Rmu_sc0001814.1_g000009

Calreticulin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001814.1
Physical Location & Seq
Reverse (-)
53061 .. 59500
6440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001814.1_g000009.1.cds

Sequence Viewer

Length: 1263 bp
atgaagcttctcgaatctcttcttcttcttcttcttctggttccgcttctatgcctccacttccgtctcgccgtctccgaaatcttcttcgaagagcgatttgaagatgggtggaagagccggtgggtgttgtcggactggaaaagggccgaaggaaaagcaggaacgtttaagtacactgctgggaaatggtctggagatcctgatgataaaggcattcagacatataatgatgccaagcattatgccatatctgcaaaaattcctgagttcagcaacaaaaacagaactctagtggtccaatattcgattaaatttgagcaagacattgaatgtggtggcggttacatcaagcttctatctggctatgtgaatcagaaaaagttcggcggtgataccccatacagtttcatgtttggaccagatatgtgtggctcacagaccaaaaaactccatcttatactttcttaccaggggcagaactatcccataaaaaaggatcttcaatgtgaaacagacaagtttactcatttctatacatttattcttagacctgatgcaacttacagtgtccttgttgataaccgagaaagagattctggaagcatgtatactgattgggatatccttcctccacgaaaaatcaaggatgtcaatgcaagaaagccatcagactgggatgacaaagagtacattgaagaccgtaaagccgtcaaaccagagggatatgattcagttccatctgaaattcctgatccaaaggccaaagagcccgaggactgggacgaggaagagaacggattgtggagaccaccaaagatcccaaatccagcttataagggcccatggaagcgcaagaaaatcaagaaccccaactacaaggggaagtggaagactccgtggattgataacccagagtttgaggatgatcctgacctttatgtgctgaagccaataaaatatgtgggcattgaagtttggcaggtaaaagctggttcagttttcgacaacattttgatctgtgatgatccacagtatgcaaaacaagtggtagaagagatattttccaatagagaggctgaaaaagaagcttttgaggaagcagagaaggagagaagagcacgagaagcagaggatgctagaagagcaagagaggaaggtgaaagaaagaagtgggagagggatcgtcaatatggagataagaggcgccgtagaaggcatgatccccgggattatttggatgattaccatgatgaactatga

Protein Analysis

420

Amino Acids

49.57

Weight (kDa)

