Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002902

Physical Location & Seq

Genomic Coordinates Reverse (-)

19086315 .. 19093335

Gene Structure 7021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G198500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGTTGACCAGCGTAGCTGCAAGTCTTTCTGCATTGATTTCTAGCAGGAAAATGAGAGAGCCAAAAATGAAGCTTCTCAGAGCTCTCAAGCTTCTGCTTCCATTTCTAGTTCTTCACTTGCACGTCGCCTTCTCTGAAGTCTTCTTCGAAGAGCGATTCGAAGATGGGTGGAAGAGCCGGTGGGTCTTATCAGACTGGAAAAGGGCAGAAGGAAAAGCAGGAACGTTTAAGTACACTGCAGGGAAGTGGTCTGGAGATCCGGATGATAAAGGCATTCAGACATATAATGATGCCAAGCATTTTGCCATATCTGCAAAAGTACCTGAGTTCAGCAACAAAAATAGAACTCTAGTTATCCAGTATTCAATTAAATTTGAACAAGAGATCGAATGTGGTGGTGGTTACATCAAACTTATGTCTGGCTATGTCAATCAGAAGAAATTTGGTGGTGATACTCCATACAGTTTCATGTTTGGACCTGATTTATGTGGCACACAGACGAAAAAGCTCCATGTTATTCTTTCTTACCAGGGCCAGAATTATCCCGTAAAAAAGGATCTTCAATGTGAAACAGACAAATTAACTCATTTCTATACATTTATTCTTAGGCCTGATGCAACTTACAGCGTCCTTGTTGATAATAGAGAAAGAGATTCTGGAAGCATGTATACAGATTGGGATATACTTCCTCCACGAAAAATCAAGGATGTCAATGCCAAAAAGCCAGCAGACTGGGACGACAGAGAGTATATTATTGACCCTAATGATGTGAAACCGGAGGGATATGATTCAATTCCATCACAAATTCCTGATCCAAAGGCCAAAGAGCCTGAAGATTGGGATGATGAAGAAAATGGAATTTGGAGGCGACCAAAGATCCCAAATCCAGCATACAAAGGACCATGGAAGCCCAAGAAAATCAAGAACCCCAACTATAAGGGAAAGTGGAAGACTCCTTGGATTGATAACCCAGAGTTTGAGGACGATCCTGACCTTTATGTGCTGAAGCCAATAAAATATGTGGGCATTGAAGTTTGGCAGGTAAAGGCTGGTTCAGTTTTCGACAACATTTTGATTTGTGATGACCCACAGTATGCAAAAGAAGTTGTAGAAGAGATTTTTTCAAATAGAGAAGCTGAAAAGGAAGCTTTTGAGGAAGCAGAAAAGCAGAGAAGAGCTCGAGAAGAAGAGGATGCTAAAAGAGCGAGTGAAGAAGGTGAAAGAAGAAAGAGGGAGAGAGATCGTCAGTATGGAGATAGGAGGCGTCATAAAAGGCATGATCCCCGTGATTATCTGGATGATTACCATGATGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009812 GO:0009987 GO:0010204 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0033554 GO:0034050 GO:0042175 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0080134 GO:0098542 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

440

Amino Acids

51.46

Weight (kDa)

