MD12G1263200.v1.1

Calreticulin-3-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
32966167 .. 32970643
4477 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1263200.v1.1.491

Sequence Viewer

Length: 1275 bp
ATGGCGAAGCGGCAAAAGCATGATGAGCTGCTTCTGCTAGTATTATCACTCTCCTTGCTCTCCTTTTGCTTTCGTTCTTCGCTTTCGGAGATCATTTTCGAGGAGCGCTTCGACGACGACGGATGGCGAAGCCGTTGGGTCAAATCTGACTGGAAAAGCAGTGAAGGTAAAGCAGGTTCCTTTAAACATACAGCCGGAAAGTGGGCCGGTGACCACGATGATAGAGGAATTCAGACATCTAATGATGCCAAGCATTTTGCCATATCTGCAAAGATACCGGAGTTCAGCAACAAGAACAGGACGTTGGTCCTCCAATACTCGATCAAATTTGAGCAGGAAATTGAATGTGGCGGCGGTTACATAAAGCTTATGTCTGGATTTGTTAATCAGAAGAAATTCGGCGGGGACACTCCATACAGTTTAATGTTTGGCCCCGATATATGTGGCACGGACACAAAGAAGCTCCATGTCATACTCTCCTACCAAGGCCAGAATTACCCCATCAAGAAGGCCTTAGAGTGTGAAACTGACAAGTTGACTCATTTCTACACATTCATTCTTCGGCCTGATGCAACTTATAGTGTCCTAATAGACAACCGAGAAAAGGATTCTGGAAGCATGTACACAGATTGGGATATTCTTCCTCCAAGAAAGATAAAAGATGTTACTGCAAAGAAGCCAGCAGACTGGGATCTTAGAGAATACATTGATGATCCTAATCACATCAAACCTGAGGGATATGATTCAATTCCGAGAGAAATTCCAGATCCAAAAGCAAAAGAGCCCGAAGACTGGGATGATGAAGAGAACGGTCTGTGGAAAGCTCCAAAGATACCAAATCCAGCTTACAAGGGACCATGGAGACCCAAGAAAATCAAGAACCCTAATTACAAGGGGAAATGGAAGATTCCTTGGATTGATAATCCAGAGTTTGAAGATGATCCTGATCTCTATGTGCTTAAGCCAATTAAGTATGTTGGTATCGAAGTTTGGCAGGTAAAGGCTGGTTCAGTTTTCGACAACGTTTTAATTTGTGATGATCCGGATTATGCAAAACAAGTGGTCGAGGAAGTTTTCGCCAATAGAGAGGTCGAAAAGGATGCCCTTGAAGAAGCAGAAAAAAGGAGGAAAGCGCAAGAGGAAGAGGAAGCTCAAAGAGCAAGAGAAGAGGGTGAAAGGAGGAGAAGAGATAGGGATCGAGGTCACCGGGACAGGCATAGAGACAGATACCGAAGGCACCGTCACTGGGATGACTATGATCATGACGAGCTATGA

Protein Analysis

425

Amino Acids

49.83

Weight (kDa)

