Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002902

Physical Location & Seq

Genomic Coordinates Reverse (-)

59709127 .. 59715467

Gene Structure 6341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGAGAGCTGCGAAAGATGAAGCTTCTCGAATCTCTTCTTCCGCTTCTTCTTCTTCTGCTTCCGCCTCTATGCCTCCACTTCCGTCTCGCCGTCTCCGAAATCTTCTTCGAAGAGCGATTTGAAGATGGGTGGAAGAGCCGGTGGGTGTTGTCGGACTGGAAAAGGGCCGAAGGAAAAGCAGGAACGTTTAAGTACACTGCTGGGAAATGGTCTGGAGATCCTGATGATAAAGGCATTCAGACATATAATGATGCCAGGCATTATGCCATATCTGCAAAAATTCCTGAGTTCAGCAACAAAAACAGAACTCTAGTGGTCCAGTATTCGATTAAATTTGAGCAAGACATTGAATGTGGTGGCGGTTACATCAAGCTTCTATCTGGCTATGTGAATCAGAAAAAGTTCGGCGGTGATACCCCATACAGTTTTCACCAAAAAAGAAGTCATCTTGAAGTTGTTTTATGTTTGCCTTTGCCAGTTTGCCTATATGAAGTACTTGGTTCTATTTGGCAAGCTTGCATGCCGTTGTCCTTGTTGATAACCGAGAGAGATTCTGGAAGCATGTATTCTGATTGGGATATCCTTCCTCCACAAAAAATCAAGGATGTCAATGCAAGAAAGCCATCAGACTGGGATGACAGAGAGTACATTGACGACCTTAAAGCCGTCAAACCAGAGCCCGAGGACTGGGATGAGGAAGAGAACGGATTATGGAGACCACCAAAGATCCCAAATCCAGCTTATAAGGGCCCATGGAAGCGCAAGAAAATCAAGAACCCCAACTACAAGGGGAAGTGGAAGACTCCGTGGATTGATAACCCAGAGTTTGAGGATGATCCTGACCTTTATGTGCTGAAGCCAATAAAATATGTGGGCAGTCGCATTGAGAAATCGGTTGAAGAACTCAAAAATATTGTTGTTGATACTGTCCCTACAAAAGTTGTGGAAGAGCTGAGGGGATTAAAAGAATTTTTTGAAGTCATTAAAGGTGGGCGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009812 GO:0009987 GO:0010204 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0033554 GO:0034050 GO:0042175 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0080134 GO:0098542 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

334

Amino Acids

38.88

Weight (kDa)

