Rh2BG288100

Calreticulin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
31851060 .. 31857135
6076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG288100.1

Sequence Viewer

Length: 1257 bp
ATGAGAGAGCGAAACATGAAGCTTCTCGAATCTCTTCTTCTTCTGGTTCCGCTTCTATGCCTCCACTTCCGTCTCGCCGTCTCCGAAATCTTCTTCGAAGAGCGATTTGAAGATGGGTGGAAGAGCCGGTGGGTGTTGTCGGACTGGAAAAGGGCGGAAGGAAAAGCAGGAACGTTTAAGTACACTGCTGGGAAATGGTCTGGAGATCCTGATGATAAAGGCATTCAGACATATAATGATGCCAAGCATTATGCCATATCTGCAAAAATTCCTGAGTTCAGCAACAAAAACAGAACTCTAGTGGTCCAGTATTCGATTAAATTTGAGCAAGACATTGAATGTGGTGGTGGTTACATCAAGCTTCTATCTGGCTATGTGAATCAGAAAAAGTTCGGCGGTGATACCCCATACAGTTTCATGTTTGGACCAGATATGTGTGGCTCACAGACCAAAAAACTCCATCTTATACTTTCTTACCAGGGGCAGAACTATCCCATAAAAAAGGATCTTCAATGTGAAACAGACAAGTTTACTCATTTCTATACATTTATTCTTAGACCTGATGCAACTTACAGTGTCCTTGTTGATAACCGAGAAAGAGATTCTGGAAGCATGTATACTGATTGGGATATCCTTCCTCCACGAAAAATCAAGGATGTCGATGCAAGAAAGCCATCAGACTGGGATGACAGAGAGTACATTGAAGACCTTAAAGCCGTCAAACCAGAGGGATATGATTCAGTTCCATCTGAAATTCCTGATCCAAAGGCCAAGGAGCCCAAGGACTGGGATGAGGAAGAGAACGGATTATGGAGACCACCAAAGATCCCAAATCCAGCTTATAAGGGCCCATGGAAGCGCAAGAAAATCAAGAACCCCAACTACAAGGGGAAGTGGAAGACTCCGTGGATTGATAACCCAGAGTTTGAGGATGATCCTGACCTTTATGTGCTGAAGCCAATAAAATATGTGGGCATTGAAGTTTGGCAGGTAAAAGCTGGTTCAGTTTTCGACAACATTTTGATCTGTGATGATCCACAGTATGCAAAACAAGTGGTAGAAGAGATATTTTCCAATAGAGAGGCTGAAAAAGAAGCTTTTGAGGAAGTGGAGAAGGAGAGAAGAGCACGAGAAGCAGAGGATGCTAGAAGAGCAAGAGAGGAAGGTGAAAGAAAGAAGTGGGAGAGGGATCGTCAGTATGGAGATAGGGGGCGCCGTAGAAGGGTATTGTATTCCTTGATTTTGTTTCATTTGTGA

Protein Analysis

418

Amino Acids

49.28

Weight (kDa)

