Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002902

Physical Location & Seq

Genomic Coordinates Forward (+)

46791339 .. 46795272

Gene Structure 3934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTCTGGATTTGTTAATCAGAAGAAATTCAGCGGGGATACTCCTTACAGTTTAATGTTCGGACCAGATATATGTGGAACGGACACAAAGAAACTCCATGTTATACTCTCCTACCAAGGCCAGAATTACCCCATCAAGAAGGATTTACAGTGTGAAACTGACAAGTTAACTCATTTCTACACATTTATTCTTAGGCCTGATGCAACTTATAGTGTCCTTGTTGACAATAGAGAAAGGGACTCTGGAAGCATGTATACAGACTGGGATATTCTTCCACCGAGAAAGATCAAAGATGTCAATGCAAAGAAGCCTGCAGACTGGGATATGAGAGAATATATTGATGATCCTAATGACATCAAGCCTGAGGGATATGATTCAATTCCAAAAGAAATTCCAGATCCAACAGCTAAAAAGCCCGCTGACTGGGATGAAGACGAAAGTGGTCTATGGAGAGCTCCAAAGGTACCAAATCCAGCTTACAAAGGACCATGGAGACGCAAGAGAGTCAAGAACCCAAACTATAAAGGCAAATGGAAGACTCCTTGGATTGATAATCCAGAGTTTGAAGATGACCCTGATCTTTATGTGCTTAAGCCAATTAAGTATGTGGGGATTGAGGTTTGGCAGGTAAAGGCTGGTTCAGTTTTCGACAACGTTTTAATTTGTGATGAACCAGAATATGCAAAAAAAGTTGTTGAGGAAGTATTTGCTAATAGAGAGGCTGAAAAGGAGGCTTTTGAAGAAGCAGAGAAAAGGAGGAAAGCACAAGAGGAAGAGGAAGCTCAAAGAGCAAGAGAAGAAGGTGAAAAGAGGAGACGAGAAAGGGGTCATGATCGACGGTATCGGGACAGATATAGAGACAAATATAGAAGGCATCGCGATTGGGACGATTATGATCATGATGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009812 GO:0009987 GO:0010204 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0033554 GO:0034050 GO:0042175 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0080134 GO:0098542 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

303

Amino Acids

36.09

Weight (kDa)

