Rw3G000250

Calreticulin-3-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
287810 .. 291850
4041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000250.1

Sequence Viewer

Length: 1278 bp
ATGGCAAAGCAGCCTAAGCTTCAATTGTTGCAACTTGTGCTCATAACACTGTTCCCACTTTTCTTCAACTTCCATTGTTCACGCTCAGAAATCATTTTTGAAGAGCGTTTCGAAGATGGGTGGAAAAGCCGTTGGGTTCAGTCCGACTGGAAAAGAAGCGAAGGTAAAGCAGGTTACTTTAAACACGCTGCTGGAAAGTGGCACGGAGACCCAGATGATAAAGGAATTCAGACATCTAGTGATGCCAAACATTTTGCCATATCTGCAAAGATACCGGAGTTCAGTAACAAGAACAGAACGTTGGTCCTCCAATATTCTGTAAGGTTTGAGCAGGAAATTGAATGCGGTGGGGGGTACATAAAGCTTATGTCTGCATTTGTTAATCAGAAGAAATTCAGTGGGGATACTCCTTACAGTTTAATGTTCGGACCAGATATATGTGGAACGGACACAAAGAAGCTCCACGTTATACTCTCCTACCAAGGCCAGAATTACCCCATCAAGAAGGATTTACAGTGTGAAACTGACAAGTTAACTCATTTCTACACATTTATTCTTAGGCCTGATGCAACTTATAGTGTCCTCGTTGACAATAGAGAAAGGGACTCTGGAAGCATGTATACAGACTGGGATATTCTTCCACCAAGAAAGATCAAAGATGTCAATGCAAAGAAGCCTGCAGACTGGGATATGAGAGAATATATTGATGATCCTAATGACATCAAGCCTGAGGGATATGATTCAATTCCAAAAGAAATTCAAGATCCAACAGCTAAAAAGCCCGCTGACTGGGATGAAGACGAGAGTGGTCTATGGAGAGCTCCAAAGGTACCAAATCCAGCTTACAAAGGACCATGGAGACGCAAGAGAGTCAAGAACCCAAACTATAAAGGCAAATGGAAGACTCCTTGGATTGATAATCCAGAGTTTGAAGATGACCCTGATCTTTATGTGCTTAAGCCAATTAAGTATGTGGGGATTGAGGTTTGGCAGGTAAAGGCTGGTTCAGTTTTCGACAACATTTTAATTTGTGATGAACCAGAATATGCAAAAAAAGTTGTTGAGGAAGTATTTGCTAATAGAGAGGCAGAAAAGGAGGCTTTTGAAGAAGCAGAGAAAAGGAGGAAAGCACAAGAGGAAGAGGAAGCTCAAAGAGCAAGAGAAGAAGGTGAAAAGAGGAGACGAGAAAGGGGTCATGATCGACGGCATCGGGACAGATATAGAGACAAATATAGAAGGCATCGCGATTGGGATGATTATGATCATGATGAGCTATGA

Protein Analysis

425

Amino Acids

50.29

Weight (kDa)

