FvH4_6g00230

Calreticulin-3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
167976 .. 172272
4297 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00230.t3

Sequence Viewer

Length: 1275 bp
ATGGCAGAGCAGCTTAAGCTTCAAGGGTTGCTCCTTTTGCTGCTTATATCCTCACTTTGCCTCAACTTCCATTGTTCATTCGCAGAAATCATTTTTGAGGAGCGTTTCGAAGATGGGTGGAAAAGCCGTTGGGTTATGTCCGACTGGAAAAGAAGTGAAGGTAAAGCAGGTTACTTTAAACATGCTGCTGGAAAGTGGCATGGAGACCCAGATGATAAAGGAATTCAGACATCTAGTGATGCCAAACATTTTGCCATTTCTGCAAAGATACCGGAGTTCACTAACAAGAACAGAACATTGGTCCTCCAATATTCTGTAAGGTTTGAGCAGGAAATCGAATGTGGTGGGGGTTACATAAAGCTTATGTCTGGATTTGTTAATCAGAAGAAATTCAGTGGGGATACTCCATACAGTTTAATGTTCGGACCAGATATTTGTGGAACGGACACAAAGAAACTCCACGTTATACTCTCCTACCAAGGCCAGAATTACCCCATCAAGAAGGATTTACAGTGTGAAACTGACAAGTTAACTCATTTCTACACGTTTATTCTAAGGCCTGATGCAACTTATAGTGTCCTCGTTGACAATAGAGAAAGGGACTCTGGAAGCATGTATACAGACTGGGATATTCTTCCACCAAGAAAGATCAAAGATGTCGATGCAAAGAAGCCTGCAGATTGGGATCTTAGAGAATATATTGATGATCCTAATGACATTAAGCCTGAGGGATATGATTCAATTCCAAAAGAAATTCCAGATCCAAAAGCTAAAAAGCCCGCTGACTGGGATGAAGACGAGAGTGGTCTATGGAGAGCTCCAAAGGTACCTAATCCAGCTTACAAAGGACCATGGAGACGCAAGAGAGTCAAGAACCCTAACTATAAAGGGAAATGGAAGACTCCTTGGATTGATAATCCGGAGTTTGAAGATGACCCTGATCTTTATGTGCTTAAGCCGATTAAGTATGTTGGTATTGAGGTTTGGCAGGTAAAGGCTGGTTCAGTTTTCGACAACATTTTAATTTGTGATGACCCAGAGTATGCAAAACAAGTTGTTGAGGAAGTATTTGCTAATAGAGAGGCTGAAAAGGAAGCTTTTGAAGAAGCGGAGAAAAGGAGGAAAGCACAAGAAGAAGAGGAAGCTCAAAGAGCAAGAGAAGAAGGTGAAAAGAGGAGACGAGAAAGGGGTCATGATCGACGGTATCGAGACAGACATAGAGACAAATACAGAAGGCATCGTGATTGGGACGATTATGATCATGATGAGCTATGA

Protein Analysis

425

Amino Acids

49.94

Weight (kDa)