6.99

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 32 - 268 4.1e-58 Calreticulin family
Calreticulin PF00262 269 - 342 1.2e-19 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
Acc36I ACCTGC 1 cut(s) 979
AccB1I GGYRCC 1 cut(s) 1212
AccB7I CCANNNNNTGG 1 cut(s) 786
AccI GTMKAC 1 cut(s) 617
AciI CCGC 3 cut(s) 50, 155, 396
AclI AACGTT 1 cut(s) 173
AclWI GGATC 7 cut(s) 200, 513, 755, 820, 929, 1028, 1197
AcsI RAATTY 3 cut(s) 267, 320, 753
AcuI CTGAAG 1 cut(s) 974
AcyI GRCGYC 1 cut(s) 1213
AfaI GTAC 2 cut(s) 182, 698
AfiI CCNNNNNNNGG 2 cut(s) 786, 1222
AgsI TTSAA 5 cut(s) 110, 338, 512, 704, 980
AjnI CCWGG 1 cut(s) 477
AluBI AGCT 5 cut(s) 22, 361, 839, 998, 1097
AluI AGCT 5 cut(s) 22, 361, 839, 998, 1097
Alw21I GWGCWC 1 cut(s) 1129
Alw26I GTCTC 3 cut(s) 77, 85, 808
AlwI GGATC 7 cut(s) 200, 513, 755, 820, 929, 1028, 1197
AoxI GGCC 2 cut(s) 768, 847
ApaI GGGCCC 1 cut(s) 851
ApoI RAATTY 3 cut(s) 267, 320, 753
Asp700I GAANNNNTTC 2 cut(s) 33, 389
AspLEI GCGC 2 cut(s) 861, 1215
AspS9I GGNCC 4 cut(s) 304, 425, 847, 848
AsuHPI GGTGA 2 cut(s) 410, 1178
AsuII TTCGAA 1 cut(s) 96
AvaII GGWCC 2 cut(s) 304, 425
BaeGI GKGCMC 1 cut(s) 851
BanI GGYRCC 1 cut(s) 1212
BanII GRGCYC 2 cut(s) 780, 851
BarI GAAGNNNNNNTAC 2 cut(s) 601, 633
BauI CACGAG 1 cut(s) 1128
BbsI GAAGAC 2 cut(s) 711, 905
Bbv12I GWGCWC 1 cut(s) 1129
BccI CCATC 4 cut(s) 107, 468, 682, 754
BceAI ACGGC 3 cut(s) 62, 701, 1200
BciT130I CCWGG 1 cut(s) 479
BcoDI GTCTC 3 cut(s) 77, 85, 808
BfaI CTAG 2 cut(s) 299, 1146
BfoI RGCGCY 1 cut(s) 1216
BfuAI ACCTGC 1 cut(s) 979
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 2 cut(s) 304, 425
BmgT120I GGNCC 4 cut(s) 304, 425, 847, 848
BmiI GGNNCC 4 cut(s) 48, 777, 849, 1214
BmrFI CCNGG 1 cut(s) 479
BmrI ACTGGG 2 cut(s) 691, 796
BmsI GCATC 4 cut(s) 229, 553, 652, 1132
BmuI ACTGGG 2 cut(s) 691, 796
BpiI GAAGAC 2 cut(s) 711, 905
BpmI CTGGAG 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 1213
BsaI GGTCTC 1 cut(s) 808
BsaJI CCNNGG 5 cut(s) 478, 771, 780, 851, 905
Bsc4I CCNNNNNNNGG 2 cut(s) 786, 1222
Bse118I RCCGGY 1 cut(s) 126
Bse1I ACTGG 4 cut(s) 149, 307, 686, 791
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 5 cut(s) 478, 771, 780, 851, 905
BseGI GGATG 5 cut(s) 661, 691, 796, 937, 1147
BseLI CCNNNNNNNGG 2 cut(s) 786, 1222
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 4 cut(s) 149, 307, 686, 791
BseSI GKGCMC 1 cut(s) 851
BseYI CCCAGC 1 cut(s) 188
BshFI GGCC 2 cut(s) 770, 849
BshNI GGYRCC 1 cut(s) 1212
BsiHKAI GWGCWC 1 cut(s) 1129
BsiSI CCGG 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 786, 1222
BsmAI GTCTC 3 cut(s) 77, 85, 808
BsmBI CGTCTC 2 cut(s) 77, 85
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 2 cut(s) 770, 849
Bso31I GGTCTC 1 cut(s) 808
Bsp119I TTCGAA 1 cut(s) 96
Bsp120I GGGCCC 1 cut(s) 847
Bsp1286I GDGCHC 3 cut(s) 780, 851, 1129
Bsp143I GATC 8 cut(s) 205, 505, 760, 825, 934, 1023, 1033, 1189
Bsp19I CCATGG 1 cut(s) 851
BspACI CCGC 3 cut(s) 50, 155, 396
BspANI GGCC 2 cut(s) 770, 849
BspCNI CTCAG 1 cut(s) 265
BspLI GGNNCC 4 cut(s) 48, 777, 849, 1214
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 7 cut(s) 200, 513, 755, 820, 929, 1028, 1197
BspQI GCTCTTC 4 cut(s) 93, 116, 1117, 1144
BspT104I TTCGAA 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 1212
BspTNI GGTCTC 1 cut(s) 808
BsrFI RCCGGY 1 cut(s) 126
BsrI ACTGG 4 cut(s) 149, 307, 686, 791
