Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002902

Physical Location & Seq

Genomic Coordinates Forward (+)

285229 .. 289231

Gene Structure 4003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG003400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCAAAGCAGCTTAAGCCTCAAGGGGGCCTCTCTGTGCTAATAGCACTGTCCTTACTTTTCTTCAACTTCCATTGTTCACGCTCAGAAATCATTTTTGAAGAGCGTTTCGAAGATGGGTGGAAAAGCCGTTGGGTTCAGTCCGACTGGAAAAGAAGTGAAGGTAAAGCAGGTTACTTTAAACACGCTGCTGGAAAGTGGCACGGAGACCCAGATGATAAAGGAATTCAGACATCTAGTGATGCCAAACATTTTGCCATATCTGCAAAGATACCGGAGTTCAGTAACAAGAACAGAACGTTGGTCCTCCAATATTCTGTAAGGTTTGAGCAGGAAATTGAATGCGGTGGGGGTTACATAAAGCTTATGTCTGCATTTGTTAATCAGAAGAAATTCAGTGGGGATACTCCTTACAGTTTAATGTTCGGACCAGATATATGTGGAACGGACACAAAGAAGCTCCACGTTATACTCTCCTACCAAGGCCAGAATTACCCCATCAAGAAGGATTTACAGTGTGAAACTGACAAGTTAACTCATTTCTACACATTTATTCTTAGGCCTGATGCAACTTATAGTGTCCTCGTTGACAATAGAGAAAGGGACTCTGGAAGCATGTATACAGACTGGGATATTCTTCCACCAAGAAAGATCAAAGATGTCAATGCAAAGAAGCCTGCAGACTGGGATATGAGAGAATATATTGATGATCCTAATGACATCAAGCCTGAGGGATATGATTCAATTCCAAAAGAAATTCAAGATCCAACAGCTAAAAAGCCCGCTGACTGGGATGAAGACGAGAGTGGTCTATGGAGAGCTCCAAAGGTACCAAATCCAGCTTACAAAGGACCATGGAGACGCAAGAGAGTCAAGAACCCAAACTATAAAGGCAAATGGAAGACTCCTTGGATTGATAATCCAGAGTTTGAAGATGACCCTGATCTTTATGTGCTTAAGCCAATTAAGTATGTGGGGATTGAGGTTTGGCAGGTAGGACTGCACGACATTATCAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009812 GO:0009987 GO:0010204 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0033554 GO:0034050 GO:0042175 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0080134 GO:0098542 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

340

Amino Acids

39.39

Weight (kDa)