5.64

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calreticulin	PF00262	6 - 147	3.1e-35	Calreticulin family
Calreticulin	PF00262	148 - 221	4.8e-19	Calreticulin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08450 AT1G08450 AT1G08450
fragaria_vesca	FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_6g00230 FvH4_6g00230 FvH4_6g00230
malus_domestica	MD04G1045300.v1.1 MD04G1247000.v1.1 MD12G1263200.v1.1
prunus_persica	Prupe.1G198500_v2.0.a1 Prupe.6G363200_v2.0.a1
pyrus_communis	pycom04g21770 pycom12g24070
rosa_chinensis	RchiOBHm_Chr2g0118841 RchiOBHm_Chr3g0447601
rosa_laevigata	RLG00000018425 RLG00000025985
rosa_multiflora	Rmu_sc0001814.1_g000009 Rmu_sc0003550.1_g000005
rosa_roxburghii	Rroxscaffold_2G00125130 Rroxscaffold_6G00425810
rosa_rugosa	Rorug02G0219200 Rorug02G0603400
rosa_samantha	Rh2AG276300 Rh2BG288100 Rh2DG283200 Rh2DG302300 Rh3AG003600 Rh3BG003100 Rh3CG003400 Rh3DG003400
rosa_wichuraiana	Rw2G021990 Rw3G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	616
Acc65I	GGTACC	1 cut(s)	463
AccB1I	GGYRCC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	254
AccII	CGCG	1 cut(s)	879
AciI	CCGC	2 cut(s)	33, 417
AclI	AACGTT	1 cut(s)	654
AclWI	GGATC	2 cut(s)	338, 392
AcsI	RAATTY	2 cut(s)	26, 390
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	1 cut(s)	423
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	3 cut(s)	378, 566, 740
AluBI	AGCT	5 cut(s)	407, 455, 476, 782, 907
AluI	AGCT	5 cut(s)	407, 455, 476, 782, 907
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	3 cut(s)	487, 808, 852
AlwI	GGATC	2 cut(s)	338, 392
AoxI	GGCC	2 cut(s)	118, 194
ApoI	RAATTY	2 cut(s)	26, 390
Asp700I	GAANNNNTTC	1 cut(s)	26
Asp718I	GGTACC	1 cut(s)	463
AspS9I	GGNCC	2 cut(s)	62, 485
AsuHPI	GGTGA	1 cut(s)	815
AvaII	GGWCC	2 cut(s)	62, 485
AxyI	CCTNAGG	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	457
BarI	GAAGNNNNNNTAC	2 cut(s)	238, 270
BbsI	GAAGAC	2 cut(s)	438, 542
Bbv12I	GWGCWC	1 cut(s)	457
BccI	CCATC	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	31
BclI	TGATCA	1 cut(s)	895
BcoDI	GTCTC	3 cut(s)	487, 808, 852
BfmI	CTRYAG	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	590
BfuAI	ACCTGC	1 cut(s)	616
BfuI	GTATCC	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	62, 485
BmgT120I	GGNCC	2 cut(s)	62, 485
BmiI	GGNNCC	1 cut(s)	465
BmrI	ACTGGG	3 cut(s)	271, 328, 433
BmsI	GCATC	2 cut(s)	190, 883
BmuI	ACTGGG	3 cut(s)	271, 328, 433
BpiI	GAAGAC	2 cut(s)	438, 542
BsaBI	GATNNNNATC	1 cut(s)	894
BsaJI	CCNNGG	3 cut(s)	115, 488, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	3 cut(s)	266, 323, 428
Bse21I	CCTNAGG	1 cut(s)	363
Bse8I	GATNNNNATC	1 cut(s)	894
BseDI	CCNNGG	3 cut(s)	115, 488, 542
BseGI	GGATG	1 cut(s)	433
BseJI	GATNNNNATC	1 cut(s)	894
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	3 cut(s)	266, 323, 428
BseRI	GAGGAG	1 cut(s)	826
Bsh1236I	CGCG	1 cut(s)	879
BshFI	GGCC	2 cut(s)	120, 196
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	457
BslFI	GGGAC	3 cut(s)	251, 860, 899
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	3 cut(s)	487, 808, 852
BsmBI	CGTCTC	2 cut(s)	487, 808
BsmFI	GGGAC	3 cut(s)	251, 860, 899
BsnI	GGCC	2 cut(s)	120, 196
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	6 cut(s)	285, 343, 397, 577, 832, 895
Bsp19I	CCATGG	1 cut(s)	488
Bsp68I	TCGCGA	1 cut(s)	879
BspACI	CCGC	2 cut(s)	33, 417
BspANI	GGCC	2 cut(s)	120, 196
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	879
BspHI	TCATGA	2 cut(s)	829, 898
BspLI	GGNNCC	1 cut(s)	465
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	2 cut(s)	338, 392
BspT107I	GGYRCC	1 cut(s)	463
BspTI	CTTAAG	1 cut(s)	590
BsrI	ACTGG	3 cut(s)	266, 323, 428
BssECI	CCNNGG	3 cut(s)	115, 488, 542
BssMI	GATC	6 cut(s)	285, 343, 397, 577, 832, 895
BssNAI	GTATAC	1 cut(s)	255
BssT1I	CCWWGG	3 cut(s)	115, 488, 542
Bst1107I	GTATAC	1 cut(s)	255
Bst4CI	ACNGT	3 cut(s)	50, 150, 840
Bst6I	CTCTTC	1 cut(s)	768
BstAFI	CTTAAG	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	312, 417
BstDEI	CTNAG	2 cut(s)	191, 363
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	879
BstKTI	GATC	6 cut(s)	288, 346, 400, 580, 835, 898
BstMAI	GTCTC	3 cut(s)	487, 808, 852
BstMBI	GATC	6 cut(s)	285, 343, 397, 577, 832, 895
BstMWI	GCNNNNNNNGC	1 cut(s)	788
BstNSI	RCATGY	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	312
BstUI	CGCG	1 cut(s)	879
BstV2I	GAAGAC	2 cut(s)	438, 542
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BstZ17I	GTATAC	1 cut(s)	255
Bsu36I	CCTNAGG	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	120, 196
BtgI	CCRYGG	1 cut(s)	488
BtgZI	GCGATG	1 cut(s)	860