5.91

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 837
Acc36I ACCTGC 1 cut(s) 973
AccB1I GGYRCC 1 cut(s) 1206
AccI GTMKAC 1 cut(s) 611
AciI CCGC 3 cut(s) 44, 342, 390
AclI AACGTT 1 cut(s) 167
AclWI GGATC 8 cut(s) 194, 507, 749, 814, 923, 1022, 1191, 1217
AcsI RAATTY 3 cut(s) 261, 314, 747
AcuI CTGAAG 1 cut(s) 968
AcyI GRCGYC 1 cut(s) 1207
AfaI GTAC 2 cut(s) 176, 692
AfiI CCNNNNNNNGG 1 cut(s) 780
AgsI TTSAA 5 cut(s) 104, 332, 506, 698, 974
AjnI CCWGG 1 cut(s) 471
AluBI AGCT 5 cut(s) 7, 355, 833, 992, 1091
AluI AGCT 5 cut(s) 7, 355, 833, 992, 1091
Alw21I GWGCWC 1 cut(s) 1123
Alw26I GTCTC 3 cut(s) 71, 79, 802
AlwI GGATC 8 cut(s) 194, 507, 749, 814, 923, 1022, 1191, 1217
Ama87I CYCGRG 2 cut(s) 773, 1227
AoxI GGCC 3 cut(s) 147, 762, 841
ApaI GGGCCC 1 cut(s) 845
ApoI RAATTY 3 cut(s) 261, 314, 747
Asp700I GAANNNNTTC 2 cut(s) 18, 383
AspLEI GCGC 2 cut(s) 855, 1209
AspS9I GGNCC 5 cut(s) 147, 298, 419, 841, 842
AsuC2I CCSGG 2 cut(s) 1228, 1229
AsuHPI GGTGA 2 cut(s) 404, 1172
AsuII TTCGAA 1 cut(s) 90
AvaI CYCGRG 2 cut(s) 773, 1227
AvaII GGWCC 2 cut(s) 298, 419
BaeGI GKGCMC 1 cut(s) 845
BanI GGYRCC 1 cut(s) 1206
BanII GRGCYC 2 cut(s) 774, 845
BarI GAAGNNNNNNTAC 2 cut(s) 595, 627
BauI CACGAG 1 cut(s) 1122
BbsI GAAGAC 2 cut(s) 705, 899
Bbv12I GWGCWC 1 cut(s) 1123
BccI CCATC 4 cut(s) 101, 462, 676, 748
BceAI ACGGC 3 cut(s) 56, 695, 1194
BciT130I CCWGG 1 cut(s) 473
BcnI CCSGG 2 cut(s) 1228, 1229
BcoDI GTCTC 3 cut(s) 71, 79, 802
BfaI CTAG 2 cut(s) 293, 1140
BfoI RGCGCY 1 cut(s) 1210
BfuAI ACCTGC 1 cut(s) 973
Bme1390I CCNGG 3 cut(s) 473, 1228, 1229
Bme18I GGWCC 2 cut(s) 298, 419
BmeT110I CYCGRG 2 cut(s) 773, 1227
BmgT120I GGNCC 5 cut(s) 147, 298, 419, 841, 842
BmiI GGNNCC 3 cut(s) 42, 843, 1208
BmrFI CCNGG 3 cut(s) 473, 1228, 1229
BmrI ACTGGG 2 cut(s) 685, 790
BmsI GCATC 3 cut(s) 223, 547, 1126
BmuI ACTGGG 2 cut(s) 685, 790
BpiI GAAGAC 2 cut(s) 705, 899
BpmI CTGGAG 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 90
BpuMI CCSGG 2 cut(s) 1228, 1229
BsaHI GRCGYC 1 cut(s) 1207
BsaI GGTCTC 1 cut(s) 802
BsaJI CCNNGG 6 cut(s) 472, 774, 845, 899, 1226, 1227
Bsc4I CCNNNNNNNGG 1 cut(s) 780
Bse118I RCCGGY 1 cut(s) 120
Bse1I ACTGG 3 cut(s) 143, 680, 785
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 6 cut(s) 472, 774, 845, 899, 1226, 1227
BseGI GGATG 5 cut(s) 655, 685, 931, 1141, 1246
BseLI CCNNNNNNNGG 1 cut(s) 780
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 3 cut(s) 143, 680, 785
BseSI GKGCMC 1 cut(s) 845
BseYI CCCAGC 1 cut(s) 182
BshFI GGCC 3 cut(s) 149, 764, 843
BshNI GGYRCC 1 cut(s) 1206
BsiHKAI GWGCWC 1 cut(s) 1123
BsiHKCI CYCGRG 2 cut(s) 773, 1227
