Rmu_sc0003550.1_g000005

Calreticulin-3-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003550.1
Physical Location & Seq
Reverse (-)
27146 .. 31203
4058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003550.1_g000005.1.cds

Sequence Viewer

Length: 1305 bp
atgtcaactgtgacgagtaaaattctagcaaaccaacctgaggtccggaagaagttaatctctctggaaagaaaaccagcagcttctgcaatttttttagcactggtgaagattgtattcatttttgaagagcgtttcgaagatgggtggaaaagctgttgggttcagtccgactggaaaagaagtgaaggtaaagcaggttactttaaacacgctgctggaaagtggcacggagacccagatgataaaggaattcagacatctagtgatgccaaacattttgccatatctgcaaagataccggagttcagtaacaagaacagaacgttggtcctccaatattctgtaaggtttgagcaggaaattgaatgcggtgggggttacataaagcttatgtctgcatttgttaatcagaagaaattcagtggggatactccttacagtttaatgttcggaccagatatatgtggaacggacacaaagaagctccacgttatactctcctaccaaggccagaattaccccatcaagaaggatttacagtgtgaaactgacaagttaactcatttctacacatttattcttaggcctgatgcaacttatagtgtcctcgttgacaatagagaaagggactctggaagcatgtatacagactgggatattcttccaccaagaaagatcaaagatgtcaatgcaaagaagcctgcagactgggatatgagagaatatattgatgatcctaatgacatcaagcctgagggatatgattcaattccaaaagaaattcaagatccaacagctaaaaagcccgctgactgggatgaagacgagagtggtctatggagagctccaaaggtaccaaatccagcttacaaaggaccatggagacgcaagagagtcaagaacccaaactataaaggcaaatggaagactccttggattgataatccagagtttgaagatgaccctgatctttatgtgcttaagccaattaagtatgtggggattgaggtttggcaggtaaaggctggttcagttttcgacaacattttaatttgtgatgaaccagaatatgcaaaaaaagttgttgaggaagtatttgctaatagagaggcagaaaaggaggcttttgaagaagcagagaaaaggaggaaagcacaagaggaagaggaagctcaaagagcaagagaagaaggtgaaaagaggagacgagaaaggggtcatgatcgacggcatcgggacagatatagagacaaatatagaaggcatcgcgattgggacgattatgatcatgatgagctatga

Protein Analysis

434

Amino Acids

50.97

Weight (kDa)