6.42

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 33 - 269 1.3e-57 Calreticulin family
Calreticulin PF00262 270 - 343 3.4e-19 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 161, 982
Acc65I GGTACC 1 cut(s) 829
AccB1I GGYRCC 1 cut(s) 829
AccI GTMKAC 1 cut(s) 620
AccII CGCG 1 cut(s) 1245
AciI CCGC 2 cut(s) 345, 783
AclI AACGTT 1 cut(s) 299
AclWI GGATC 2 cut(s) 704, 758
AcsI RAATTY 3 cut(s) 225, 392, 756
AfaI GTAC 2 cut(s) 356, 831
AfiI CCNNNNNNNGG 1 cut(s) 789
AflII CTTAAG 1 cut(s) 956
AgsI TTSAA 8 cut(s) 23, 67, 101, 341, 744, 761, 932, 1106
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 8 cut(s) 19, 364, 460, 773, 821, 842, 1148, 1273
AluI AGCT 8 cut(s) 19, 364, 460, 773, 821, 842, 1148, 1273
Alw21I GWGCWC 2 cut(s) 42, 823
Alw26I GTCTC 4 cut(s) 201, 853, 1174, 1218
AlwI GGATC 2 cut(s) 704, 758
AoxI GGCC 2 cut(s) 484, 560
ApeKI GCWGC 2 cut(s) 10, 188
ApoI RAATTY 3 cut(s) 225, 392, 756
Asp700I GAANNNNTTC 1 cut(s) 392
Asp718I GGTACC 1 cut(s) 829
AspS9I GGNCC 3 cut(s) 304, 428, 851
AsuHPI GGTGA 1 cut(s) 1181
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 3 cut(s) 304, 428, 851
AxyI CCTNAGG 1 cut(s) 729
BaeI ACNNNNGTAYC 2 cut(s) 263, 296
BanI GGYRCC 1 cut(s) 829
BanII GRGCYC 1 cut(s) 823
BarI GAAGNNNNNNTAC 2 cut(s) 604, 636
BbsI GAAGAC 2 cut(s) 804, 908
Bbv12I GWGCWC 2 cut(s) 42, 823
BbvI GCAGC 2 cut(s) 22, 175
BccI CCATC 2 cut(s) 110, 506
BceAI ACGGC 2 cut(s) 114, 1220
BciVI GTATCC 1 cut(s) 397
BclI TGATCA 1 cut(s) 1261
BcoDI GTCTC 4 cut(s) 201, 853, 1174, 1218
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 678
BfrI CTTAAG 1 cut(s) 956
BfuAI ACCTGC 2 cut(s) 161, 982
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 2 cut(s) 11, 189
BlsI GCNGC 2 cut(s) 12, 190
Bme18I GGWCC 3 cut(s) 304, 428, 851
BmgT120I GGNCC 3 cut(s) 304, 428, 851
BmiI GGNNCC 1 cut(s) 831
BmrI ACTGGG 3 cut(s) 637, 694, 799
BmsI GCATC 4 cut(s) 232, 556, 1216, 1249
BmuI ACTGGG 3 cut(s) 637, 694, 799
BpiI GAAGAC 2 cut(s) 804, 908
Bpu10I CCTNAGC 1 cut(s) 15
Bpu14I TTCGAA 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 1260
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 481, 854, 908
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 789
Bse1I ACTGG 4 cut(s) 152, 632, 689, 794
Bse21I CCTNAGG 1 cut(s) 729
Bse8I GATNNNNATC 1 cut(s) 1260
BseDI CCNNGG 3 cut(s) 481, 854, 908
BseGI GGATG 2 cut(s) 799, 1258
BseJI GATNNNNATC 1 cut(s) 1260
BseLI CCNNNNNNNGG 1 cut(s) 789
BseMII CTCAG 2 cut(s) 99, 720
BseNI ACTGG 4 cut(s) 152, 632, 689, 794
BseRI GAGGAG 1 cut(s) 1192
BseXI GCAGC 2 cut(s) 22, 175
Bsh1236I CGCG 1 cut(s) 1245
BshFI GGCC 2 cut(s) 486, 562
BshNI GGYRCC 1 cut(s) 829
BsiHKAI GWGCWC 2 cut(s) 42, 823
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 2 cut(s) 617, 1226
BslI CCNNNNNNNGG 1 cut(s) 789
BsmAI GTCTC 4 cut(s) 201, 853, 1174, 1218
BsmBI CGTCTC 2 cut(s) 853, 1174
BsmFI GGGAC 2 cut(s) 617, 1226
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 2 cut(s) 486, 562
Bso31I GGTCTC 1 cut(s) 201
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 42, 823
Bsp143I GATC 6 cut(s) 651, 709, 763, 943, 1198, 1261
Bsp19I CCATGG 1 cut(s) 854
Bsp68I TCGCGA 1 cut(s) 1245
BspACI CCGC 2 cut(s) 345, 783
BspANI GGCC 2 cut(s) 486, 562
BspCNI CTCAG 2 cut(s) 98, 721
BspFNI CGCG 1 cut(s) 1245
BspHI TCATGA 2 cut(s) 1195, 1264
BspLI GGNNCC 1 cut(s) 831
BspMAI CTGCAG 1 cut(s) 682
BspMI ACCTGC 2 cut(s) 161, 982