7.55

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calreticulin	PF00262	37 - 143	1.6e-17	Calreticulin family
Calreticulin	PF00262	194 - 235	8.2e-08	Calreticulin family
Calreticulin	PF00262	237 - 293	2.8e-12	Calreticulin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08450 AT1G08450 AT1G08450
fragaria_vesca	FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_6g00230 FvH4_6g00230 FvH4_6g00230
malus_domestica	MD04G1045300.v1.1 MD04G1247000.v1.1 MD12G1263200.v1.1
prunus_persica	Prupe.1G198500_v2.0.a1 Prupe.6G363200_v2.0.a1
pyrus_communis	pycom04g21770 pycom12g24070
rosa_chinensis	RchiOBHm_Chr2g0118841 RchiOBHm_Chr3g0447601
rosa_laevigata	RLG00000018425 RLG00000025985
rosa_multiflora	Rmu_sc0001814.1_g000009 Rmu_sc0003550.1_g000005
rosa_roxburghii	Rroxscaffold_2G00125130 Rroxscaffold_6G00425810
rosa_rugosa	Rorug02G0219200 Rorug02G0603400
rosa_samantha	Rh2AG276300 Rh2BG288100 Rh2DG283200 Rh2DG302300 Rh3AG003600 Rh3BG003100 Rh3CG003400 Rh3DG003400
rosa_wichuraiana	Rw2G021990 Rw3G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	747
AciI	CCGC	4 cut(s)	44, 65, 363, 411
AclI	AACGTT	1 cut(s)	188
AclWI	GGATC	3 cut(s)	215, 724, 833
AcsI	RAATTY	3 cut(s)	282, 335, 971
AcuI	CTGAAG	1 cut(s)	878
AcyI	GRCGYC	1 cut(s)	997
AfaI	GTAC	3 cut(s)	197, 498, 650
AfiI	CCNNNNNNNGG	1 cut(s)	690
AgsI	TTSAA	5 cut(s)	125, 353, 455, 902, 980
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	6 cut(s)	10, 25, 376, 518, 743, 955
AluI	AGCT	6 cut(s)	10, 25, 376, 518, 743, 955
Alw26I	GTCTC	3 cut(s)	92, 100, 712
AlwI	GGATC	3 cut(s)	215, 724, 833
Ama87I	CYCGRG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	168, 751
ApaI	GGGCCC	1 cut(s)	755
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	3 cut(s)	282, 335, 971
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
Asp700I	GAANNNNTTC	2 cut(s)	36, 404
AspLEI	GCGC	1 cut(s)	765
AspS9I	GGNCC	4 cut(s)	168, 319, 751, 752
AsuHPI	GGTGA	2 cut(s)	425, 425
AsuII	TTCGAA	1 cut(s)	111
AvaI	CYCGRG	1 cut(s)	683
AvaII	GGWCC	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	755
BanII	GRGCYC	2 cut(s)	684, 755
BbsI	GAAGAC	1 cut(s)	809
BbvCI	CCTCAGC	1 cut(s)	956
BccI	CCATC	2 cut(s)	122, 634
BceAI	ACGGC	3 cut(s)	77, 511, 653
BciT130I	CCWGG	1 cut(s)	259
BcoDI	GTCTC	3 cut(s)	92, 100, 712
BfaI	CTAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
BmcAI	AGTACT	1 cut(s)	498
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	683
BmgT120I	GGNCC	4 cut(s)	168, 319, 751, 752
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	1 cut(s)	259
BmrI	ACTGGG	2 cut(s)	643, 700
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	2 cut(s)	643, 700
BpiI	GAAGAC	1 cut(s)	809
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	956
Bpu14I	TTCGAA	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	997
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	3 cut(s)	684, 755, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	690
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	5 cut(s)	164, 322, 479, 638, 695
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	3 cut(s)	684, 755, 809
BseGI	GGATG	4 cut(s)	613, 643, 700, 841
BseLI	CCNNNNNNNGG	1 cut(s)	690
BseMII	CTCAG	2 cut(s)	279, 947
BseNI	ACTGG	5 cut(s)	164, 322, 479, 638, 695
BseSI	GKGCMC	1 cut(s)	755
BseYI	CCCAGC	1 cut(s)	203
BshFI	GGCC	2 cut(s)	170, 753
BsiHKCI	CYCGRG	1 cut(s)	683
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	917
BslI	CCNNNNNNNGG	1 cut(s)	690
BsmAI	GTCTC	3 cut(s)	92, 100, 712
BsmBI	CGTCTC	2 cut(s)	92, 100
BsmFI	GGGAC	1 cut(s)	917
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	170, 753
Bso31I	GGTCTC	1 cut(s)	712
BsoBI	CYCGRG	1 cut(s)	683
Bsp119I	TTCGAA	1 cut(s)	111
Bsp120I	GGGCCC	1 cut(s)	751
Bsp1286I	GDGCHC	2 cut(s)	684, 755
Bsp143I	GATC	3 cut(s)	220, 729, 838
Bsp19I	CCATGG	1 cut(s)	755
BspACI	CCGC	4 cut(s)	44, 65, 363, 411
BspANI	GGCC	2 cut(s)	170, 753
BspCNI	CTCAG	2 cut(s)	280, 948
BspLI	GGNNCC	1 cut(s)	753
BspPI	GGATC	3 cut(s)	215, 724, 833
BspQI	GCTCTTC	3 cut(s)	108, 131, 945
BspT104I	TTCGAA	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	712
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	5 cut(s)	164, 322, 479, 638, 695
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	3 cut(s)	684, 755, 809
BssMI	GATC	3 cut(s)	220, 729, 838
BssNI	GRCGYC	1 cut(s)	997
BssT1I	CCWWGG	1 cut(s)	755
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	2 cut(s)	428, 931
Bst6I	CTCTTC	5 cut(s)	42, 108, 131, 696, 945
BstACI	GRCGYC	1 cut(s)	997
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	516, 520, 524
BstDEI	CTNAG	2 cut(s)	288, 956
BstDSI	CCRYGG	2 cut(s)	755, 809
BstF5I	GGATG	4 cut(s)	613, 643, 700, 841
BstHHI	GCGC	1 cut(s)	765
BstKTI	GATC	3 cut(s)	223, 732, 841
BstMAI	GTCTC	3 cut(s)	92, 100, 712
BstMBI	GATC	3 cut(s)	220, 729, 838
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	2 cut(s)	526, 568
BstSCI	CCNGG	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	755
BstV2I	GAAGAC	1 cut(s)	809