BssAI RCCGGY 1 cut(s) 126
BssECI CCNNGG 5 cut(s) 478, 771, 780, 851, 905
BssMI GATC 8 cut(s) 205, 505, 760, 825, 934, 1023, 1033, 1189
BssNAI GTATAC 1 cut(s) 618
BssNI GRCGYC 1 cut(s) 1213
BssSI CACGAG 1 cut(s) 1128
BssT1I CCWWGG 3 cut(s) 771, 780, 851
Bst1107I GTATAC 1 cut(s) 618
Bst2BI CACGAG 1 cut(s) 1128
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 3 cut(s) 413, 575, 1041
Bst6I CTCTTC 7 cut(s) 39, 93, 116, 792, 1056, 1117, 1144
BstACI GRCGYC 1 cut(s) 1213
BstAPI GCANNNNNTGC 1 cut(s) 1142
BstBI TTCGAA 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 273, 554
BstDSI CCRYGG 2 cut(s) 851, 905
BstF5I GGATG 5 cut(s) 661, 691, 796, 937, 1147
BstH2I RGCGCY 1 cut(s) 1216
BstHHI GCGC 2 cut(s) 861, 1215
BstKTI GATC 8 cut(s) 208, 508, 763, 828, 937, 1026, 1036, 1192
BstMAI GTCTC 3 cut(s) 77, 85, 808
BstMBI GATC 8 cut(s) 205, 505, 760, 825, 934, 1023, 1033, 1189
BstMWI GCNNNNNNNGC 4 cut(s) 260, 1133, 1142, 1151
BstNI CCWGG 1 cut(s) 479
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 851
BstV2I GAAGAC 2 cut(s) 711, 905
BstX2I RGATCY 3 cut(s) 205, 505, 825
BstXI CCANNNNNNTGG 1 cut(s) 681
BstYI RGATCY 3 cut(s) 205, 505, 825
BstZ17I GTATAC 1 cut(s) 618
BsuRI GGCC 2 cut(s) 770, 849
BtgI CCRYGG 2 cut(s) 851, 905
BtsCI GGATG 5 cut(s) 661, 691, 796, 937, 1147
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 2 cut(s) 183, 580
BveI ACCTGC 1 cut(s) 979
CfoI GCGC 2 cut(s) 861, 1215
Cfr10I RCCGGY 1 cut(s) 126
Cfr13I GGNCC 4 cut(s) 304, 425, 847, 848
Csp6I GTAC 2 cut(s) 181, 697
CspCI CAANNNNNGTGG 2 cut(s) 1035, 1070
CviAII CATG 4 cut(s) 16, 418, 613, 852
CviQI GTAC 2 cut(s) 181, 697
DdeI CTNAG 2 cut(s) 273, 554
DinI GGCGCC 1 cut(s) 1214
DpnI GATC 8 cut(s) 207, 507, 762, 827, 936, 1025, 1035, 1191
DpnII GATC 8 cut(s) 205, 505, 760, 825, 934, 1023, 1033, 1189
Eam1104I CTCTTC 7 cut(s) 39, 93, 116, 792, 1056, 1117, 1144
EarI CTCTTC 7 cut(s) 39, 93, 116, 792, 1056, 1117, 1144
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 3 cut(s) 771, 780, 851
Eco24I GRGCYC 2 cut(s) 780, 851
Eco31I GGTCTC 1 cut(s) 808
Eco32I GATATC 1 cut(s) 631
Eco47I GGWCC 2 cut(s) 304, 425
Eco57I CTGAAG 1 cut(s) 974
EcoO109I RGGNCCY 1 cut(s) 847
EcoRII CCWGG 1 cut(s) 477
EcoRV GATATC 1 cut(s) 631
EcoT14I CCWWGG 3 cut(s) 771, 780, 851
EcoT38I GRGCYC 2 cut(s) 780, 851
EgeI GGCGCC 1 cut(s) 1214
EheI GGCGCC 1 cut(s) 1214
ErhI CCWWGG 3 cut(s) 771, 780, 851
Esp3I CGTCTC 2 cut(s) 77, 85
FaeI CATG 4 cut(s) 19, 421, 616, 855
FatI CATG 4 cut(s) 15, 417, 612, 851
FblI GTMKAC 1 cut(s) 617
FokI GGATG 5 cut(s) 668, 698, 803, 944, 1154
FriOI GRGCYC 2 cut(s) 780, 851
FspBI CTAG 2 cut(s) 299, 1146
GlaI GCGC 2 cut(s) 860, 1214
GsaI CCCAGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 1216
HaeIII GGCC 2 cut(s) 770, 849
HapII CCGG 1 cut(s) 127
HhaI GCGC 2 cut(s) 861, 1215
Hin1I GRCGYC 1 cut(s) 1213
Hin1II CATG 4 cut(s) 19, 421, 616, 855
Hin6I GCGC 2 cut(s) 859, 1213
HinP1I GCGC 2 cut(s) 859, 1213
HindIII AAGCTT 3 cut(s) 20, 359, 1095
HinfI GANTC 5 cut(s) 29, 379, 602, 737, 901
HpaII CCGG 1 cut(s) 127
HphI GGTGA 2 cut(s) 410, 1178
Hpy166II GTNNAC 3 cut(s) 183, 531, 618
Hpy188I TCNGA 6 cut(s) 85, 142, 228, 384, 679, 751
Hpy188III TCNNGA 8 cut(s) 26, 201, 209, 272, 606, 758, 871, 938
Hpy8I GTNNAC 3 cut(s) 183, 531, 618
HpyAV CCTTC 5 cut(s) 152, 644, 1108, 1157, 1215
HpyCH4III ACNGT 3 cut(s) 413, 575, 1041