5.93

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 21 - 223 1.1e-54 Calreticulin family
Calreticulin PF00262 224 - 297 3.1e-19 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 158, 979
Acc65I GGTACC 1 cut(s) 826
AccB1I GGYRCC 1 cut(s) 826
AccI GTMKAC 1 cut(s) 617
AccIII TCCGGA 1 cut(s) 919
AciI CCGC 2 cut(s) 780, 1109
AclWI GGATC 3 cut(s) 693, 701, 755
AcsI RAATTY 3 cut(s) 222, 389, 753
AfaI GTAC 1 cut(s) 828
AfiI CCNNNNNNNGG 1 cut(s) 786
AflII CTTAAG 2 cut(s) 14, 953
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 4 cut(s) 23, 741, 929, 1103
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AluBI AGCT 9 cut(s) 13, 19, 361, 770, 818, 839, 1097, 1145, 1270
AluI AGCT 9 cut(s) 13, 19, 361, 770, 818, 839, 1097, 1145, 1270
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 5 cut(s) 198, 850, 1171, 1203, 1215
AlwI GGATC 3 cut(s) 693, 701, 755
Aor13HI TCCGGA 1 cut(s) 919
AoxI GGCC 2 cut(s) 481, 557
ApeKI GCWGC 3 cut(s) 10, 40, 185
ApoI RAATTY 3 cut(s) 222, 389, 753
ArsI GACNNNNNNTTYG 2 cut(s) 417, 449
Asp700I GAANNNNTTC 1 cut(s) 389
Asp718I GGTACC 1 cut(s) 826
AspS9I GGNCC 3 cut(s) 301, 425, 848
AsuHPI GGTGA 1 cut(s) 1178
AsuII TTCGAA 1 cut(s) 108
AvaII GGWCC 3 cut(s) 301, 425, 848
AxyI CCTNAGG 1 cut(s) 726
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
BanI GGYRCC 1 cut(s) 826
BanII GRGCYC 1 cut(s) 820
BarI GAAGNNNNNNTAC 2 cut(s) 601, 633
BbsI GAAGAC 2 cut(s) 801, 905
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 3 cut(s) 22, 27, 172
BccI CCATC 2 cut(s) 107, 503
BceAI ACGGC 1 cut(s) 111
BciVI GTATCC 1 cut(s) 394
BclI TGATCA 1 cut(s) 1258
BcoDI GTCTC 5 cut(s) 198, 850, 1171, 1203, 1215
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 675
BfrI CTTAAG 2 cut(s) 14, 953
BfuAI ACCTGC 2 cut(s) 158, 979
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 3 cut(s) 11, 41, 186
BlsI GCNGC 3 cut(s) 12, 42, 187
Bme18I GGWCC 3 cut(s) 301, 425, 848
BmgT120I GGNCC 3 cut(s) 301, 425, 848
BmiI GGNNCC 1 cut(s) 828
BmrI ACTGGG 2 cut(s) 634, 796
BmsI GCATC 4 cut(s) 229, 553, 652, 1246
BmuI ACTGGG 2 cut(s) 634, 796
BpiI GAAGAC 2 cut(s) 801, 905
Bpu14I TTCGAA 1 cut(s) 108
BsaBI GATNNNNATC 2 cut(s) 684, 1257
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 478, 851, 905
BsaWI WCCGGW 2 cut(s) 271, 919
Bsc4I CCNNNNNNNGG 1 cut(s) 786
Bse1I ACTGG 3 cut(s) 149, 629, 791
Bse21I CCTNAGG 1 cut(s) 726
Bse8I GATNNNNATC 2 cut(s) 684, 1257
BseAI TCCGGA 1 cut(s) 919
