232
Psp6I	CCWGG	1 cut(s)	474
PspCI	CACGTG	1 cut(s)	1232
PspGI	CCWGG	1 cut(s)	474
PspN4I	GGNNCC	2 cut(s)	846, 1211
PspPI	GGNCC	3 cut(s)	150, 422, 845
PstI	CTGCAG	1 cut(s)	187
PsuI	RGATCY	4 cut(s)	202, 427, 502, 822
SapI	GCTCTTC	4 cut(s)	90, 113, 1114, 1141
SaqAI	TTAA	3 cut(s)	174, 315, 527
SatI	GCNGC	5 cut(s)	32, 35, 38, 41, 714
Sau96I	GGNCC	3 cut(s)	150, 422, 845
SchI	GAGTC	1 cut(s)	892
ScrFI	CCNGG	1 cut(s)	476
SduI	GDGCHC	1 cut(s)	1126
SfaNI	GCATC	3 cut(s)	226, 550, 1129
SfcI	CTRYAG	1 cut(s)	183
SfoI	GGCGCC	1 cut(s)	1211
SfuI	TTCGAA	2 cut(s)	93, 105
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	4 cut(s)	264, 317, 484, 750
SsiI	CCGC	4 cut(s)	47, 67, 164, 393
SspDI	GGCGCC	1 cut(s)	1209
SspMI	CTAG	2 cut(s)	296, 1143
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	848
TaaI	ACNGT	3 cut(s)	410, 572, 1038
TaiI	ACGT	3 cut(s)	173, 708, 1234
TaqI	TCGA	6 cut(s)	12, 93, 105, 311, 589, 1008
TasI	AATT	4 cut(s)	264, 317, 484, 750
TfiI	GAWTC	4 cut(s)	102, 376, 599, 734
Tru1I	TTAA	3 cut(s)	174, 315, 527
Tru9I	TTAA	3 cut(s)	174, 315, 527
TscAI	CASTG	2 cut(s)	187, 577
TseI	GCWGC	5 cut(s)	31, 34, 37, 40, 713
TspDTI	ATGAA	2 cut(s)	17, 403
TspGWI	ACGGA	2 cut(s)	655, 891
TspRI	CASTG	2 cut(s)	187, 577
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	3 cut(s)	264, 317, 750
XceI	RCATGY	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	614
XmnI	GAANNNNTTC	2 cut(s)	18, 386
XspI	CTAG	2 cut(s)	296, 1143
ZraI	GACGTC	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.