5.93

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 33 - 270 5.1e-57 Calreticulin family
Calreticulin PF00262 271 - 344 5.6e-19 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 164, 985
AccB1I GGYRCC 1 cut(s) 1236
AccIII TCCGGA 1 cut(s) 1042
AciI CCGC 4 cut(s) 10, 351, 354, 402
AclI AACGTT 1 cut(s) 1023
AclWI GGATC 6 cut(s) 699, 707, 761, 935, 1034, 1203
AcsI RAATTY 4 cut(s) 228, 326, 395, 759
AfaI GTAC 1 cut(s) 623
AfeI AGCGCT 1 cut(s) 107
AfiI CCNNNNNNNGG 4 cut(s) 201, 604, 792, 1246
AflII CTTAAG 1 cut(s) 959
AgsI TTSAA 4 cut(s) 344, 747, 935, 1109
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 7 cut(s) 28, 367, 463, 824, 845, 1151, 1270
AluI AGCT 7 cut(s) 28, 367, 463, 824, 845, 1151, 1270
Alw26I GTCTC 2 cut(s) 856, 1215
AlwI GGATC 6 cut(s) 699, 707, 761, 935, 1034, 1203
Aor13HI TCCGGA 1 cut(s) 1042
Aor51HI AGCGCT 1 cut(s) 107
AoxI GGCC 5 cut(s) 204, 430, 487, 510, 563
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 4 cut(s) 228, 326, 395, 759
ArsI GACNNNNNNTTYG 2 cut(s) 1225, 1257
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 2 cut(s) 108, 1135
AspS9I GGNCC 4 cut(s) 204, 307, 431, 854
AsuC2I CCSGG 1 cut(s) 1208
AsuHPI GGTGA 3 cut(s) 221, 1184, 1196
AvaII GGWCC 2 cut(s) 307, 854
AxyI CCTNAGG 1 cut(s) 732
BaeI ACNNNNGTAYC 2 cut(s) 266, 299
BanI GGYRCC 1 cut(s) 1236
BanII GRGCYC 1 cut(s) 786
BbsI GAAGAC 1 cut(s) 795
BbvI GCAGC 1 cut(s) 15
BccI CCATC 2 cut(s) 117, 509
BceAI ACGGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 1082, 1116
BclI TGATCA 1 cut(s) 1258
BcnI CCSGG 1 cut(s) 1208
BcoDI GTCTC 2 cut(s) 856, 1215
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 109
BfrI CTTAAG 1 cut(s) 959
BfuAI ACCTGC 2 cut(s) 164, 985
BisI GCNGC 3 cut(s) 11, 29, 352
BlsI GCNGC 3 cut(s) 12, 30, 353
Bme1390I CCNGG 1 cut(s) 1208
Bme18I GGWCC 2 cut(s) 307, 854
BmgT120I GGNCC 4 cut(s) 204, 307, 431, 854
BmiI GGNNCC 4 cut(s) 178, 433, 855, 1238
BmrFI CCNGG 1 cut(s) 1208
BmrI ACTGGG 3 cut(s) 697, 802, 1255
BmsI GCATC 3 cut(s) 235, 559, 1090
BmuI ACTGGG 3 cut(s) 697, 802, 1255
BoxI GACNNNNGTC 1 cut(s) 305
BpiI GAAGAC 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 1208
BsaBI GATNNNNATC 3 cut(s) 717, 945, 1194
BsaI GGTCTC 1 cut(s) 856
BsaJI CCNNGG 3 cut(s) 484, 857, 911
BsaWI WCCGGW 2 cut(s) 277, 1042
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 604, 792, 1246
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 4 cut(s) 155, 692, 797, 1250
Bse21I CCTNAGG 1 cut(s) 732
Bse8I GATNNNNATC 3 cut(s) 717, 945, 1194
BseAI TCCGGA 1 cut(s) 1042
BseDI CCNNGG 3 cut(s) 484, 857, 911
BseGI GGATG 4 cut(s) 128, 802, 1105, 1255
BseJI GATNNNNATC 3 cut(s) 717, 945, 1194
BseLI CCNNNNNNNGG 4 cut(s) 201, 604, 792, 1246
BseMII CTCAG 1 cut(s) 723
BseNI ACTGG 4 cut(s) 155, 692, 797, 1250
BseRI GAGGAG 2 cut(s) 116, 1195
BseXI GCAGC 1 cut(s) 15
BshFI GGCC 5 cut(s) 206, 432, 489, 512, 565
BshNI GGYRCC 1 cut(s) 1236
BsiSI CCGG 5 cut(s) 195, 207, 278, 1043, 1207
BslFI GGGAC 3 cut(s) 419, 867, 1223
BslI CCNNNNNNNGG 4 cut(s) 201, 604, 792, 1246
BsmAI GTCTC 2 cut(s) 856, 1215
BsmFI GGGAC 3 cut(s) 419, 867, 1223
BsnI GGCC 5 cut(s) 206, 432, 489, 512, 565
Bso31I GGTCTC 1 cut(s) 856
Bsp1286I GDGCHC 1 cut(s) 786
Bsp13I TCCGGA 1 cut(s) 1042
Bsp1407I TGTACA 1 cut(s) 621
Bsp19I CCATGG 1 cut(s) 857
BspACI CCGC 4 cut(s) 10, 351, 354, 402
