Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002902

Physical Location & Seq

Genomic Coordinates Reverse (-)

30535859 .. 30540219

Gene Structure 4361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G363200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGCGAAGTTGCCATGCCCCGTTGCTCCTAGTCATCAGCACCTGTTTTTGCTAGTAATAATAATAATAGCACTCTCCTTGCATTCTTTTTGCTTTCATTGTTCGTGTTCAGAGATCATTTTCGAAGAGCGTTTTGAAGAGGGGTGGCAAAGACGTTGGGTTAAATCCGACTGGAAAAGCAGTGAAGGCAAAGCAGGTTCCTTTAAACACACAGCTGGAAAGTGGTCTGGAGACCCAGATGATAAAGGAATTCAGACATCAAATGATGCCAAACATTTTGCCATATCTGCAAAGATACCAGAGTTCAGCAACAAGAACAGGACGTTGGTCCTCCAATACTCTGTACGGTTTGAGCAGGAAATTGAATGTGGTGGGGGTTACATAAAGCTTATGTCTGGATTTGTTAATCAGAAGAAATTCAGTGGGGACACTCCATACAGTTTAATGTTTGGACCTGATATATGTGGCACGGATACAAAGAAGCTCCATGTTATTCTCTCTTACCAAGGCCAGAATTACCCCATCAAGAAGGATTTACAGTGTGAAACCGACAAGTTGACTCATTTTTACACATTCATTCTTAGGCCTGATGCAACGTATAGTGTCCTAGTTGACAACAGAGAAAGGGACTCTGGAAGCATGTACACAGACTGGGATATTCTTCCTCCAAGAAAGATTAAAGATGTTAATGCAAAGAAGCCAGCAGACTGGGATCTTAGAGAATACATTGATGATCCTGATAGCATCAAACCTGAGGGATATGATTCAATTCCAAGAGAAATTTCAGATCCAAAAGCTAAAGAGCCTGATGACTGGGATGAAGAAGAGAACGGTTTATGGAAAGCTCCAAAGATACCAAATCCAGCTTATAAAGGACCATGGAAACCCAAGAAAATCAAGAACCCCAATTATAAAGGGAAATGGAAGACTCCTTGGATTGATAATCCTGAGTTTGAAGATGACCATGATCTTTATGTGCTTAAGCCAATTAAGTACGTGGGTGTCGAAGTTTGGCAGGTAAAGGCTGGTTCAGTTTTTGACAACATTTTAATTTGTGATGATCCTGAGTATGCCAAACAAGTTGTCGAGGAAGTCTTTACCAATAGAGAGGCTGAAAAGGATGCCTTTGAAGAAGCAGAAAAAAAGAGGAAGGCACAAGAGGAAGAGGAAGCTCGAAGAGCGAGAGAGGAGGGTGAAAGGAGGAGACGAGATAGGGGTTATGATCGAGGTCGAGACAGACACAGAGACAGATACCGAAGGCACCGCCACCGTGATTGGGATTATGATCATGACGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009812 GO:0009987 GO:0010204 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0033554 GO:0034050 GO:0042175 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0080134 GO:0098542 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

434

Amino Acids

50.82

Weight (kDa)