6.79

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 188, 1009
Acc65I GGTACC 1 cut(s) 856
AccB1I GGYRCC 1 cut(s) 856
AccI GTMKAC 1 cut(s) 647
AccII CGCG 1 cut(s) 1272
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 2 cut(s) 372, 810
AclI AACGTT 1 cut(s) 326
AclWI GGATC 2 cut(s) 731, 785
AcsI RAATTY 4 cut(s) 21, 252, 419, 783
AfaI GTAC 1 cut(s) 858
AfiI CCNNNNNNNGG 2 cut(s) 40, 816
AflII CTTAAG 1 cut(s) 983
AgsI TTSAA 6 cut(s) 128, 368, 771, 788, 959, 1133
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 9 cut(s) 83, 156, 391, 487, 800, 848, 869, 1175, 1300
AluI AGCT 9 cut(s) 83, 156, 391, 487, 800, 848, 869, 1175, 1300
Alw21I GWGCWC 1 cut(s) 850
Alw26I GTCTC 4 cut(s) 228, 880, 1201, 1245
AlwI GGATC 2 cut(s) 731, 785
AlwNI CAGNNNCTG 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 45
AoxI GGCC 2 cut(s) 511, 587
ApeKI GCWGC 2 cut(s) 80, 215
ApoI RAATTY 4 cut(s) 21, 252, 419, 783
Asp700I GAANNNNTTC 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 856
AspS9I GGNCC 4 cut(s) 43, 331, 455, 878
AsuHPI GGTGA 2 cut(s) 118, 1208
AsuII TTCGAA 1 cut(s) 138
AvaII GGWCC 4 cut(s) 43, 331, 455, 878
AxyI CCTNAGG 2 cut(s) 39, 756
BaeI ACNNNNGTAYC 2 cut(s) 290, 323
BanI GGYRCC 1 cut(s) 856
BanII GRGCYC 1 cut(s) 850
BarI GAAGNNNNNNTAC 2 cut(s) 631, 663
BbsI GAAGAC 2 cut(s) 831, 935
Bbv12I GWGCWC 1 cut(s) 850
BbvI GCAGC 2 cut(s) 92, 202
BccI CCATC 2 cut(s) 137, 533
BceAI ACGGC 1 cut(s) 1247
BciVI GTATCC 1 cut(s) 424
BclI TGATCA 1 cut(s) 1288
BcoDI GTCTC 4 cut(s) 228, 880, 1201, 1245
BfaI CTAG 2 cut(s) 26, 264
BfmI CTRYAG 1 cut(s) 705
BfrI CTTAAG 1 cut(s) 983
BfuAI ACCTGC 2 cut(s) 188, 1009
BfuI GTATCC 1 cut(s) 424
BisI GCNGC 2 cut(s) 81, 216
BlsI GCNGC 2 cut(s) 82, 217
Bme18I GGWCC 4 cut(s) 43, 331, 455, 878
BmgT120I GGNCC 4 cut(s) 43, 331, 455, 878
BmiI GGNNCC 1 cut(s) 858
BmrI ACTGGG 3 cut(s) 664, 721, 826
BmsI GCATC 4 cut(s) 259, 583, 1243, 1276
BmuI ACTGGG 3 cut(s) 664, 721, 826
BpiI GAAGAC 2 cut(s) 831, 935
Bpu14I TTCGAA 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 1287
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 508, 881, 935
BsaWI WCCGGW 2 cut(s) 45, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 816
Bse1I ACTGG 5 cut(s) 108, 179, 659, 716, 821
Bse21I CCTNAGG 2 cut(s) 39, 756
Bse8I GATNNNNATC 1 cut(s) 1287
BseAI TCCGGA 1 cut(s) 45
BseDI CCNNGG 3 cut(s) 508, 881, 935
BseGI GGATG 1 cut(s) 826
BseJI GATNNNNATC 1 cut(s) 1287
BseLI CCNNNNNNNGG 2 cut(s) 40, 816
BseMII CTCAG 2 cut(s) 30, 747
BseNI ACTGG 5 cut(s) 108, 179, 659, 716, 821
BseRI GAGGAG 1 cut(s) 1219
BseXI GCAGC 2 cut(s) 92, 202
Bsh1236I CGCG 1 cut(s) 1272
BshFI GGCC 2 cut(s) 513, 589
BshNI GGYRCC 1 cut(s) 856
BsiHKAI GWGCWC 1 cut(s) 850
BsiSI CCGG 2 cut(s) 46, 302
BslFI GGGAC 3 cut(s) 644, 1253, 1292
BslI CCNNNNNNNGG 2 cut(s) 40, 816
BsmAI GTCTC 4 cut(s) 228, 880, 1201, 1245
BsmBI CGTCTC 2 cut(s) 880, 1201
BsmFI GGGAC 3 cut(s) 644, 1253, 1292
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 2 cut(s) 513, 589
Bso31I GGTCTC 1 cut(s) 228
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 850
Bsp13I TCCGGA 1 cut(s) 45
Bsp143I GATC 6 cut(s) 678, 736, 790, 970, 1225, 1288
Bsp19I CCATGG 1 cut(s) 881
Bsp68I TCGCGA 1 cut(s) 1272
BspACI CCGC 2 cut(s) 372, 810
BspANI GGCC 2 cut(s) 513, 589
BspCNI CTCAG 2 cut(s) 31, 748
BspEI TCCGGA 1 cut(s) 45
BspFNI CGCG 1 cut(s) 1272
BspHI TCATGA 2 cut(s) 1222, 1291
BspLI GGNNCC 1 cut(s) 858