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 263, 566, 665, 1046
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 1133, 1142, 1151
HpyF3I CTNAG 2 cut(s) 273, 554
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 1213
Hsp92II CATG 4 cut(s) 19, 421, 616, 855
HspAI GCGC 2 cut(s) 859, 1213
KasI GGCGCC 1 cut(s) 1212
Kzo9I GATC 8 cut(s) 205, 505, 760, 825, 934, 1023, 1033, 1189
LguI GCTCTTC 4 cut(s) 93, 116, 1117, 1144
LmnI GCTCC 1 cut(s) 775
LweI GCATC 4 cut(s) 229, 553, 652, 1132
MaeI CTAG 2 cut(s) 299, 1146
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 350
MalI GATC 8 cut(s) 207, 507, 762, 827, 936, 1025, 1035, 1191
MboI GATC 8 cut(s) 205, 505, 760, 825, 934, 1023, 1033, 1189
MflI RGATCY 3 cut(s) 205, 505, 825
MhlI GDGCHC 3 cut(s) 780, 851, 1129
MluCI AATT 3 cut(s) 267, 320, 753
Mly113I GGCGCC 1 cut(s) 1213
MlyI GAGTC 1 cut(s) 895
MmeI TCCRAC 1 cut(s) 120
MroXI GAANNNNTTC 2 cut(s) 33, 389
MseI TTAA 3 cut(s) 177, 318, 711
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 479
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 1 cut(s) 479
MwoI GCNNNNNNNGC 4 cut(s) 260, 1133, 1142, 1151
NarI GGCGCC 1 cut(s) 1213
NcoI CCATGG 1 cut(s) 851
NdeII GATC 8 cut(s) 205, 505, 760, 825, 934, 1023, 1033, 1189
NlaIII CATG 4 cut(s) 19, 421, 616, 855
NlaIV GGNNCC 4 cut(s) 48, 777, 849, 1214
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 1 cut(s) 96
PciSI GCTCTTC 4 cut(s) 93, 116, 1117, 1144
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 2 cut(s) 33, 389
PfeI GAWTC 4 cut(s) 29, 379, 602, 737
PflMI CCANNNNNTGG 1 cut(s) 786
PleI GAGTC 1 cut(s) 895
PluTI GGCGCC 1 cut(s) 1216
PpsI GAGTC 1 cut(s) 895
PsiI TTATAA 1 cut(s) 843
Psp1406I AACGTT 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 477
PspFI CCCAGC 1 cut(s) 188
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 4 cut(s) 48, 777, 849, 1214
PspOMI GGGCCC 1 cut(s) 847
PspPI GGNCC 4 cut(s) 304, 425, 847, 848
PsrI GAACNNNNNNTAC 2 cut(s) 866, 898
PsuI RGATCY 3 cut(s) 205, 505, 825
RsaI GTAC 2 cut(s) 182, 698
RsaNI GTAC 2 cut(s) 181, 697
SapI GCTCTTC 4 cut(s) 93, 116, 1117, 1144
SaqAI TTAA 3 cut(s) 177, 318, 711
Sau3AI GATC 8 cut(s) 205, 505, 760, 825, 934, 1023, 1033, 1189
Sau96I GGNCC 4 cut(s) 304, 425, 847, 848
SchI GAGTC 1 cut(s) 895
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 3 cut(s) 780, 851, 1129
SfaNI GCATC 4 cut(s) 229, 553, 652, 1132
SfoI GGCGCC 1 cut(s) 1214
SfuI TTCGAA 1 cut(s) 96
SinI GGWCC 2 cut(s) 304, 425
Sse9I AATT 3 cut(s) 267, 320, 753
SsiI CCGC 3 cut(s) 50, 155, 396
SspDI GGCGCC 1 cut(s) 1212
SspMI CTAG 2 cut(s) 299, 1146
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 3 cut(s) 771, 780, 851
TaaI ACNGT 3 cut(s) 413, 575, 1041
TaiI ACGT 1 cut(s) 176
TaqI TCGA 5 cut(s) 27, 96, 314, 660, 1011
TasI AATT 3 cut(s) 267, 320, 753
TatI WGTACW 2 cut(s) 180, 696
TfiI GAWTC 4 cut(s) 29, 379, 602, 737
Tru1I TTAA 3 cut(s) 177, 318, 711
Tru9I TTAA 3 cut(s) 177, 318, 711
TscAI CASTG 2 cut(s) 190, 580
TspDTI ATGAA 3 cut(s) 32, 406, 1238
TspGWI ACGGA 3 cut(s) 59, 819, 894
TspRI CASTG 2 cut(s) 190, 580
Van91I CCANNNNNTGG 1 cut(s) 786
VpaK11BI GGWCC 2 cut(s) 304, 425
XapI RAATTY 3 cut(s) 267, 320, 753
XceI RCATGY 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 617
XmnI GAANNNNTTC 2 cut(s) 33, 389
XspI CTAG 2 cut(s) 299, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.