6.07

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08450 AT1G08450 AT1G08450
fragaria_vesca	FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_6g00230 FvH4_6g00230 FvH4_6g00230
malus_domestica	MD04G1045300.v1.1 MD04G1247000.v1.1 MD12G1263200.v1.1
prunus_persica	Prupe.1G198500_v2.0.a1 Prupe.6G363200_v2.0.a1
pyrus_communis	pycom04g21770 pycom12g24070
rosa_chinensis	RchiOBHm_Chr2g0118841 RchiOBHm_Chr3g0447601
rosa_laevigata	RLG00000018425 RLG00000025985
rosa_multiflora	Rmu_sc0001814.1_g000009 Rmu_sc0003550.1_g000005
rosa_roxburghii	Rroxscaffold_2G00125130 Rroxscaffold_6G00425810
rosa_rugosa	Rorug02G0219200 Rorug02G0603400
rosa_samantha	Rh2AG276300 Rh2BG288100 Rh2DG283200 Rh2DG302300 Rh3AG003600 Rh3BG003100 Rh3CG003400 Rh3DG003400
rosa_wichuraiana	Rw2G021990 Rw3G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	870, 912
Acc36I	ACCTGC	2 cut(s)	185, 1006
AccB1I	GGYRCC	1 cut(s)	1260
AciI	CCGC	1 cut(s)	1264
AclWI	GGATC	4 cut(s)	720, 728, 782, 1055
AcsI	RAATTY	3 cut(s)	249, 416, 780
AfaI	GTAC	3 cut(s)	345, 644, 995
AfiI	CCNNNNNNNGG	1 cut(s)	1276
AflII	CTTAAG	1 cut(s)	980
AgsI	TTSAA	5 cut(s)	137, 365, 768, 956, 1130
AjuI	GAANNNNNNNTTGG	4 cut(s)	308, 340, 766, 798
AluBI	AGCT	8 cut(s)	215, 388, 484, 797, 845, 866, 1172, 1297
AluI	AGCT	8 cut(s)	215, 388, 484, 797, 845, 866, 1172, 1297
Alw26I	GTCTC	4 cut(s)	225, 1198, 1227, 1239
AlwI	GGATC	4 cut(s)	720, 728, 782, 1055
AlwNI	CAGNNNCTG	1 cut(s)	43
AoxI	GGCC	2 cut(s)	508, 584
ApoI	RAATTY	3 cut(s)	249, 416, 780
ArsI	GACNNNNNNTTYG	2 cut(s)	1068, 1100
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	3 cut(s)	328, 452, 875
AsuHPI	GGTGA	1 cut(s)	1205
AsuII	TTCGAA	1 cut(s)	123
AvaII	GGWCC	3 cut(s)	328, 452, 875
AxyI	CCTNAGG	1 cut(s)	753
BaeI	ACNNNNGTAYC	2 cut(s)	287, 320
BanI	GGYRCC	1 cut(s)	1260
BbsI	GAAGAC	1 cut(s)	932
BccI	CCATC	1 cut(s)	530
BciVI	GTATCC	1 cut(s)	466
BclI	TGATCA	1 cut(s)	1285
BcoDI	GTCTC	4 cut(s)	225, 1198, 1227, 1239
BfaI	CTAG	3 cut(s)	30, 53, 608
BfrI	CTTAAG	1 cut(s)	980
BfuAI	ACCTGC	2 cut(s)	185, 1006
BfuI	GTATCC	1 cut(s)	466
Bme18I	GGWCC	3 cut(s)	328, 452, 875
BmgT120I	GGNCC	3 cut(s)	328, 452, 875
BmiI	GGNNCC	2 cut(s)	199, 1262
BmrI	ACTGGG	3 cut(s)	661, 718, 823
BmsI	GCATC	4 cut(s)	256, 580, 753, 1111
BmuI	ACTGGG	3 cut(s)	661, 718, 823
BoxI	GACNNNNGTC	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	932
BpmI	CTGGAG	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	997
BsaBI	GATNNNNATC	1 cut(s)	1284
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	505, 878, 932
Bsc4I	CCNNNNNNNGG	1 cut(s)	1276
Bse1I	ACTGG	4 cut(s)	176, 656, 713, 818
Bse21I	CCTNAGG	1 cut(s)	753
Bse8I	GATNNNNATC	1 cut(s)	1284
BseDI	CCNNGG	3 cut(s)	505, 878, 932
BseGI	GGATG	2 cut(s)	823, 1126
BseJI	GATNNNNATC	1 cut(s)	1284
BseLI	CCNNNNNNNGG	1 cut(s)	1276
BseMII	CTCAG	3 cut(s)	744, 939, 1056
BseNI	ACTGG	4 cut(s)	176, 656, 713, 818
BseRI	GAGGAG	2 cut(s)	1202, 1216
BshFI	GGCC	2 cut(s)	510, 586
BshNI	GGYRCC	1 cut(s)	1260
BslFI	GGGAC	2 cut(s)	440, 641
BslI	CCNNNNNNNGG	1 cut(s)	1276
BsmAI	GTCTC	4 cut(s)	225, 1198, 1227, 1239
BsmBI	CGTCTC	1 cut(s)	1198
BsmFI	GGGAC	2 cut(s)	440, 641
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	510, 586
Bso31I	GGTCTC	1 cut(s)	225
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	8 cut(s)	114, 712, 733, 787, 967, 1060, 1222, 1285
Bsp19I	CCATGG	1 cut(s)	878
BspACI	CCGC	1 cut(s)	1264
BspANI	GGCC	2 cut(s)	510, 586
BspCNI	CTCAG	3 cut(s)	745, 940, 1057
BspHI	TCATGA	1 cut(s)	1288
BspLI	GGNNCC	2 cut(s)	199, 1262
BspMI	ACCTGC	2 cut(s)	185, 1006
BspPI	GGATC	4 cut(s)	720, 728, 782, 1055
BspQI	GCTCTTC	2 cut(s)	120, 1171