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	155
BtuMI	TCGCGA	1 cut(s)	879
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	2 cut(s)	312, 417
CciI	TCATGA	2 cut(s)	829, 898
Cfr13I	GGNCC	2 cut(s)	62, 485
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	5 cut(s)	98, 250, 489, 830, 899
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	2 cut(s)	191, 363
DpnI	GATC	6 cut(s)	287, 345, 399, 579, 834, 897
DpnII	GATC	6 cut(s)	285, 343, 397, 577, 832, 895
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
Ecl136II	GAGCTC	1 cut(s)	455
Eco130I	CCWWGG	3 cut(s)	115, 488, 542
Eco147I	AGGCCT	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	457
Eco47I	GGWCC	2 cut(s)	62, 485
Eco53kI	GAGCTC	1 cut(s)	455
Eco81I	CCTNAGG	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	455
EcoT14I	CCWWGG	3 cut(s)	115, 488, 542
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	3 cut(s)	115, 488, 542
Esp3I	CGTCTC	2 cut(s)	487, 808
FaeI	CATG	5 cut(s)	101, 253, 492, 833, 902
FaqI	GGGAC	3 cut(s)	251, 860, 899
FatI	CATG	5 cut(s)	97, 249, 488, 829, 898
FauI	CCCGC	2 cut(s)	26, 424
FbaI	TGATCA	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	254
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	457
HaeIII	GGCC	2 cut(s)	120, 196
HgaI	GACGC	1 cut(s)	504
Hin1II	CATG	5 cut(s)	101, 253, 492, 833, 902
HincII	GTYRAC	2 cut(s)	168, 223
HindII	GTYRAC	2 cut(s)	168, 223
HinfI	GANTC	4 cut(s)	239, 374, 504, 538
HpaI	GTTAAC	1 cut(s)	168
HphI	GGTGA	1 cut(s)	815
Hpy166II	GTNNAC	3 cut(s)	168, 223, 255
Hpy188I	TCNGA	2 cut(s)	21, 62
Hpy8I	GTNNAC	3 cut(s)	168, 223, 255
Hpy99I	CGWCG	1 cut(s)	840
HpyAV	CCTTC	3 cut(s)	133, 794, 864
HpyCH4III	ACNGT	3 cut(s)	50, 150, 840
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	4 cut(s)	203, 302, 314, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	788
HpyF3I	CTNAG	2 cut(s)	191, 363
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	5 cut(s)	101, 253, 492, 833, 902
KpnI	GGTACC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	895
KspAI	GTTAAC	1 cut(s)	168
Kzo9I	GATC	6 cut(s)	285, 343, 397, 577, 832, 895
LmnI	GCTCC	1 cut(s)	460
LweI	GCATC	2 cut(s)	190, 883
MaeII	ACGT	1 cut(s)	654
MalI	GATC	6 cut(s)	287, 345, 399, 579, 834, 897
MboI	GATC	6 cut(s)	285, 343, 397, 577, 832, 895
MboII	GAAGA	8 cut(s)	34, 263, 443, 547, 578, 752, 785, 809
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	6 cut(s)	26, 124, 378, 390, 597, 660
MlyI	GAGTC	3 cut(s)	233, 513, 532
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	9 cut(s)	358, 610, 691, 712, 724, 750, 763, 769, 804
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	6 cut(s)	15, 53, 167, 591, 600, 659
MspA1I	CMGCKG	2 cut(s)	33, 419
MspCI	CTTAAG	1 cut(s)	590
MvnI	CGCG	1 cut(s)	879
MwoI	GCNNNNNNNGC	1 cut(s)	788
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	6 cut(s)	285, 343, 397, 577, 832, 895
NlaIII	CATG	5 cut(s)	101, 253, 492, 833, 902
NlaIV	GGNNCC	1 cut(s)	465
NruI	TCGCGA	1 cut(s)	879
NspI	RCATGY	1 cut(s)	253
PagI	TCATGA	2 cut(s)	829, 898
PceI	AGGCCT	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	374
PleI	GAGTC	3 cut(s)	233, 512, 532
PpsI	GAGTC	3 cut(s)	233, 512, 532
Psp124BI	GAGCTC	1 cut(s)	457
Psp1406I	AACGTT	1 cut(s)	654
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	2 cut(s)	62, 485
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	397
RruI	TCGCGA	1 cut(s)	879
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	457
SaqAI	TTAA	6 cut(s)	15, 53, 167, 591, 600, 659
Sau3AI	GATC	6 cut(s)	285, 343, 397, 577, 832, 895
Sau96I	GGNCC	2 cut(s)	62, 485
SchI	GAGTC	3 cut(s)	233, 513, 532
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	2 cut(s)	190, 883
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	2 cut(s)	62, 485
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	6 cut(s)	26, 124, 378, 390, 597, 660
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	2 cut(s)	33, 417
SstI	GAGCTC	1 cut(s)	457
StuI	AGGCCT	1 cut(s)	196
StyI	CCWWGG	3 cut(s)	115, 488, 542
TaaI	ACNGT	3 cut(s)	50, 150, 840
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	2 cut(s)	648, 835
TasI	AATT	6 cut(s)	26, 124, 378, 390, 597, 660
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	6 cut(s)	15, 53, 167, 591, 600, 659
Tru9I	TTAA	6 cut(s)	15, 53, 167, 591, 600, 659
TscAI	CASTG	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	444, 684
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	155
Vha464I	CTTAAG	1 cut(s)	590
VpaK11BI	GGWCC	2 cut(s)	62, 485
XapI	RAATTY	2 cut(s)	26, 390
XceI	RCATGY	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.