6.33

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08450 AT1G08450 AT1G08450
fragaria_vesca	FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_6g00230 FvH4_6g00230 FvH4_6g00230
malus_domestica	MD04G1045300.v1.1 MD04G1247000.v1.1 MD12G1263200.v1.1
prunus_persica	Prupe.1G198500_v2.0.a1 Prupe.6G363200_v2.0.a1
pyrus_communis	pycom04g21770 pycom12g24070
rosa_chinensis	RchiOBHm_Chr2g0118841 RchiOBHm_Chr3g0447601
rosa_laevigata	RLG00000018425 RLG00000025985
rosa_multiflora	Rmu_sc0001814.1_g000009 Rmu_sc0003550.1_g000005
rosa_roxburghii	Rroxscaffold_2G00125130 Rroxscaffold_6G00425810
rosa_rugosa	Rorug02G0219200 Rorug02G0603400
rosa_samantha	Rh2AG276300 Rh2BG288100 Rh2DG283200 Rh2DG302300 Rh3AG003600 Rh3BG003100 Rh3CG003400 Rh3DG003400
rosa_wichuraiana	Rw2G021990 Rw3G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1030
AccI	GTMKAC	1 cut(s)	668
AccIII	TCCGGA	1 cut(s)	259
AclI	AACGTT	1 cut(s)	224
AclWI	GGATC	6 cut(s)	251, 564, 806, 871, 980, 1274
AcsI	RAATTY	4 cut(s)	371, 440, 804, 858
AcuI	CTGAAG	3 cut(s)	156, 852, 1025
AcyI	GRCGYC	1 cut(s)	1264
AfaI	GTAC	2 cut(s)	233, 321
AgsI	TTSAA	6 cut(s)	366, 377, 563, 792, 1031, 1125
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	528
AluBI	AGCT	8 cut(s)	17, 73, 83, 91, 508, 1136, 1148, 1178
AluI	AGCT	8 cut(s)	17, 73, 83, 91, 508, 1136, 1148, 1178
Alw21I	GWGCWC	2 cut(s)	85, 1180
AlwI	GGATC	6 cut(s)	251, 564, 806, 871, 980, 1274
Ama87I	CYCGRG	1 cut(s)	1179
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	3 cut(s)	532, 608, 819
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	4 cut(s)	371, 440, 804, 858
AspS9I	GGNCC	3 cut(s)	476, 532, 899
AsuHPI	GGTGA	2 cut(s)	461, 1229
AsuII	TTCGAA	2 cut(s)	147, 159
AvaI	CYCGRG	1 cut(s)	1179
AvaII	GGWCC	2 cut(s)	476, 899
BanII	GRGCYC	2 cut(s)	85, 1180
BarI	GAAGNNNNNNTAC	2 cut(s)	652, 684
BbsI	GAAGAC	2 cut(s)	133, 956
Bbv12I	GWGCWC	2 cut(s)	85, 1180
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	158, 805
BciT130I	CCWGG	1 cut(s)	530
BfaI	CTAG	3 cut(s)	42, 107, 350
BfmI	CTRYAG	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	1030
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	2 cut(s)	476, 899
BmeT110I	CYCGRG	1 cut(s)	1179
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	476, 532, 899
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	742
BmsI	GCATC	3 cut(s)	280, 604, 1183
BmuI	ACTGGG	1 cut(s)	742
BpiI	GAAGAC	2 cut(s)	133, 956
BplI	GAGNNNNNCTC	2 cut(s)	1162, 1194
BpmI	CTGGAG	1 cut(s)	273
Bpu14I	TTCGAA	2 cut(s)	147, 159
BpuEI	CTTGAG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	1264
BsaJI	CCNNGG	3 cut(s)	529, 902, 956
BsaWI	WCCGGW	2 cut(s)	259, 775
Bse118I	RCCGGY	1 cut(s)	177
Bse1I	ACTGG	3 cut(s)	200, 358, 737
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	3 cut(s)	529, 902, 956
BseGI	GGATG	5 cut(s)	268, 712, 847, 1198, 1303
BseMII	CTCAG	2 cut(s)	91, 315
BseNI	ACTGG	3 cut(s)	200, 358, 737
BseXI	GCAGC	1 cut(s)	4
BshFI	GGCC	3 cut(s)	534, 610, 821
BsiHKAI	GWGCWC	2 cut(s)	85, 1180
BsiHKCI	CYCGRG	1 cut(s)	1179
BsiSI	CCGG	3 cut(s)	178, 260, 776
BslFI	GGGAC	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	3 cut(s)	534, 610, 821
BsoBI	CYCGRG	1 cut(s)	1179
Bsp119I	TTCGAA	2 cut(s)	147, 159
Bsp1286I	GDGCHC	2 cut(s)	85, 1180
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	8 cut(s)	256, 384, 556, 811, 876, 985, 1240, 1279
Bsp19I	CCATGG	1 cut(s)	902
BspANI	GGCC	3 cut(s)	534, 610, 821