BspANI GGCC 5 cut(s) 206, 432, 489, 512, 565
BspCNI CTCAG 1 cut(s) 724
BspEI TCCGGA 1 cut(s) 1042
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 4 cut(s) 178, 433, 855, 1238
BspMI ACCTGC 2 cut(s) 164, 985
BspPI GGATC 6 cut(s) 699, 707, 761, 935, 1034, 1203
BspT107I GGYRCC 1 cut(s) 1236
BspTI CTTAAG 1 cut(s) 959
BspTNI GGTCTC 1 cut(s) 856
BsrFI RCCGGY 1 cut(s) 206
BsrGI TGTACA 1 cut(s) 621
BsrI ACTGG 4 cut(s) 155, 692, 797, 1250
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 3 cut(s) 484, 857, 911
BssT1I CCWWGG 3 cut(s) 484, 857, 911
Bst4CI ACNGT 3 cut(s) 419, 812, 1241
Bst6I CTCTTC 4 cut(s) 798, 1137, 1161, 1180
BstAFI CTTAAG 1 cut(s) 959
BstAUI TGTACA 1 cut(s) 621
BstC8I GCNNGC 1 cut(s) 681
BstDEI CTNAG 3 cut(s) 514, 695, 732
BstDSI CCRYGG 1 cut(s) 857
BstEII GGTNACC 2 cut(s) 209, 1202
BstF5I GGATG 4 cut(s) 128, 802, 1105, 1255
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 2 cut(s) 108, 1135
BstMAI GTCTC 2 cut(s) 856, 1215
BstMWI GCNNNNNNNGC 5 cut(s) 16, 25, 34, 266, 1157
BstNSI RCATGY 1 cut(s) 622
BstPAI GACNNNNGTC 1 cut(s) 305
BstPI GGTNACC 2 cut(s) 209, 1202
BstSCI CCNGG 1 cut(s) 1206
BstV1I GCAGC 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 795
BstX2I RGATCY 2 cut(s) 691, 766
BstXI CCANNNNNNTGG 1 cut(s) 687
BstYI RGATCY 2 cut(s) 691, 766
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 5 cut(s) 206, 432, 489, 512, 565
BtgI CCRYGG 1 cut(s) 857
BtsCI GGATG 4 cut(s) 128, 802, 1105, 1255
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 2 cut(s) 166, 1243
BveI ACCTGC 2 cut(s) 164, 985
Cac8I GCNNGC 1 cut(s) 681
CciI TCATGA 1 cut(s) 1261
CfoI GCGC 2 cut(s) 108, 1135
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 4 cut(s) 204, 307, 431, 854
Csp6I GTAC 1 cut(s) 622
CspCI CAANNNNNGTGG 2 cut(s) 1041, 1076
CviAII CATG 5 cut(s) 20, 467, 619, 858, 1262
CviQI GTAC 1 cut(s) 622
DdeI CTNAG 3 cut(s) 514, 695, 732
DraI TTTAAA 1 cut(s) 184
Eam1104I CTCTTC 4 cut(s) 798, 1137, 1161, 1180
EarI CTCTTC 4 cut(s) 798, 1137, 1161, 1180
Eco130I CCWWGG 3 cut(s) 484, 857, 911
Eco147I AGGCCT 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 786
Eco31I GGTCTC 1 cut(s) 856
Eco47I GGWCC 2 cut(s) 307, 854
Eco47III AGCGCT 1 cut(s) 107
Eco81I CCTNAGG 1 cut(s) 732
Eco91I GGTNACC 2 cut(s) 209, 1202
EcoO65I GGTNACC 2 cut(s) 209, 1202
EcoRI GAATTC 1 cut(s) 228
EcoT14I CCWWGG 3 cut(s) 484, 857, 911
EcoT38I GRGCYC 1 cut(s) 786
ErhI CCWWGG 3 cut(s) 484, 857, 911
FaeI CATG 5 cut(s) 23, 470, 622, 861, 1265
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FaqI GGGAC 3 cut(s) 419, 867, 1223
FatI CATG 5 cut(s) 19, 466, 618, 857, 1261
FauI CCCGC 1 cut(s) 395
FbaI TGATCA 1 cut(s) 1258
Fnu4HI GCNGC 3 cut(s) 11, 29, 352
FokI GGATG 4 cut(s) 135, 809, 1112, 1262
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 3 cut(s) 11, 29, 352
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 107, 1134
GluI GCNGC 3 cut(s) 11, 29, 352
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 5 cut(s) 206, 432, 489, 512, 565
HapII CCGG 5 cut(s) 195, 207, 278, 1043, 1207
HhaI GCGC 2 cut(s) 108, 1135
Hin1II CATG 5 cut(s) 23, 470, 622, 861, 1265
Hin6I GCGC 2 cut(s) 106, 1133
HinP1I GCGC 2 cut(s) 106, 1133
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 4 cut(s) 538, 608, 743, 907
HpaII CCGG 5 cut(s) 195, 207, 278, 1043, 1207