BseDI CCNNGG 3 cut(s) 478, 851, 905
BseGI GGATG 1 cut(s) 796
BseJI GATNNNNATC 2 cut(s) 684, 1257
BseLI CCNNNNNNNGG 1 cut(s) 786
BseMII CTCAG 1 cut(s) 717
BseNI ACTGG 3 cut(s) 149, 629, 791
BseRI GAGGAG 2 cut(s) 113, 1189
BseXI GCAGC 3 cut(s) 22, 27, 172
BshFI GGCC 2 cut(s) 483, 559
BshNI GGYRCC 1 cut(s) 826
BsiHKAI GWGCWC 1 cut(s) 820
BsiSI CCGG 2 cut(s) 272, 920
BslFI GGGAC 2 cut(s) 614, 1262
BslI CCNNNNNNNGG 1 cut(s) 786
BsmAI GTCTC 5 cut(s) 198, 850, 1171, 1203, 1215
BsmBI CGTCTC 2 cut(s) 850, 1171
BsmFI GGGAC 2 cut(s) 614, 1262
BsnI GGCC 2 cut(s) 483, 559
Bso31I GGTCTC 1 cut(s) 198
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 820
Bsp13I TCCGGA 1 cut(s) 919
Bsp143I GATC 7 cut(s) 648, 685, 706, 760, 940, 1195, 1258
Bsp19I CCATGG 1 cut(s) 851
BspACI CCGC 2 cut(s) 780, 1109
BspANI GGCC 2 cut(s) 483, 559
BspCNI CTCAG 1 cut(s) 718
BspEI TCCGGA 1 cut(s) 919
BspHI TCATGA 2 cut(s) 1192, 1261
BspLI GGNNCC 1 cut(s) 828
BspMAI CTGCAG 1 cut(s) 679
BspMI ACCTGC 2 cut(s) 158, 979
BspPI GGATC 3 cut(s) 693, 701, 755
BspT104I TTCGAA 1 cut(s) 108
BspT107I GGYRCC 1 cut(s) 826
BspTI CTTAAG 2 cut(s) 14, 953
BspTNI GGTCTC 1 cut(s) 198
BsrI ACTGG 3 cut(s) 149, 629, 791
BssECI CCNNGG 3 cut(s) 478, 851, 905
BssMI GATC 7 cut(s) 648, 685, 706, 760, 940, 1195, 1258
BssNAI GTATAC 1 cut(s) 618
BssT1I CCWWGG 3 cut(s) 478, 851, 905
Bst1107I GTATAC 1 cut(s) 618
Bst4CI ACNGT 3 cut(s) 413, 513, 1203
Bst6I CTCTTC 1 cut(s) 1131
BstAFI CTTAAG 2 cut(s) 14, 953
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 675, 780
BstDEI CTNAG 3 cut(s) 554, 689, 726
BstDSI CCRYGG 1 cut(s) 851
BstF5I GGATG 1 cut(s) 796
BstKTI GATC 7 cut(s) 651, 688, 709, 763, 943, 1198, 1261
BstMAI GTCTC 5 cut(s) 198, 850, 1171, 1203, 1215
BstMBI GATC 7 cut(s) 648, 685, 706, 760, 940, 1195, 1258
BstMWI GCNNNNNNNGC 4 cut(s) 16, 37, 260, 1151
BstNSI RCATGY 2 cut(s) 185, 616
BstSFI CTRYAG 1 cut(s) 675
BstV1I GCAGC 3 cut(s) 22, 27, 172
BstV2I GAAGAC 2 cut(s) 801, 905
BstX2I RGATCY 2 cut(s) 685, 760
BstYI RGATCY 2 cut(s) 685, 760
BstZ17I GTATAC 1 cut(s) 618
Bsu36I CCTNAGG 1 cut(s) 726
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 483, 559
BtgI CCRYGG 1 cut(s) 851
BtsCI GGATG 1 cut(s) 796
BtsIMutI CAGTG 2 cut(s) 400, 518
BveI ACCTGC 2 cut(s) 158, 979
Cac8I GCNNGC 2 cut(s) 675, 780
CciI TCATGA 2 cut(s) 1192, 1261
Cfr13I GGNCC 3 cut(s) 301, 425, 848
CseI GACGC 1 cut(s) 867
Csp6I GTAC 1 cut(s) 827
CviAII CATG 6 cut(s) 182, 200, 613, 852, 1193, 1262