BspCNI	CTCAG	2 cut(s)	90, 316
BspEI	TCCGGA	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	1030
BspPI	GGATC	6 cut(s)	251, 564, 806, 871, 980, 1274
BspQI	GCTCTTC	3 cut(s)	144, 167, 1168
BspT104I	TTCGAA	2 cut(s)	147, 159
BsrFI	RCCGGY	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	200, 358, 737
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	3 cut(s)	529, 902, 956
BssMI	GATC	8 cut(s)	256, 384, 556, 811, 876, 985, 1240, 1279
BssNAI	GTATAC	1 cut(s)	669
BssNI	GRCGYC	1 cut(s)	1264
BssT1I	CCWWGG	2 cut(s)	902, 956
Bst1107I	GTATAC	1 cut(s)	669
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	2 cut(s)	464, 1092
Bst6I	CTCTTC	5 cut(s)	144, 167, 1107, 1168, 1182
BstACI	GRCGYC	1 cut(s)	1264
BstBI	TTCGAA	2 cut(s)	147, 159
BstC8I	GCNNGC	1 cut(s)	726
BstDEI	CTNAG	3 cut(s)	77, 324, 605
BstDSI	CCRYGG	1 cut(s)	902
BstF5I	GGATG	5 cut(s)	268, 712, 847, 1198, 1303
BstKTI	GATC	8 cut(s)	259, 387, 559, 814, 879, 988, 1243, 1282
BstMBI	GATC	8 cut(s)	256, 384, 556, 811, 876, 985, 1240, 1279
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 1202
BstNI	CCWGG	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	2 cut(s)	133, 956
BstX2I	RGATCY	3 cut(s)	256, 556, 876
BstXI	CCANNNNNNTGG	1 cut(s)	732
BstYI	RGATCY	3 cut(s)	256, 556, 876
BstZ17I	GTATAC	1 cut(s)	669
BsuRI	GGCC	3 cut(s)	534, 610, 821
BtgI	CCRYGG	1 cut(s)	902
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	5 cut(s)	268, 712, 847, 1198, 1303
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	1030
Cac8I	GCNNGC	1 cut(s)	726
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	476, 532, 899
CseI	GACGC	2 cut(s)	616, 1253
Csp6I	GTAC	2 cut(s)	232, 320
CviAII	CATG	6 cut(s)	469, 512, 664, 903, 1277, 1307
CviQI	GTAC	2 cut(s)	232, 320
DdeI	CTNAG	3 cut(s)	77, 324, 605
DpnI	GATC	8 cut(s)	258, 386, 558, 813, 878, 987, 1242, 1281
DpnII	GATC	8 cut(s)	256, 384, 556, 811, 876, 985, 1240, 1279
Eam1104I	CTCTTC	5 cut(s)	144, 167, 1107, 1168, 1182
EarI	CTCTTC	5 cut(s)	144, 167, 1107, 1168, 1182
Ecl136II	GAGCTC	2 cut(s)	83, 1178
Eco130I	CCWWGG	2 cut(s)	902, 956
Eco147I	AGGCCT	1 cut(s)	610
Eco24I	GRGCYC	2 cut(s)	85, 1180
Eco47I	GGWCC	2 cut(s)	476, 899
Eco53kI	GAGCTC	2 cut(s)	83, 1178
Eco57I	CTGAAG	3 cut(s)	156, 852, 1025
Eco88I	CYCGRG	1 cut(s)	1179
EcoICRI	GAGCTC	2 cut(s)	83, 1178
EcoRII	CCWGG	1 cut(s)	528
EcoT14I	CCWWGG	2 cut(s)	902, 956
EcoT38I	GRGCYC	2 cut(s)	85, 1180
ErhI	CCWWGG	2 cut(s)	902, 956
FaeI	CATG	6 cut(s)	472, 515, 667, 906, 1280, 1310
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	6 cut(s)	468, 511, 663, 902, 1276, 1306
FblI	GTMKAC	1 cut(s)	668
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	5 cut(s)	275, 719, 854, 1205, 1310
FriOI	GRGCYC	2 cut(s)	85, 1180
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	3 cut(s)	42, 107, 350
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	534, 610, 821
HapII	CCGG	3 cut(s)	178, 260, 776
HgaI	GACGC	2 cut(s)	616, 1253
Hin1I	GRCGYC	1 cut(s)	1264
Hin1II	CATG	6 cut(s)	472, 515, 667, 906, 1280, 1310
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	3 cut(s)	71, 89, 1146
HinfI	GANTC	4 cut(s)	156, 653, 788, 952
HpaII	CCGG	3 cut(s)	178, 260, 776
HphI	GGTGA	2 cut(s)	461, 1229
Hpy166II	GTNNAC	3 cut(s)	6, 234, 669
Hpy188I	TCNGA	5 cut(s)	80, 136, 193, 279, 435
Hpy188III	TCNNGA	8 cut(s)	252, 260, 657, 809, 922, 989, 1181, 1295
Hpy8I	GTNNAC	3 cut(s)	6, 234, 669
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	139, 203, 1208