7.05

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calreticulin	PF00262	33 - 269	6.6e-58	Calreticulin family
Calreticulin	PF00262	270 - 332	6.4e-15	Calreticulin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08450 AT1G08450 AT1G08450
fragaria_vesca	FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_6g00230 FvH4_6g00230 FvH4_6g00230
malus_domestica	MD04G1045300.v1.1 MD04G1247000.v1.1 MD12G1263200.v1.1
prunus_persica	Prupe.1G198500_v2.0.a1 Prupe.6G363200_v2.0.a1
pyrus_communis	pycom04g21770 pycom12g24070
rosa_chinensis	RchiOBHm_Chr2g0118841 RchiOBHm_Chr3g0447601
rosa_laevigata	RLG00000018425 RLG00000025985
rosa_multiflora	Rmu_sc0001814.1_g000009 Rmu_sc0003550.1_g000005
rosa_roxburghii	Rroxscaffold_2G00125130 Rroxscaffold_6G00425810
rosa_rugosa	Rorug02G0219200 Rorug02G0603400
rosa_samantha	Rh2AG276300 Rh2BG288100 Rh2DG283200 Rh2DG302300 Rh3AG003600 Rh3BG003100 Rh3CG003400 Rh3DG003400
rosa_wichuraiana	Rw2G021990 Rw3G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	161, 982
Acc65I	GGTACC	1 cut(s)	829
AccB1I	GGYRCC	1 cut(s)	829
AccI	GTMKAC	1 cut(s)	620
AciI	CCGC	2 cut(s)	345, 783
AclI	AACGTT	1 cut(s)	299
AclWI	GGATC	2 cut(s)	704, 758
AcsI	RAATTY	3 cut(s)	225, 392, 756
AfaI	GTAC	1 cut(s)	831
AfiI	CCNNNNNNNGG	2 cut(s)	26, 789
AflII	CTTAAG	2 cut(s)	14, 956
AgsI	TTSAA	6 cut(s)	67, 101, 341, 744, 761, 932
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	6 cut(s)	13, 364, 460, 773, 821, 842
AluI	AGCT	6 cut(s)	13, 364, 460, 773, 821, 842
Alw21I	GWGCWC	1 cut(s)	823
Alw26I	GTCTC	2 cut(s)	201, 853
AlwI	GGATC	2 cut(s)	704, 758
AoxI	GGCC	3 cut(s)	28, 484, 560
ApeKI	GCWGC	2 cut(s)	10, 188
ApoI	RAATTY	3 cut(s)	225, 392, 756
Asp700I	GAANNNNTTC	1 cut(s)	392
Asp718I	GGTACC	1 cut(s)	829
AspS9I	GGNCC	4 cut(s)	28, 304, 428, 851
AsuII	TTCGAA	1 cut(s)	111
AvaII	GGWCC	3 cut(s)	304, 428, 851
AxyI	CCTNAGG	1 cut(s)	729
BaeI	ACNNNNGTAYC	2 cut(s)	263, 296
BanI	GGYRCC	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	823
BarI	GAAGNNNNNNTAC	2 cut(s)	604, 636
BbsI	GAAGAC	2 cut(s)	804, 908
Bbv12I	GWGCWC	1 cut(s)	823
BbvI	GCAGC	2 cut(s)	22, 175
BccI	CCATC	2 cut(s)	110, 506
BceAI	ACGGC	1 cut(s)	114
BciVI	GTATCC	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	201, 853
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	678
BfrI	CTTAAG	2 cut(s)	14, 956
BfuAI	ACCTGC	2 cut(s)	161, 982
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	2 cut(s)	11, 189
BlsI	GCNGC	2 cut(s)	12, 190
Bme18I	GGWCC	3 cut(s)	304, 428, 851
BmgT120I	GGNCC	4 cut(s)	28, 304, 428, 851
BmiI	GGNNCC	2 cut(s)	29, 831
BmrI	ACTGGG	3 cut(s)	637, 694, 799
BmsI	GCATC	2 cut(s)	232, 556
BmuI	ACTGGG	3 cut(s)	637, 694, 799
BpiI	GAAGAC	2 cut(s)	804, 908
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	481, 854, 908
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 789
Bse1I	ACTGG	4 cut(s)	152, 632, 689, 794
Bse21I	CCTNAGG	1 cut(s)	729
BseDI	CCNNGG	3 cut(s)	481, 854, 908
BseGI	GGATG	1 cut(s)	799
BseLI	CCNNNNNNNGG	2 cut(s)	26, 789
BseMII	CTCAG	2 cut(s)	99, 720
BseNI	ACTGG	4 cut(s)	152, 632, 689, 794
BseXI	GCAGC	2 cut(s)	22, 175
BsgI	GTGCAG	1 cut(s)	986
BshFI	GGCC	3 cut(s)	30, 486, 562
BshNI	GGYRCC	1 cut(s)	829
BsiHKAI	GWGCWC	1 cut(s)	823
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	2 cut(s)	26, 789
BsmAI	GTCTC	2 cut(s)	201, 853
BsmBI	CGTCTC	1 cut(s)	853