BspPI GGATC 2 cut(s) 704, 758
BspQI GCTCTTC 1 cut(s) 96
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 829
BspTI CTTAAG 1 cut(s) 956
BspTNI GGTCTC 1 cut(s) 201
BsrI ACTGG 4 cut(s) 152, 632, 689, 794
BssECI CCNNGG 3 cut(s) 481, 854, 908
BssMI GATC 6 cut(s) 651, 709, 763, 943, 1198, 1261
BssNAI GTATAC 1 cut(s) 621
BssT1I CCWWGG 3 cut(s) 481, 854, 908
Bst1107I GTATAC 1 cut(s) 621
Bst4CI ACNGT 3 cut(s) 51, 416, 516
Bst6I CTCTTC 2 cut(s) 96, 1134
BstAFI CTTAAG 1 cut(s) 956
BstAPI GCANNNNNTGC 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 678, 783
BstDEI CTNAG 4 cut(s) 15, 85, 557, 729
BstDSI CCRYGG 1 cut(s) 854
BstF5I GGATG 2 cut(s) 799, 1258
BstFNI CGCG 1 cut(s) 1245
BstKTI GATC 6 cut(s) 654, 712, 766, 946, 1201, 1264
BstMAI GTCTC 4 cut(s) 201, 853, 1174, 1218
BstMBI GATC 6 cut(s) 651, 709, 763, 943, 1198, 1261
BstMWI GCNNNNNNNGC 4 cut(s) 16, 37, 263, 1154
BstNSI RCATGY 1 cut(s) 619
BstSFI CTRYAG 1 cut(s) 678
BstUI CGCG 1 cut(s) 1245
BstV1I GCAGC 2 cut(s) 22, 175
BstV2I GAAGAC 2 cut(s) 804, 908
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
BstZ17I GTATAC 1 cut(s) 621
Bsu36I CCTNAGG 1 cut(s) 729
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 2 cut(s) 486, 562
BtgI CCRYGG 1 cut(s) 854
BtgZI GCGATG 1 cut(s) 1226
BtsCI GGATG 2 cut(s) 799, 1258
BtsIMutI CAGTG 3 cut(s) 47, 403, 521
BtuMI TCGCGA 1 cut(s) 1245
BveI ACCTGC 2 cut(s) 161, 982
Cac8I GCNNGC 2 cut(s) 678, 783
CciI TCATGA 2 cut(s) 1195, 1264
Cfr13I GGNCC 3 cut(s) 304, 428, 851
CseI GACGC 1 cut(s) 870
Csp6I GTAC 2 cut(s) 355, 830
CviAII CATG 4 cut(s) 616, 855, 1196, 1265
CviQI GTAC 2 cut(s) 355, 830
DdeI CTNAG 4 cut(s) 15, 85, 557, 729
DpnI GATC 6 cut(s) 653, 711, 765, 945, 1200, 1263
DpnII GATC 6 cut(s) 651, 709, 763, 943, 1198, 1261
DraI TTTAAA 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 96, 1134
EarI CTCTTC 2 cut(s) 96, 1134
Ecl136II GAGCTC 1 cut(s) 821
Eco130I CCWWGG 3 cut(s) 481, 854, 908
Eco147I AGGCCT 1 cut(s) 562
Eco24I GRGCYC 1 cut(s) 823
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 3 cut(s) 304, 428, 851
Eco53kI GAGCTC 1 cut(s) 821
Eco81I CCTNAGG 1 cut(s) 729
EcoICRI GAGCTC 1 cut(s) 821
EcoRI GAATTC 1 cut(s) 225
EcoT14I CCWWGG 3 cut(s) 481, 854, 908
EcoT38I GRGCYC 1 cut(s) 823
ErhI CCWWGG 3 cut(s) 481, 854, 908
Esp3I CGTCTC 2 cut(s) 853, 1174
FaeI CATG 4 cut(s) 619, 858, 1199, 1268
FaqI GGGAC 2 cut(s) 617, 1226
FatI CATG 4 cut(s) 615, 854, 1195, 1264
FauI CCCGC 1 cut(s) 790
FbaI TGATCA 1 cut(s) 1261
FblI GTMKAC 1 cut(s) 620
Fnu4HI GCNGC 2 cut(s) 11, 189
FokI GGATG 2 cut(s) 806, 1265
FriOI GRGCYC 1 cut(s) 823
Fsp4HI GCNGC 2 cut(s) 11, 189
FspBI CTAG 1 cut(s) 237
GluI GCNGC 2 cut(s) 11, 189
HaeIII GGCC 2 cut(s) 486, 562
HapII CCGG 1 cut(s) 275
HgaI GACGC 1 cut(s) 870
Hin1II CATG 4 cut(s) 619, 858, 1199, 1268
HincII GTYRAC 2 cut(s) 534, 589
HindII GTYRAC 2 cut(s) 534, 589
HindIII AAGCTT 2 cut(s) 17, 362
HinfI GANTC 4 cut(s) 605, 740, 870, 904
HpaI GTTAAC 1 cut(s) 534
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 1181
Hpy166II GTNNAC 4 cut(s) 80, 534, 589, 621
Hpy188I TCNGA 5 cut(s) 88, 145, 231, 387, 428
Hpy188III TCNNGA 9 cut(s) 502, 609, 761, 874, 923, 1196, 1211, 1244, 1265
Hpy8I GTNNAC 4 cut(s) 80, 534, 589, 621
Hpy99I CGWCG 1 cut(s) 1206
HpyAV CCTTC 4 cut(s) 155, 499, 1160, 1230
HpyCH4III ACNGT 3 cut(s) 51, 416, 516
HpyCH4IV ACGT 2 cut(s) 299, 465
HpyCH4V TGCA 7 cut(s) 31, 266, 374, 569, 668, 680, 1049