BstX2I	RGATCY	2 cut(s)	220, 729
BstXI	CCANNNNNNTGG	1 cut(s)	633
BstYI	RGATCY	2 cut(s)	220, 729
BsuRI	GGCC	2 cut(s)	170, 753
BtgI	CCRYGG	2 cut(s)	755, 809
BtsCI	GGATG	4 cut(s)	613, 643, 700, 841
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	3 cut(s)	516, 520, 524
CfoI	GCGC	1 cut(s)	765
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	4 cut(s)	168, 319, 751, 752
CseI	GACGC	1 cut(s)	986
Csp6I	GTAC	3 cut(s)	196, 497, 649
CspCI	CAANNNNNGTGG	2 cut(s)	927, 962
CviAII	CATG	3 cut(s)	523, 565, 756
CviQI	GTAC	3 cut(s)	196, 497, 649
DdeI	CTNAG	2 cut(s)	288, 956
DpnI	GATC	3 cut(s)	222, 731, 840
DpnII	GATC	3 cut(s)	220, 729, 838
Eam1104I	CTCTTC	5 cut(s)	42, 108, 131, 696, 945
EarI	CTCTTC	5 cut(s)	42, 108, 131, 696, 945
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	755
Eco24I	GRGCYC	2 cut(s)	684, 755
Eco31I	GGTCTC	1 cut(s)	712
Eco32I	GATATC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	878
Eco88I	CYCGRG	1 cut(s)	683
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRII	CCWGG	1 cut(s)	257
EcoRV	GATATC	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	755
EcoT38I	GRGCYC	2 cut(s)	684, 755
ErhI	CCWWGG	1 cut(s)	755
Esp3I	CGTCTC	2 cut(s)	92, 100
FaeI	CATG	3 cut(s)	526, 568, 759
FaqI	GGGAC	1 cut(s)	917
FatI	CATG	3 cut(s)	522, 564, 755
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	4 cut(s)	620, 650, 707, 848
FriOI	GRGCYC	2 cut(s)	684, 755
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	764
GluI	GCNGC	1 cut(s)	11
GsaI	CCCAGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	170, 753
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	1 cut(s)	986
HhaI	GCGC	1 cut(s)	765
Hin1I	GRCGYC	1 cut(s)	997
Hin1II	CATG	3 cut(s)	526, 568, 759
Hin6I	GCGC	1 cut(s)	763
HinP1I	GCGC	1 cut(s)	763
HindIII	AAGCTT	3 cut(s)	23, 374, 516
HinfI	GANTC	4 cut(s)	32, 394, 554, 805
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	2 cut(s)	425, 425
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	6 cut(s)	100, 157, 243, 399, 574, 631
Hpy188III	TCNNGA	8 cut(s)	29, 216, 224, 287, 452, 558, 775, 842
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	2 cut(s)	167, 596
HpyCH4III	ACNGT	2 cut(s)	428, 931
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	3 cut(s)	278, 522, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	288, 956
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	997
Hsp92II	CATG	3 cut(s)	526, 568, 759
HspAI	GCGC	1 cut(s)	763
Kzo9I	GATC	3 cut(s)	220, 729, 838
LguI	GCTCTTC	3 cut(s)	108, 131, 945
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	222, 731, 840
MboI	GATC	3 cut(s)	220, 729, 838
MflI	RGATCY	2 cut(s)	220, 729
MhlI	GDGCHC	2 cut(s)	684, 755
MluCI	AATT	3 cut(s)	282, 335, 971
MlyI	GAGTC	1 cut(s)	799
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	7 cut(s)	78, 86, 600, 679, 691, 826, 951
MroXI	GAANNNNTTC	2 cut(s)	36, 404
MseI	TTAA	5 cut(s)	192, 333, 663, 965, 987
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	259
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	755
NdeII	GATC	3 cut(s)	220, 729, 838
NlaIII	CATG	3 cut(s)	526, 568, 759
NlaIV	GGNNCC	1 cut(s)	753
NspI	RCATGY	2 cut(s)	526, 568
NspV	TTCGAA	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	526
PciSI	GCTCTTC	3 cut(s)	108, 131, 945
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	2 cut(s)	36, 404
PfeI	GAWTC	3 cut(s)	32, 394, 554
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	799
PpsI	GAGTC	1 cut(s)	799
PsiI	TTATAA	1 cut(s)	747
Psp1406I	AACGTT	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	753
PspOMI	GGGCCC	1 cut(s)	751
PspPI	GGNCC	4 cut(s)	168, 319, 751, 752
PsrI	GAACNNNNNNTAC	2 cut(s)	770, 802
PsuI	RGATCY	2 cut(s)	220, 729
RsaI	GTAC	3 cut(s)	197, 498, 650
RsaNI	GTAC	3 cut(s)	196, 497, 649
SapI	GCTCTTC	3 cut(s)	108, 131, 945
SaqAI	TTAA	5 cut(s)	192, 333, 663, 965, 987
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	3 cut(s)	220, 729, 838
Sau96I	GGNCC	4 cut(s)	168, 319, 751, 752
ScaI	AGTACT	1 cut(s)	498
SchI	GAGTC	1 cut(s)	799
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	2 cut(s)	684, 755
SfaNI	GCATC	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	1 cut(s)	319
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	3 cut(s)	282, 335, 971
SsiI	CCGC	4 cut(s)	44, 65, 363, 411
SspI	AATATT	1 cut(s)	916
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	755
TaaI	ACNGT	2 cut(s)	428, 931
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	3 cut(s)	30, 111, 329
TasI	AATT	3 cut(s)	282, 335, 971
TatI	WGTACW	3 cut(s)	195, 496, 648
TfiI	GAWTC	3 cut(s)	32, 394, 554
Tru1I	TTAA	5 cut(s)	192, 333, 663, 965, 987
Tru9I	TTAA	5 cut(s)	192, 333, 663, 965, 987
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	35, 507
TspGWI	ACGGA	3 cut(s)	74, 723, 798
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	3 cut(s)	282, 335, 971
XceI	RCATGY	2 cut(s)	526, 568
XmnI	GAANNNNTTC	2 cut(s)	36, 404
XspI	CTAG	1 cut(s)	314
ZrmI	AGTACT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.