BsmFI	GGGAC	1 cut(s)	617
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	30, 486, 562
Bso31I	GGTCTC	1 cut(s)	201
Bsp119I	TTCGAA	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	823
Bsp143I	GATC	4 cut(s)	651, 709, 763, 943
Bsp19I	CCATGG	1 cut(s)	854
BspACI	CCGC	2 cut(s)	345, 783
BspANI	GGCC	3 cut(s)	30, 486, 562
BspCNI	CTCAG	2 cut(s)	98, 721
BspLI	GGNNCC	2 cut(s)	29, 831
BspMAI	CTGCAG	1 cut(s)	682
BspMI	ACCTGC	2 cut(s)	161, 982
BspPI	GGATC	2 cut(s)	704, 758
BspQI	GCTCTTC	1 cut(s)	96
BspT104I	TTCGAA	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	829
BspTI	CTTAAG	2 cut(s)	14, 956
BspTNI	GGTCTC	1 cut(s)	201
BsrI	ACTGG	4 cut(s)	152, 632, 689, 794
BssECI	CCNNGG	3 cut(s)	481, 854, 908
BssMI	GATC	4 cut(s)	651, 709, 763, 943
BssNAI	GTATAC	1 cut(s)	621
BssT1I	CCWWGG	3 cut(s)	481, 854, 908
Bst1107I	GTATAC	1 cut(s)	621
Bst4CI	ACNGT	3 cut(s)	51, 416, 516
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	2 cut(s)	14, 956
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	678, 783
BstDEI	CTNAG	3 cut(s)	85, 557, 729
BstDSI	CCRYGG	1 cut(s)	854
BstF5I	GGATG	1 cut(s)	799
BstKTI	GATC	4 cut(s)	654, 712, 766, 946
BstMAI	GTCTC	2 cut(s)	201, 853
BstMBI	GATC	4 cut(s)	651, 709, 763, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 263
BstNSI	RCATGY	1 cut(s)	619
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	2 cut(s)	22, 175
BstV2I	GAAGAC	2 cut(s)	804, 908
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BstZ17I	GTATAC	1 cut(s)	621
Bsu36I	CCTNAGG	1 cut(s)	729
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	3 cut(s)	30, 486, 562
BtgI	CCRYGG	1 cut(s)	854
BtsCI	GGATG	1 cut(s)	799
BtsIMutI	CAGTG	3 cut(s)	47, 403, 521
BveI	ACCTGC	2 cut(s)	161, 982
Cac8I	GCNNGC	2 cut(s)	678, 783
Cfr13I	GGNCC	4 cut(s)	28, 304, 428, 851
CseI	GACGC	1 cut(s)	870
Csp6I	GTAC	1 cut(s)	830
CviAII	CATG	2 cut(s)	616, 855
CviQI	GTAC	1 cut(s)	830
DdeI	CTNAG	3 cut(s)	85, 557, 729
DpnI	GATC	4 cut(s)	653, 711, 765, 945
DpnII	GATC	4 cut(s)	651, 709, 763, 943
DraI	TTTAAA	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	821
Eco130I	CCWWGG	3 cut(s)	481, 854, 908
Eco147I	AGGCCT	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	823
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	3 cut(s)	304, 428, 851
Eco53kI	GAGCTC	1 cut(s)	821
Eco81I	CCTNAGG	1 cut(s)	729
EcoICRI	GAGCTC	1 cut(s)	821
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	225
EcoT14I	CCWWGG	3 cut(s)	481, 854, 908
EcoT38I	GRGCYC	1 cut(s)	823
ErhI	CCWWGG	3 cut(s)	481, 854, 908
Esp3I	CGTCTC	1 cut(s)	853
FaeI	CATG	2 cut(s)	619, 858
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	2 cut(s)	615, 854
FauI	CCCGC	1 cut(s)	790
FblI	GTMKAC	1 cut(s)	620
Fnu4HI	GCNGC	2 cut(s)	11, 189
FokI	GGATG	1 cut(s)	806
FriOI	GRGCYC	1 cut(s)	823
Fsp4HI	GCNGC	2 cut(s)	11, 189
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	2 cut(s)	11, 189
HaeIII	GGCC	3 cut(s)	30, 486, 562
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	1 cut(s)	870
Hin1II	CATG	2 cut(s)	619, 858
HincII	GTYRAC	2 cut(s)	534, 589
HindII	GTYRAC	2 cut(s)	534, 589
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	4 cut(s)	605, 740, 870, 904
HpaI	GTTAAC	1 cut(s)	534
HpaII	CCGG	1 cut(s)	275
Hpy166II	GTNNAC	4 cut(s)	80, 534, 589, 621
Hpy188I	TCNGA	5 cut(s)	88, 145, 231, 387, 428