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 37, 263, 1154
HpyF3I CTNAG 4 cut(s) 15, 85, 557, 729
HpySE526I ACGT 2 cut(s) 299, 465
Hsp92II CATG 4 cut(s) 619, 858, 1199, 1268
KpnI GGTACC 1 cut(s) 833
Ksp22I TGATCA 1 cut(s) 1261
KspAI GTTAAC 1 cut(s) 534
Kzo9I GATC 6 cut(s) 651, 709, 763, 943, 1198, 1261
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 2 cut(s) 465, 826
Lsp1109I GCAGC 2 cut(s) 22, 175
LweI GCATC 4 cut(s) 232, 556, 1216, 1249
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 299, 465
MaeIII GTNAC 2 cut(s) 173, 284
MalI GATC 6 cut(s) 653, 711, 765, 945, 1200, 1263
MboI GATC 6 cut(s) 651, 709, 763, 943, 1198, 1261
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 2 cut(s) 42, 823
MluCI AATT 9 cut(s) 23, 225, 336, 392, 490, 744, 756, 963, 1026
MlyI GAGTC 3 cut(s) 599, 879, 898
MmeI TCCRAC 2 cut(s) 168, 791
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 7 cut(s) 180, 381, 419, 533, 957, 966, 1025
MspA1I CMGCKG 1 cut(s) 785
MspCI CTTAAG 1 cut(s) 956
MspI CCGG 1 cut(s) 275
MunI CAATTG 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 347
MvnI CGCG 1 cut(s) 1245
MwoI GCNNNNNNNGC 4 cut(s) 16, 37, 263, 1154
NcoI CCATGG 1 cut(s) 854
NdeII GATC 6 cut(s) 651, 709, 763, 943, 1198, 1261
NlaIII CATG 4 cut(s) 619, 858, 1199, 1268
NlaIV GGNNCC 1 cut(s) 831
NruI TCGCGA 1 cut(s) 1245
NspI RCATGY 1 cut(s) 619
NspV TTCGAA 1 cut(s) 111
PagI TCATGA 2 cut(s) 1195, 1264
PceI AGGCCT 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 96
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 740
PkrI GCNGC 2 cut(s) 12, 190
PleI GAGTC 3 cut(s) 599, 878, 898
PpsI GAGTC 3 cut(s) 599, 878, 898
Psp124BI GAGCTC 1 cut(s) 823
Psp1406I AACGTT 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 831
PspPI GGNCC 3 cut(s) 304, 428, 851
PstI CTGCAG 1 cut(s) 682
PsuI RGATCY 1 cut(s) 763
RruI TCGCGA 1 cut(s) 1245
RsaI GTAC 2 cut(s) 356, 831
RsaNI GTAC 2 cut(s) 355, 830
SacI GAGCTC 1 cut(s) 823
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 7 cut(s) 180, 381, 419, 533, 957, 966, 1025
SatI GCNGC 2 cut(s) 11, 189
Sau3AI GATC 6 cut(s) 651, 709, 763, 943, 1198, 1261
Sau96I GGNCC 3 cut(s) 304, 428, 851
SchI GAGTC 3 cut(s) 599, 879, 898
SduI GDGCHC 2 cut(s) 42, 823
SfaNI GCATC 4 cut(s) 232, 556, 1216, 1249
SfcI CTRYAG 1 cut(s) 678
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 3 cut(s) 304, 428, 851
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
Sse9I AATT 9 cut(s) 23, 225, 336, 392, 490, 744, 756, 963, 1026
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 2 cut(s) 345, 783
SspI AATATT 1 cut(s) 314
SspMI CTAG 1 cut(s) 237
SstI GAGCTC 1 cut(s) 823
StuI AGGCCT 1 cut(s) 562
StyI CCWWGG 3 cut(s) 481, 854, 908
TaaI ACNGT 3 cut(s) 51, 416, 516
TaiI ACGT 2 cut(s) 302, 468
TaqI TCGA 3 cut(s) 111, 1014, 1201
TasI AATT 9 cut(s) 23, 225, 336, 392, 490, 744, 756, 963, 1026
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 7 cut(s) 180, 381, 419, 533, 957, 966, 1025
Tru9I TTAA 7 cut(s) 180, 381, 419, 533, 957, 966, 1025
TscAI CASTG 3 cut(s) 54, 403, 521
TseI GCWGC 2 cut(s) 10, 188
TspDTI ATGAA 2 cut(s) 810, 1050
TspGWI ACGGA 2 cut(s) 219, 461
TspRI CASTG 3 cut(s) 54, 403, 521
Vha464I CTTAAG 1 cut(s) 956
VpaK11BI GGWCC 3 cut(s) 304, 428, 851
XapI RAATTY 3 cut(s) 225, 392, 756
XceI RCATGY 1 cut(s) 619
XmiI GTMKAC 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.