BsiSI CCGG 2 cut(s) 121, 1228
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 1 cut(s) 780
BsmAI GTCTC 3 cut(s) 71, 79, 802
BsmBI CGTCTC 2 cut(s) 71, 79
BsmFI GGGAC 1 cut(s) 797
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 3 cut(s) 149, 764, 843
Bso31I GGTCTC 1 cut(s) 802
BsoBI CYCGRG 2 cut(s) 773, 1227
Bsp119I TTCGAA 1 cut(s) 90
Bsp120I GGGCCC 1 cut(s) 841
Bsp1286I GDGCHC 3 cut(s) 774, 845, 1123
Bsp143I GATC 9 cut(s) 199, 499, 754, 819, 928, 1017, 1027, 1183, 1222
Bsp19I CCATGG 1 cut(s) 845
BspACI CCGC 3 cut(s) 44, 342, 390
BspANI GGCC 3 cut(s) 149, 764, 843
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 42, 843, 1208
BspMI ACCTGC 1 cut(s) 973
BspPI GGATC 8 cut(s) 194, 507, 749, 814, 923, 1022, 1191, 1217
BspQI GCTCTTC 4 cut(s) 87, 110, 1111, 1138
BspT104I TTCGAA 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 1206
BspTNI GGTCTC 1 cut(s) 802
BsrFI RCCGGY 1 cut(s) 120
BsrI ACTGG 3 cut(s) 143, 680, 785
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 6 cut(s) 472, 774, 845, 899, 1226, 1227
BssMI GATC 9 cut(s) 199, 499, 754, 819, 928, 1017, 1027, 1183, 1222
BssNAI GTATAC 1 cut(s) 612
BssNI GRCGYC 1 cut(s) 1207
BssSI CACGAG 1 cut(s) 1122
BssT1I CCWWGG 1 cut(s) 845
Bst1107I GTATAC 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 1122
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 4 cut(s) 407, 569, 704, 1035
Bst6I CTCTTC 7 cut(s) 24, 87, 110, 786, 1050, 1111, 1138
BstACI GRCGYC 1 cut(s) 1207
BstAPI GCANNNNNTGC 1 cut(s) 1136
BstBI TTCGAA 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 267, 548
BstDSI CCRYGG 2 cut(s) 845, 899
BstF5I GGATG 5 cut(s) 655, 685, 931, 1141, 1246
BstH2I RGCGCY 1 cut(s) 1210
BstHHI GCGC 2 cut(s) 855, 1209
BstKTI GATC 9 cut(s) 202, 502, 757, 822, 931, 1020, 1030, 1186, 1225
BstMAI GTCTC 3 cut(s) 71, 79, 802
BstMBI GATC 9 cut(s) 199, 499, 754, 819, 928, 1017, 1027, 1183, 1222
BstMWI GCNNNNNNNGC 4 cut(s) 254, 1127, 1136, 1145
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 471, 1226, 1227
BstSLI GKGCMC 1 cut(s) 845
BstV2I GAAGAC 2 cut(s) 705, 899
BstX2I RGATCY 3 cut(s) 199, 499, 819
BstXI CCANNNNNNTGG 1 cut(s) 675
BstYI RGATCY 3 cut(s) 199, 499, 819
BstZ17I GTATAC 1 cut(s) 612
BsuRI GGCC 3 cut(s) 149, 764, 843
BtgI CCRYGG 2 cut(s) 845, 899
BtsCI GGATG 5 cut(s) 655, 685, 931, 1141, 1246
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 177, 574
BveI ACCTGC 1 cut(s) 973
CfoI GCGC 2 cut(s) 855, 1209
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 5 cut(s) 147, 298, 419, 841, 842
Cfr9I CCCGGG 1 cut(s) 1227
Csp6I GTAC 2 cut(s) 175, 691
CspCI CAANNNNNGTGG 2 cut(s) 1029, 1064
CviAII CATG 5 cut(s) 412, 607, 846, 1220, 1250