Hpy188III	TCNNGA	5 cut(s)	502, 609, 761, 874, 923
Hpy8I	GTNNAC	4 cut(s)	80, 534, 589, 621
HpyAV	CCTTC	2 cut(s)	155, 499
HpyCH4III	ACNGT	3 cut(s)	51, 416, 516
HpyCH4IV	ACGT	2 cut(s)	299, 465
HpyCH4V	TGCA	6 cut(s)	266, 374, 569, 668, 680, 1003
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 263
HpyF3I	CTNAG	3 cut(s)	85, 557, 729
HpySE526I	ACGT	2 cut(s)	299, 465
Hsp92II	CATG	2 cut(s)	619, 858
KpnI	GGTACC	1 cut(s)	833
KspAI	GTTAAC	1 cut(s)	534
Kzo9I	GATC	4 cut(s)	651, 709, 763, 943
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	465, 826
Lsp1109I	GCAGC	2 cut(s)	22, 175
LweI	GCATC	2 cut(s)	232, 556
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	2 cut(s)	299, 465
MaeIII	GTNAC	3 cut(s)	173, 284, 353
MalI	GATC	4 cut(s)	653, 711, 765, 945
MboI	GATC	4 cut(s)	651, 709, 763, 943
MboII	GAAGA	8 cut(s)	55, 113, 125, 400, 629, 809, 913, 944
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	1 cut(s)	823
MluCI	AATT	8 cut(s)	225, 336, 392, 490, 744, 756, 963, 1015
MlyI	GAGTC	3 cut(s)	599, 879, 898
MmeI	TCCRAC	2 cut(s)	168, 791
MnlI	CCTC	6 cut(s)	30, 41, 317, 593, 724, 976
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	7 cut(s)	15, 180, 381, 419, 533, 957, 966
MspA1I	CMGCKG	1 cut(s)	785
MspCI	CTTAAG	2 cut(s)	14, 956
MspI	CCGG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	16, 263
NcoI	CCATGG	1 cut(s)	854
NdeII	GATC	4 cut(s)	651, 709, 763, 943
NlaIII	CATG	2 cut(s)	619, 858
NlaIV	GGNNCC	2 cut(s)	29, 831
NspI	RCATGY	1 cut(s)	619
NspV	TTCGAA	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	96
PctI	GAATGC	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	740
PkrI	GCNGC	2 cut(s)	12, 190
PleI	GAGTC	3 cut(s)	599, 878, 898
PpsI	GAGTC	3 cut(s)	599, 878, 898
Psp124BI	GAGCTC	1 cut(s)	823
Psp1406I	AACGTT	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	29, 831
PspPI	GGNCC	4 cut(s)	28, 304, 428, 851
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	1 cut(s)	831
RsaNI	GTAC	1 cut(s)	830
SacI	GAGCTC	1 cut(s)	823
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	7 cut(s)	15, 180, 381, 419, 533, 957, 966
SatI	GCNGC	2 cut(s)	11, 189
Sau3AI	GATC	4 cut(s)	651, 709, 763, 943
Sau96I	GGNCC	4 cut(s)	28, 304, 428, 851
SchI	GAGTC	3 cut(s)	599, 879, 898
SduI	GDGCHC	1 cut(s)	823
SfaNI	GCATC	2 cut(s)	232, 556
SfcI	CTRYAG	1 cut(s)	678
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	3 cut(s)	304, 428, 851
SmlI	CTYRAG	3 cut(s)	14, 21, 956
SmoI	CTYRAG	3 cut(s)	14, 21, 956
Sse9I	AATT	8 cut(s)	225, 336, 392, 490, 744, 756, 963, 1015
SseBI	AGGCCT	1 cut(s)	562
SsiI	CCGC	2 cut(s)	345, 783
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	823
StuI	AGGCCT	1 cut(s)	562
StyI	CCWWGG	3 cut(s)	481, 854, 908
TaaI	ACNGT	3 cut(s)	51, 416, 516
TaiI	ACGT	2 cut(s)	302, 468
TaqI	TCGA	1 cut(s)	111
TasI	AATT	8 cut(s)	225, 336, 392, 490, 744, 756, 963, 1015
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	7 cut(s)	15, 180, 381, 419, 533, 957, 966
Tru9I	TTAA	7 cut(s)	15, 180, 381, 419, 533, 957, 966
TscAI	CASTG	3 cut(s)	54, 403, 521
TseI	GCWGC	2 cut(s)	10, 188
TspDTI	ATGAA	1 cut(s)	810
TspGWI	ACGGA	2 cut(s)	219, 461
TspRI	CASTG	3 cut(s)	54, 403, 521
Vha464I	CTTAAG	2 cut(s)	14, 956
VpaK11BI	GGWCC	3 cut(s)	304, 428, 851
XapI	RAATTY	3 cut(s)	225, 392, 756
XceI	RCATGY	1 cut(s)	619
XmiI	GTMKAC	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.