HpyCH4III	ACNGT	2 cut(s)	464, 1092
HpyCH4IV	ACGT	2 cut(s)	123, 224
HpyCH4V	TGCA	7 cut(s)	20, 32, 121, 239, 314, 617, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 1202
HpyF3I	CTNAG	3 cut(s)	77, 324, 605
HpySE526I	ACGT	2 cut(s)	123, 224
Hsp92I	GRCGYC	1 cut(s)	1264
Hsp92II	CATG	6 cut(s)	472, 515, 667, 906, 1280, 1310
Kpn2I	TCCGGA	1 cut(s)	259
Kzo9I	GATC	8 cut(s)	256, 384, 556, 811, 876, 985, 1240, 1279
LguI	GCTCTTC	3 cut(s)	144, 167, 1168
LmnI	GCTCC	1 cut(s)	513
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	3 cut(s)	280, 604, 1183
MaeI	CTAG	3 cut(s)	42, 107, 350
MaeII	ACGT	2 cut(s)	123, 224
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	8 cut(s)	258, 386, 558, 813, 878, 987, 1242, 1281
MboI	GATC	8 cut(s)	256, 384, 556, 811, 876, 985, 1240, 1279
MflI	RGATCY	3 cut(s)	256, 556, 876
MhlI	GDGCHC	2 cut(s)	85, 1180
MluCI	AATT	8 cut(s)	366, 371, 440, 538, 578, 792, 804, 858
MlyI	GAGTC	1 cut(s)	946
MnlI	CCTC	8 cut(s)	699, 772, 858, 973, 1147, 1183, 1224, 1254
MroI	TCCGGA	1 cut(s)	259
MseI	TTAA	3 cut(s)	228, 369, 581
MspI	CCGG	3 cut(s)	178, 260, 776
MspR9I	CCNGG	1 cut(s)	530
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	2 cut(s)	311, 1202
NcoI	CCATGG	1 cut(s)	902
NdeII	GATC	8 cut(s)	256, 384, 556, 811, 876, 985, 1240, 1279
NlaIII	CATG	6 cut(s)	472, 515, 667, 906, 1280, 1310
NspI	RCATGY	1 cut(s)	667
NspV	TTCGAA	2 cut(s)	147, 159
PaeR7I	CTCGAG	1 cut(s)	1179
PceI	AGGCCT	1 cut(s)	610
PciSI	GCTCTTC	3 cut(s)	144, 167, 1168
PctI	GAATGC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	156, 653, 788
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	946
PpsI	GAGTC	1 cut(s)	946
Psp124BI	GAGCTC	2 cut(s)	85, 1180
Psp1406I	AACGTT	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspPI	GGNCC	3 cut(s)	476, 532, 899
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	3 cut(s)	256, 556, 876
RsaI	GTAC	2 cut(s)	233, 321
RsaNI	GTAC	2 cut(s)	232, 320
SacI	GAGCTC	2 cut(s)	85, 1180
SapI	GCTCTTC	3 cut(s)	144, 167, 1168
SaqAI	TTAA	3 cut(s)	228, 369, 581
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	8 cut(s)	256, 384, 556, 811, 876, 985, 1240, 1279
Sau96I	GGNCC	3 cut(s)	476, 532, 899
SchI	GAGTC	1 cut(s)	946
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	85, 1180
SfaNI	GCATC	3 cut(s)	280, 604, 1183
SfcI	CTRYAG	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	1179
SfuI	TTCGAA	2 cut(s)	147, 159
SinI	GGWCC	2 cut(s)	476, 899
SlaI	CTCGAG	1 cut(s)	1179
SmlI	CTYRAG	2 cut(s)	86, 1179
SmoI	CTYRAG	2 cut(s)	86, 1179
Sse9I	AATT	8 cut(s)	366, 371, 440, 538, 578, 792, 804, 858
SseBI	AGGCCT	1 cut(s)	610
SspMI	CTAG	3 cut(s)	42, 107, 350
SstI	GAGCTC	2 cut(s)	85, 1180
StuI	AGGCCT	1 cut(s)	610
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	2 cut(s)	902, 956
TaaI	ACNGT	2 cut(s)	464, 1092
TaiI	ACGT	2 cut(s)	126, 227
TaqI	TCGA	5 cut(s)	147, 159, 387, 1062, 1180
TasI	AATT	8 cut(s)	366, 371, 440, 538, 578, 792, 804, 858
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	156, 653, 788
Tru1I	TTAA	3 cut(s)	228, 369, 581
Tru9I	TTAA	3 cut(s)	228, 369, 581
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	3 cut(s)	83, 457, 861
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	476, 899
XapI	RAATTY	4 cut(s)	371, 440, 804, 858
XceI	RCATGY	1 cut(s)	667
XhoI	CTCGAG	1 cut(s)	1179
XmiI	GTMKAC	1 cut(s)	668
XspI	CTAG	3 cut(s)	42, 107, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.