HphI GGTGA 3 cut(s) 221, 1184, 1196
Hpy166II GTNNAC 2 cut(s) 537, 624
Hpy188I TCNGA 5 cut(s) 88, 148, 234, 390, 753
Hpy188III TCNNGA 9 cut(s) 375, 505, 612, 764, 877, 926, 944, 1043, 1262
Hpy8I GTNNAC 2 cut(s) 537, 624
Hpy99I CGWCG 3 cut(s) 116, 119, 122
HpyAV CCTTC 3 cut(s) 158, 502, 1227
HpyCH4III ACNGT 3 cut(s) 419, 812, 1241
HpyCH4IV ACGT 2 cut(s) 302, 1023
HpyCH4V TGCA 4 cut(s) 269, 572, 671, 1052
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 25, 34, 266, 1157
HpyF3I CTNAG 3 cut(s) 514, 695, 732
HpySE526I ACGT 2 cut(s) 302, 1023
Hsp92II CATG 5 cut(s) 23, 470, 622, 861, 1265
HspAI GCGC 2 cut(s) 106, 1133
Kpn2I TCCGGA 1 cut(s) 1042
Ksp22I TGATCA 1 cut(s) 1258
LmnI GCTCC 3 cut(s) 103, 468, 829
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 3 cut(s) 235, 559, 1090
MaeI CTAG 1 cut(s) 38
MaeII ACGT 2 cut(s) 302, 1023
MaeIII GTNAC 5 cut(s) 209, 356, 664, 1202, 1241
MflI RGATCY 2 cut(s) 691, 766
MhlI GDGCHC 1 cut(s) 786
MlyI GAGTC 1 cut(s) 532
MroI TCCGGA 1 cut(s) 1042
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 6 cut(s) 183, 384, 422, 960, 969, 1028
MslI CAYNNNNRTG 1 cut(s) 1248
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 5 cut(s) 195, 207, 278, 1043, 1207
MspR9I CCNGG 1 cut(s) 1208
MwoI GCNNNNNNNGC 5 cut(s) 16, 25, 34, 266, 1157
NciI CCSGG 1 cut(s) 1208
NcoI CCATGG 1 cut(s) 857
NlaIII CATG 5 cut(s) 23, 470, 622, 861, 1265
NlaIV GGNNCC 4 cut(s) 178, 433, 855, 1238
NmuCI GTSAC 3 cut(s) 209, 1202, 1241
NspI RCATGY 1 cut(s) 622
PagI TCATGA 1 cut(s) 1261
PceI AGGCCT 1 cut(s) 512
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 3 cut(s) 608, 743, 907
PkrI GCNGC 3 cut(s) 12, 30, 353
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PshAI GACNNNNGTC 1 cut(s) 305
Psp1406I AACGTT 1 cut(s) 1023
PspEI GGTNACC 2 cut(s) 209, 1202
PspN4I GGNNCC 4 cut(s) 178, 433, 855, 1238
PspPI GGNCC 4 cut(s) 204, 307, 431, 854
PsrI GAACNNNNNNTAC 4 cut(s) 160, 192, 872, 904
PsuI RGATCY 2 cut(s) 691, 766
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 1248
SaqAI TTAA 6 cut(s) 183, 384, 422, 960, 969, 1028
SatI GCNGC 3 cut(s) 11, 29, 352
Sau96I GGNCC 4 cut(s) 204, 307, 431, 854
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 1 cut(s) 1208
SduI GDGCHC 1 cut(s) 786
SfaNI GCATC 3 cut(s) 235, 559, 1090
SinI GGWCC 2 cut(s) 307, 854
SmiMI CAYNNNNRTG 1 cut(s) 1248
SmlI CTYRAG 1 cut(s) 959
SmoI CTYRAG 1 cut(s) 959
SseBI AGGCCT 1 cut(s) 512
SsiI CCGC 4 cut(s) 10, 351, 354, 402
SspMI CTAG 1 cut(s) 38
StuI AGGCCT 1 cut(s) 512
StyD4I CCNGG 1 cut(s) 1206
StyI CCWWGG 3 cut(s) 484, 857, 911
TaaI ACNGT 3 cut(s) 419, 812, 1241
TaiI ACGT 2 cut(s) 305, 1026
TaqI TCGA 8 cut(s) 99, 111, 320, 984, 1017, 1065, 1092, 1198
TatI WGTACW 1 cut(s) 621
TauI GCSGC 2 cut(s) 13, 354
TfiI GAWTC 3 cut(s) 608, 743, 907
Tru1I TTAA 6 cut(s) 183, 384, 422, 960, 969, 1028
Tru9I TTAA 6 cut(s) 183, 384, 422, 960, 969, 1028
TscAI CASTG 2 cut(s) 166, 1250
TseFI GTSAC 3 cut(s) 209, 1202, 1241
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 3 cut(s) 209, 1202, 1241
TspDTI ATGAA 2 cut(s) 544, 816
TspGWI ACGGA 2 cut(s) 135, 464
TspRI CASTG 2 cut(s) 166, 1250
Vha464I CTTAAG 1 cut(s) 959
VpaK11BI GGWCC 2 cut(s) 307, 854
XapI RAATTY 4 cut(s) 228, 326, 395, 759
XceI RCATGY 1 cut(s) 622
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.