BspMAI CTGCAG 1 cut(s) 709
BspMI ACCTGC 2 cut(s) 188, 1009
BspPI GGATC 2 cut(s) 731, 785
BspQI GCTCTTC 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 856
BspTI CTTAAG 1 cut(s) 983
BspTNI GGTCTC 1 cut(s) 228
BsrI ACTGG 5 cut(s) 108, 179, 659, 716, 821
BssECI CCNNGG 3 cut(s) 508, 881, 935
BssMI GATC 6 cut(s) 678, 736, 790, 970, 1225, 1288
BssNAI GTATAC 1 cut(s) 648
BssT1I CCWWGG 3 cut(s) 508, 881, 935
Bst1107I GTATAC 1 cut(s) 648
Bst4CI ACNGT 3 cut(s) 10, 443, 543
Bst6I CTCTTC 2 cut(s) 123, 1161
BstAFI CTTAAG 1 cut(s) 983
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 705, 810
BstDEI CTNAG 3 cut(s) 39, 584, 756
BstDSI CCRYGG 1 cut(s) 881
BstF5I GGATG 1 cut(s) 826
BstFNI CGCG 1 cut(s) 1272
BstKTI GATC 6 cut(s) 681, 739, 793, 973, 1228, 1291
BstMAI GTCTC 4 cut(s) 228, 880, 1201, 1245
BstMBI GATC 6 cut(s) 678, 736, 790, 970, 1225, 1288
BstMWI GCNNNNNNNGC 3 cut(s) 86, 290, 1181
BstNSI RCATGY 1 cut(s) 646
BstSFI CTRYAG 1 cut(s) 705
BstUI CGCG 1 cut(s) 1272
BstV1I GCAGC 2 cut(s) 92, 202
BstV2I GAAGAC 2 cut(s) 831, 935
BstX2I RGATCY 1 cut(s) 790
BstYI RGATCY 1 cut(s) 790
BstZ17I GTATAC 1 cut(s) 648
Bsu36I CCTNAGG 2 cut(s) 39, 756
BsuI GTATCC 1 cut(s) 424
BsuRI GGCC 2 cut(s) 513, 589
BtgI CCRYGG 1 cut(s) 881
BtgZI GCGATG 1 cut(s) 1253
BtsCI GGATG 1 cut(s) 826
BtsIMutI CAGTG 3 cut(s) 101, 430, 548
BtuMI TCGCGA 1 cut(s) 1272
BveI ACCTGC 2 cut(s) 188, 1009
Cac8I GCNNGC 2 cut(s) 705, 810
CaiI CAGNNNCTG 1 cut(s) 86
CciI TCATGA 2 cut(s) 1222, 1291
Cfr13I GGNCC 4 cut(s) 43, 331, 455, 878
CseI GACGC 1 cut(s) 897
Csp6I GTAC 1 cut(s) 857
CviAII CATG 4 cut(s) 643, 882, 1223, 1292
CviQI GTAC 1 cut(s) 857
DdeI CTNAG 3 cut(s) 39, 584, 756
DpnI GATC 6 cut(s) 680, 738, 792, 972, 1227, 1290
DpnII GATC 6 cut(s) 678, 736, 790, 970, 1225, 1288
DraI TTTAAA 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 123, 1161
EarI CTCTTC 2 cut(s) 123, 1161
Ecl136II GAGCTC 1 cut(s) 848
Eco130I CCWWGG 3 cut(s) 508, 881, 935
Eco147I AGGCCT 1 cut(s) 589
Eco24I GRGCYC 1 cut(s) 850
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 4 cut(s) 43, 331, 455, 878
Eco53kI GAGCTC 1 cut(s) 848
Eco81I CCTNAGG 2 cut(s) 39, 756
EcoICRI GAGCTC 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 252
EcoT14I CCWWGG 3 cut(s) 508, 881, 935
EcoT38I GRGCYC 1 cut(s) 850
ErhI CCWWGG 3 cut(s) 508, 881, 935
Esp3I CGTCTC 2 cut(s) 880, 1201
FaeI CATG 4 cut(s) 646, 885, 1226, 1295
FaqI GGGAC 3 cut(s) 644, 1253, 1292
FatI CATG 4 cut(s) 642, 881, 1222, 1291
FauI CCCGC 1 cut(s) 817
FbaI TGATCA 1 cut(s) 1288
FblI GTMKAC 1 cut(s) 647
Fnu4HI GCNGC 2 cut(s) 81, 216
FokI GGATG 1 cut(s) 833
FriOI GRGCYC 1 cut(s) 850
Fsp4HI GCNGC 2 cut(s) 81, 216
FspBI CTAG 2 cut(s) 26, 264
GluI GCNGC 2 cut(s) 81, 216
HaeIII GGCC 2 cut(s) 513, 589
HapII CCGG 2 cut(s) 46, 302
HgaI GACGC 1 cut(s) 897
Hin1II CATG 4 cut(s) 646, 885, 1226, 1295
HincII GTYRAC 3 cut(s) 6, 561, 616
HindII GTYRAC 3 cut(s) 6, 561, 616
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 4 cut(s) 632, 767, 897, 931
HpaI GTTAAC 1 cut(s) 561
HpaII CCGG 2 cut(s) 46, 302
HphI GGTGA 2 cut(s) 118, 1208
Hpy166II GTNNAC 4 cut(s) 6, 561, 616, 648
Hpy188I TCNGA 4 cut(s) 172, 258, 414, 455
Hpy8I GTNNAC 4 cut(s) 6, 561, 616, 648
Hpy99I CGWCG 1 cut(s) 1233
HpyAV CCTTC 4 cut(s) 182, 526, 1187, 1257
HpyCH4III ACNGT 3 cut(s) 10, 443, 543
HpyCH4IV ACGT 2 cut(s) 326, 492
HpyCH4V TGCA 7 cut(s) 89, 293, 401, 596, 695, 707, 1076