CviQI GTAC 1 cut(s) 827
DdeI CTNAG 3 cut(s) 554, 689, 726
DpnI GATC 7 cut(s) 650, 687, 708, 762, 942, 1197, 1260
DpnII GATC 7 cut(s) 648, 685, 706, 760, 940, 1195, 1258
DraI TTTAAA 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 1131
EarI CTCTTC 1 cut(s) 1131
Ecl136II GAGCTC 1 cut(s) 818
Eco130I CCWWGG 3 cut(s) 478, 851, 905
Eco147I AGGCCT 1 cut(s) 559
Eco24I GRGCYC 1 cut(s) 820
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 3 cut(s) 301, 425, 848
Eco53kI GAGCTC 1 cut(s) 818
Eco81I CCTNAGG 1 cut(s) 726
EcoICRI GAGCTC 1 cut(s) 818
EcoRI GAATTC 1 cut(s) 222
EcoT14I CCWWGG 3 cut(s) 478, 851, 905
EcoT38I GRGCYC 1 cut(s) 820
ErhI CCWWGG 3 cut(s) 478, 851, 905
Esp3I CGTCTC 2 cut(s) 850, 1171
FaeI CATG 6 cut(s) 185, 203, 616, 855, 1196, 1265
FaqI GGGAC 2 cut(s) 614, 1262
FatI CATG 6 cut(s) 181, 199, 612, 851, 1192, 1261
FauI CCCGC 1 cut(s) 787
FbaI TGATCA 1 cut(s) 1258
FblI GTMKAC 1 cut(s) 617
Fnu4HI GCNGC 3 cut(s) 11, 41, 186
FokI GGATG 1 cut(s) 803
FriOI GRGCYC 1 cut(s) 820
Fsp4HI GCNGC 3 cut(s) 11, 41, 186
FspBI CTAG 1 cut(s) 234
GluI GCNGC 3 cut(s) 11, 41, 186
HaeIII GGCC 2 cut(s) 483, 559
HapII CCGG 2 cut(s) 272, 920
HgaI GACGC 1 cut(s) 867
Hin1II CATG 6 cut(s) 185, 203, 616, 855, 1196, 1265
HincII GTYRAC 2 cut(s) 531, 586
HindII GTYRAC 2 cut(s) 531, 586
HindIII AAGCTT 3 cut(s) 17, 359, 1095
HinfI GANTC 4 cut(s) 602, 737, 867, 901
HpaI GTTAAC 1 cut(s) 531
HpaII CCGG 2 cut(s) 272, 920
HphI GGTGA 1 cut(s) 1178
Hpy166II GTNNAC 4 cut(s) 279, 531, 586, 618
Hpy188I TCNGA 4 cut(s) 142, 228, 384, 425
Hpy8I GTNNAC 4 cut(s) 279, 531, 586, 618
Hpy99I CGWCG 1 cut(s) 1203
HpyAV CCTTC 4 cut(s) 152, 496, 1157, 1227
HpyCH4III ACNGT 3 cut(s) 413, 513, 1203
HpyCH4IV ACGT 2 cut(s) 462, 545
HpyCH4V TGCA 5 cut(s) 263, 566, 665, 677, 1046
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 37, 260, 1151
HpyF3I CTNAG 3 cut(s) 554, 689, 726
HpySE526I ACGT 2 cut(s) 462, 545
Hsp92II CATG 6 cut(s) 185, 203, 616, 855, 1196, 1265
Kpn2I TCCGGA 1 cut(s) 919
KpnI GGTACC 1 cut(s) 830
Ksp22I TGATCA 1 cut(s) 1258
KspAI GTTAAC 1 cut(s) 531
Kzo9I GATC 7 cut(s) 648, 685, 706, 760, 940, 1195, 1258
LmnI GCTCC 3 cut(s) 36, 100, 823
Lsp1109I GCAGC 3 cut(s) 22, 27, 172
LweI GCATC 4 cut(s) 229, 553, 652, 1246
MaeI CTAG 1 cut(s) 234
MaeII ACGT 2 cut(s) 462, 545
MaeIII GTNAC 2 cut(s) 170, 350
MalI GATC 7 cut(s) 650, 687, 708, 762, 942, 1197, 1260
MboI GATC 7 cut(s) 648, 685, 706, 760, 940, 1195, 1258
MflI RGATCY 2 cut(s) 685, 760