CviQI GTAC 2 cut(s) 175, 691
DdeI CTNAG 2 cut(s) 267, 548
DinI GGCGCC 1 cut(s) 1208
DpnI GATC 9 cut(s) 201, 501, 756, 821, 930, 1019, 1029, 1185, 1224
DpnII GATC 9 cut(s) 199, 499, 754, 819, 928, 1017, 1027, 1183, 1222
Eam1104I CTCTTC 7 cut(s) 24, 87, 110, 786, 1050, 1111, 1138
EarI CTCTTC 7 cut(s) 24, 87, 110, 786, 1050, 1111, 1138
Eco130I CCWWGG 1 cut(s) 845
Eco24I GRGCYC 2 cut(s) 774, 845
Eco31I GGTCTC 1 cut(s) 802
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 2 cut(s) 298, 419
Eco57I CTGAAG 1 cut(s) 968
Eco88I CYCGRG 2 cut(s) 773, 1227
EcoO109I RGGNCCY 1 cut(s) 841
EcoRII CCWGG 1 cut(s) 471
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 845
EcoT38I GRGCYC 2 cut(s) 774, 845
EgeI GGCGCC 1 cut(s) 1208
EheI GGCGCC 1 cut(s) 1208
ErhI CCWWGG 1 cut(s) 845
Esp3I CGTCTC 2 cut(s) 71, 79
FaeI CATG 5 cut(s) 415, 610, 849, 1223, 1253
FaqI GGGAC 1 cut(s) 797
FatI CATG 5 cut(s) 411, 606, 845, 1219, 1249
FblI GTMKAC 1 cut(s) 611
FokI GGATG 5 cut(s) 662, 692, 938, 1148, 1253
FriOI GRGCYC 2 cut(s) 774, 845
FspBI CTAG 2 cut(s) 293, 1140
GlaI GCGC 2 cut(s) 854, 1208
GsaI CCCAGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 1210
HaeIII GGCC 3 cut(s) 149, 764, 843
HapII CCGG 2 cut(s) 121, 1228
HhaI GCGC 2 cut(s) 855, 1209
Hin1I GRCGYC 1 cut(s) 1207
Hin1II CATG 5 cut(s) 415, 610, 849, 1223, 1253
Hin6I GCGC 2 cut(s) 853, 1207
HinP1I GCGC 2 cut(s) 853, 1207
HindIII AAGCTT 3 cut(s) 5, 353, 1089
HinfI GANTC 5 cut(s) 14, 373, 596, 731, 895
HpaII CCGG 2 cut(s) 121, 1228
HphI GGTGA 2 cut(s) 404, 1172
Hpy166II GTNNAC 3 cut(s) 177, 525, 612
Hpy188I TCNGA 6 cut(s) 79, 136, 222, 378, 673, 745
Hpy188III TCNNGA 8 cut(s) 11, 195, 203, 266, 600, 752, 865, 932
Hpy8I GTNNAC 3 cut(s) 177, 525, 612
HpyAV CCTTC 5 cut(s) 146, 638, 1102, 1151, 1209
HpyCH4III ACNGT 4 cut(s) 407, 569, 704, 1035
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 4 cut(s) 257, 560, 659, 1040
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 1127, 1136, 1145
HpyF3I CTNAG 2 cut(s) 267, 548
HpySE526I ACGT 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 1207
Hsp92II CATG 5 cut(s) 415, 610, 849, 1223, 1253
HspAI GCGC 2 cut(s) 853, 1207
KasI GGCGCC 1 cut(s) 1206
Kzo9I GATC 9 cut(s) 199, 499, 754, 819, 928, 1017, 1027, 1183, 1222
LguI GCTCTTC 4 cut(s) 87, 110, 1111, 1138
LweI GCATC 3 cut(s) 223, 547, 1126
MaeI CTAG 2 cut(s) 293, 1140
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 344
MalI GATC 9 cut(s) 201, 501, 756, 821, 930, 1019, 1029, 1185, 1224
MboI GATC 9 cut(s) 199, 499, 754, 819, 928, 1017, 1027, 1183, 1222
MflI RGATCY 3 cut(s) 199, 499, 819
MhlI GDGCHC 3 cut(s) 774, 845, 1123