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 290, 1181
HpyF3I CTNAG 3 cut(s) 39, 584, 756
HpySE526I ACGT 2 cut(s) 326, 492
Hsp92II CATG 4 cut(s) 646, 885, 1226, 1295
Kpn2I TCCGGA 1 cut(s) 45
KpnI GGTACC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 1288
KspAI GTTAAC 1 cut(s) 561
Kzo9I GATC 6 cut(s) 678, 736, 790, 970, 1225, 1288
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 492, 853
Lsp1109I GCAGC 2 cut(s) 92, 202
LweI GCATC 4 cut(s) 259, 583, 1243, 1276
MaeI CTAG 2 cut(s) 26, 264
MaeII ACGT 2 cut(s) 326, 492
MaeIII GTNAC 4 cut(s) 10, 200, 311, 380
MalI GATC 6 cut(s) 680, 738, 792, 972, 1227, 1290
MboI GATC 6 cut(s) 678, 736, 790, 970, 1225, 1288
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 1 cut(s) 850
MlyI GAGTC 3 cut(s) 626, 906, 925
MmeI TCCRAC 2 cut(s) 195, 818
MroI TCCGGA 1 cut(s) 45
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 8 cut(s) 56, 207, 408, 446, 560, 984, 993, 1052
MspA1I CMGCKG 1 cut(s) 812
MspCI CTTAAG 1 cut(s) 983
MspI CCGG 2 cut(s) 46, 302
Mva1269I GAATGC 1 cut(s) 374
MvnI CGCG 1 cut(s) 1272
MwoI GCNNNNNNNGC 3 cut(s) 86, 290, 1181
NcoI CCATGG 1 cut(s) 881
NdeII GATC 6 cut(s) 678, 736, 790, 970, 1225, 1288
NlaIII CATG 4 cut(s) 646, 885, 1226, 1295
NlaIV GGNNCC 1 cut(s) 858
NmuCI GTSAC 1 cut(s) 10
NruI TCGCGA 1 cut(s) 1272
NspI RCATGY 1 cut(s) 646
NspV TTCGAA 1 cut(s) 138
PagI TCATGA 2 cut(s) 1222, 1291
PceI AGGCCT 1 cut(s) 589
PciSI GCTCTTC 1 cut(s) 123
PctI GAATGC 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 1 cut(s) 767
PkrI GCNGC 2 cut(s) 82, 217
PleI GAGTC 3 cut(s) 626, 905, 925
PpsI GAGTC 3 cut(s) 626, 905, 925
Psp124BI GAGCTC 1 cut(s) 850
Psp1406I AACGTT 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 858
PspPI GGNCC 4 cut(s) 43, 331, 455, 878
PstI CTGCAG 1 cut(s) 709
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 790
RruI TCGCGA 1 cut(s) 1272
RsaI GTAC 1 cut(s) 858
RsaNI GTAC 1 cut(s) 857
SacI GAGCTC 1 cut(s) 850
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 8 cut(s) 56, 207, 408, 446, 560, 984, 993, 1052
SatI GCNGC 2 cut(s) 81, 216
Sau3AI GATC 6 cut(s) 678, 736, 790, 970, 1225, 1288
Sau96I GGNCC 4 cut(s) 43, 331, 455, 878
SchI GAGTC 3 cut(s) 626, 906, 925
SduI GDGCHC 1 cut(s) 850
SfaNI GCATC 4 cut(s) 259, 583, 1243, 1276
SfcI CTRYAG 1 cut(s) 705
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 4 cut(s) 43, 331, 455, 878
SmlI CTYRAG 1 cut(s) 983
SmoI CTYRAG 1 cut(s) 983
SseBI AGGCCT 1 cut(s) 589
SsiI CCGC 2 cut(s) 372, 810
SspI AATATT 1 cut(s) 341
SspMI CTAG 2 cut(s) 26, 264
SstI GAGCTC 1 cut(s) 850
StuI AGGCCT 1 cut(s) 589
StyI CCWWGG 3 cut(s) 508, 881, 935
TaaI ACNGT 3 cut(s) 10, 443, 543
TaiI ACGT 2 cut(s) 329, 495
TaqI TCGA 3 cut(s) 138, 1041, 1228
TfiI GAWTC 1 cut(s) 767
Tru1I TTAA 8 cut(s) 56, 207, 408, 446, 560, 984, 993, 1052
Tru9I TTAA 8 cut(s) 56, 207, 408, 446, 560, 984, 993, 1052
TscAI CASTG 3 cut(s) 108, 430, 548
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 2 cut(s) 80, 215
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 3 cut(s) 109, 837, 1077
TspGWI ACGGA 2 cut(s) 246, 488
TspRI CASTG 3 cut(s) 108, 430, 548
Vha464I CTTAAG 1 cut(s) 983
VpaK11BI GGWCC 4 cut(s) 43, 331, 455, 878
XapI RAATTY 4 cut(s) 21, 252, 419, 783
XceI RCATGY 1 cut(s) 646
XmiI GTMKAC 1 cut(s) 647
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 2 cut(s) 26, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.