MhlI GDGCHC 1 cut(s) 820
MluCI AATT 6 cut(s) 222, 389, 487, 741, 753, 1023
MlyI GAGTC 3 cut(s) 596, 876, 895
MmeI TCCRAC 1 cut(s) 165
MroI TCCGGA 1 cut(s) 919
MroXI GAANNNNTTC 1 cut(s) 389
MseI TTAA 9 cut(s) 15, 177, 378, 416, 530, 720, 954, 963, 1022
MspA1I CMGCKG 1 cut(s) 782
MspCI CTTAAG 2 cut(s) 14, 953
MspI CCGG 2 cut(s) 272, 920
MwoI GCNNNNNNNGC 4 cut(s) 16, 37, 260, 1151
NcoI CCATGG 1 cut(s) 851
NdeII GATC 7 cut(s) 648, 685, 706, 760, 940, 1195, 1258
NlaIII CATG 6 cut(s) 185, 203, 616, 855, 1196, 1265
NlaIV GGNNCC 1 cut(s) 828
NspI RCATGY 2 cut(s) 185, 616
NspV TTCGAA 1 cut(s) 108
PagI TCATGA 2 cut(s) 1192, 1261
PceI AGGCCT 1 cut(s) 559
PcsI WCGNNNNNNNCGW 1 cut(s) 1204
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 737
PkrI GCNGC 3 cut(s) 12, 42, 187
PleI GAGTC 3 cut(s) 596, 875, 895
PpsI GAGTC 3 cut(s) 596, 875, 895
Psp124BI GAGCTC 1 cut(s) 820
PspN4I GGNNCC 1 cut(s) 828
PspPI GGNCC 3 cut(s) 301, 425, 848
PstI CTGCAG 1 cut(s) 679
PsuI RGATCY 2 cut(s) 685, 760
RsaI GTAC 1 cut(s) 828
RsaNI GTAC 1 cut(s) 827
SacI GAGCTC 1 cut(s) 820
SaqAI TTAA 9 cut(s) 15, 177, 378, 416, 530, 720, 954, 963, 1022
SatI GCNGC 3 cut(s) 11, 41, 186
Sau3AI GATC 7 cut(s) 648, 685, 706, 760, 940, 1195, 1258
Sau96I GGNCC 3 cut(s) 301, 425, 848
SchI GAGTC 3 cut(s) 596, 876, 895
SduI GDGCHC 1 cut(s) 820
SfaNI GCATC 4 cut(s) 229, 553, 652, 1246
SfcI CTRYAG 1 cut(s) 675
SfuI TTCGAA 1 cut(s) 108
SinI GGWCC 3 cut(s) 301, 425, 848
SmlI CTYRAG 2 cut(s) 14, 953
SmoI CTYRAG 2 cut(s) 14, 953
Sse9I AATT 6 cut(s) 222, 389, 487, 741, 753, 1023
SseBI AGGCCT 1 cut(s) 559
SsiI CCGC 2 cut(s) 780, 1109
SspI AATATT 1 cut(s) 311
SspMI CTAG 1 cut(s) 234
SstI GAGCTC 1 cut(s) 820
StuI AGGCCT 1 cut(s) 559
StyI CCWWGG 3 cut(s) 478, 851, 905
TaaI ACNGT 3 cut(s) 413, 513, 1203
TaiI ACGT 2 cut(s) 465, 548
TaqI TCGA 6 cut(s) 108, 336, 660, 1011, 1198, 1207
TasI AATT 6 cut(s) 222, 389, 487, 741, 753, 1023
TfiI GAWTC 1 cut(s) 737
Tru1I TTAA 9 cut(s) 15, 177, 378, 416, 530, 720, 954, 963, 1022
Tru9I TTAA 9 cut(s) 15, 177, 378, 416, 530, 720, 954, 963, 1022
TscAI CASTG 2 cut(s) 400, 518
TseI GCWGC 3 cut(s) 10, 40, 185
TspDTI ATGAA 2 cut(s) 66, 807
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 2 cut(s) 400, 518
Vha464I CTTAAG 2 cut(s) 14, 953
VpaK11BI GGWCC 3 cut(s) 301, 425, 848
XapI RAATTY 3 cut(s) 222, 389, 753
XceI RCATGY 2 cut(s) 185, 616
XmiI GTMKAC 1 cut(s) 617
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.