MluCI AATT 3 cut(s) 261, 314, 747
Mly113I GGCGCC 1 cut(s) 1207
MlyI GAGTC 1 cut(s) 889
MmeI TCCRAC 1 cut(s) 114
MroXI GAANNNNTTC 2 cut(s) 18, 383
MseI TTAA 2 cut(s) 171, 312
MspI CCGG 2 cut(s) 121, 1228
MspR9I CCNGG 3 cut(s) 473, 1228, 1229
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 1 cut(s) 473
MwoI GCNNNNNNNGC 4 cut(s) 254, 1127, 1136, 1145
NarI GGCGCC 1 cut(s) 1207
NciI CCSGG 2 cut(s) 1228, 1229
NcoI CCATGG 1 cut(s) 845
NdeII GATC 9 cut(s) 199, 499, 754, 819, 928, 1017, 1027, 1183, 1222
NlaIII CATG 5 cut(s) 415, 610, 849, 1223, 1253
NlaIV GGNNCC 3 cut(s) 42, 843, 1208
NspI RCATGY 1 cut(s) 610
NspV TTCGAA 1 cut(s) 90
PciSI GCTCTTC 4 cut(s) 87, 110, 1111, 1138
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 216
PdmI GAANNNNTTC 2 cut(s) 18, 383
PfeI GAWTC 4 cut(s) 14, 373, 596, 731
PleI GAGTC 1 cut(s) 889
PluTI GGCGCC 1 cut(s) 1210
PpsI GAGTC 1 cut(s) 889
PsiI TTATAA 1 cut(s) 837
Psp1406I AACGTT 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 471
PspFI CCCAGC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 3 cut(s) 42, 843, 1208
PspOMI GGGCCC 1 cut(s) 841
PspPI GGNCC 5 cut(s) 147, 298, 419, 841, 842
PsrI GAACNNNNNNTAC 2 cut(s) 860, 892
PsuI RGATCY 3 cut(s) 199, 499, 819
RsaI GTAC 2 cut(s) 176, 692
RsaNI GTAC 2 cut(s) 175, 691
SapI GCTCTTC 4 cut(s) 87, 110, 1111, 1138
SaqAI TTAA 2 cut(s) 171, 312
Sau3AI GATC 9 cut(s) 199, 499, 754, 819, 928, 1017, 1027, 1183, 1222
Sau96I GGNCC 5 cut(s) 147, 298, 419, 841, 842
SchI GAGTC 1 cut(s) 889
ScrFI CCNGG 3 cut(s) 473, 1228, 1229
SduI GDGCHC 3 cut(s) 774, 845, 1123
SfaNI GCATC 3 cut(s) 223, 547, 1126
SfoI GGCGCC 1 cut(s) 1208
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 2 cut(s) 298, 419
SmaI CCCGGG 1 cut(s) 1229
Sse9I AATT 3 cut(s) 261, 314, 747
SsiI CCGC 3 cut(s) 44, 342, 390
SspDI GGCGCC 1 cut(s) 1206
SspI AATATT 1 cut(s) 305
SspMI CTAG 2 cut(s) 293, 1140
StyD4I CCNGG 3 cut(s) 471, 1226, 1227
StyI CCWWGG 1 cut(s) 845
TaaI ACNGT 4 cut(s) 407, 569, 704, 1035
TaiI ACGT 1 cut(s) 170
TaqI TCGA 4 cut(s) 12, 90, 308, 1005
TasI AATT 3 cut(s) 261, 314, 747
TatI WGTACW 2 cut(s) 174, 690
TfiI GAWTC 4 cut(s) 14, 373, 596, 731
Tru1I TTAA 2 cut(s) 171, 312
Tru9I TTAA 2 cut(s) 171, 312
TscAI CASTG 2 cut(s) 184, 574
TspDTI ATGAA 2 cut(s) 17, 400
TspGWI ACGGA 3 cut(s) 53, 813, 888
TspMI CCCGGG 1 cut(s) 1227
TspRI CASTG 2 cut(s) 184, 574
VpaK11BI GGWCC 2 cut(s) 298, 419
XapI RAATTY 3 cut(s) 261, 314, 747
XceI RCATGY 1 cut(s) 610
XmaI CCCGGG 1 cut(s) 1227
XmiI GTMKAC 1 cut(s) 611
XmnI GAANNNNTTC 2 cut(s) 18, 383
XspI CTAG 2 cut(s) 293, 1140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.