BspT104I	TTCGAA	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	1260
BspTI	CTTAAG	1 cut(s)	980
BspTNI	GGTCTC	1 cut(s)	225
BsrGI	TGTACA	1 cut(s)	642
BsrI	ACTGG	4 cut(s)	176, 656, 713, 818
BssECI	CCNNGG	3 cut(s)	505, 878, 932
BssMI	GATC	8 cut(s)	114, 712, 733, 787, 967, 1060, 1222, 1285
BssT1I	CCWWGG	3 cut(s)	505, 878, 932
Bst4CI	ACNGT	5 cut(s)	348, 440, 540, 833, 1271
Bst6I	CTCTTC	5 cut(s)	120, 132, 819, 1158, 1171
BstAFI	CTTAAG	1 cut(s)	980
BstAUI	TGTACA	1 cut(s)	642
BstBAI	YACGTR	1 cut(s)	997
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	5 cut(s)	581, 716, 753, 948, 1065
BstDSI	CCRYGG	1 cut(s)	878
BstF5I	GGATG	2 cut(s)	823, 1126
BstKTI	GATC	8 cut(s)	117, 715, 736, 790, 970, 1063, 1225, 1288
BstMAI	GTCTC	4 cut(s)	225, 1198, 1227, 1239
BstMBI	GATC	8 cut(s)	114, 712, 733, 787, 967, 1060, 1222, 1285
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 287, 1178
BstNSI	RCATGY	1 cut(s)	643
BstPAI	GACNNNNGTC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	932
BstX2I	RGATCY	2 cut(s)	712, 787
BstXI	CCANNNNNNTGG	1 cut(s)	708
BstYI	RGATCY	2 cut(s)	712, 787
Bsu36I	CCTNAGG	1 cut(s)	753
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	510, 586
BtgI	CCRYGG	1 cut(s)	878
BtsCI	GGATG	2 cut(s)	823, 1126
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	3 cut(s)	187, 427, 545
BveI	ACCTGC	2 cut(s)	185, 1006
Cac8I	GCNNGC	1 cut(s)	702
CaiI	CAGNNNCTG	1 cut(s)	43
CciI	TCATGA	1 cut(s)	1288
Cfr13I	GGNCC	3 cut(s)	328, 452, 875
Csp6I	GTAC	3 cut(s)	344, 643, 994
CspCI	CAANNNNNGTGG	2 cut(s)	1256, 1291
CviAII	CATG	6 cut(s)	15, 488, 640, 879, 965, 1289
CviQI	GTAC	3 cut(s)	344, 643, 994
DdeI	CTNAG	5 cut(s)	581, 716, 753, 948, 1065
DpnI	GATC	8 cut(s)	116, 714, 735, 789, 969, 1062, 1224, 1287
DpnII	GATC	8 cut(s)	114, 712, 733, 787, 967, 1060, 1222, 1285
DraI	TTTAAA	1 cut(s)	205
Eam1104I	CTCTTC	5 cut(s)	120, 132, 819, 1158, 1171
EarI	CTCTTC	5 cut(s)	120, 132, 819, 1158, 1171
Eco130I	CCWWGG	3 cut(s)	505, 878, 932
Eco147I	AGGCCT	1 cut(s)	586
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	3 cut(s)	328, 452, 875
Eco81I	CCTNAGG	1 cut(s)	753
EcoRI	GAATTC	1 cut(s)	249
EcoT14I	CCWWGG	3 cut(s)	505, 878, 932
ErhI	CCWWGG	3 cut(s)	505, 878, 932
Esp3I	CGTCTC	1 cut(s)	1198
FaeI	CATG	6 cut(s)	18, 491, 643, 882, 968, 1292
FalI	AAGNNNNNCTT	2 cut(s)	1109, 1141
FaqI	GGGAC	2 cut(s)	440, 641
FatI	CATG	6 cut(s)	14, 487, 639, 878, 964, 1288
FbaI	TGATCA	1 cut(s)	1285
FokI	GGATG	2 cut(s)	830, 1133
FspBI	CTAG	3 cut(s)	30, 53, 608
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	510, 586
Hin1II	CATG	6 cut(s)	18, 491, 643, 882, 968, 1292
HincII	GTYRAC	2 cut(s)	558, 613
HindII	GTYRAC	2 cut(s)	558, 613
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	559, 629, 764, 928
HphI	GGTGA	1 cut(s)	1205
Hpy166II	GTNNAC	3 cut(s)	558, 613, 645
Hpy188I	TCNGA	5 cut(s)	112, 169, 255, 411, 787
Hpy8I	GTNNAC	3 cut(s)	558, 613, 645
HpyAV	CCTTC	4 cut(s)	179, 523, 1144, 1251
HpyCH4III	ACNGT	5 cut(s)	348, 440, 540, 833, 1271
HpyCH4IV	ACGT	4 cut(s)	154, 323, 596, 996
HpyCH4V	TGCA	4 cut(s)	82, 290, 593, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 287, 1178
HpyF3I	CTNAG	5 cut(s)	581, 716, 753, 948, 1065
HpySE526I	ACGT	4 cut(s)	154, 323, 596, 996
Hsp92II	CATG	6 cut(s)	18, 491, 643, 882, 968, 1292
Ksp22I	TGATCA	1 cut(s)	1285
Kzo9I	GATC	8 cut(s)	114, 712, 733, 787, 967, 1060, 1222, 1285
LguI	GCTCTTC	2 cut(s)	120, 1171
LmnI	GCTCC	3 cut(s)	31, 489, 850
LweI	GCATC	4 cut(s)	256, 580, 753, 1111
MaeI	CTAG	3 cut(s)	30, 53, 608
MaeII	ACGT	4 cut(s)	154, 323, 596, 996
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	8 cut(s)	116, 714, 735, 789, 969, 1062, 1224, 1287
MboI	GATC	8 cut(s)	114, 712, 733, 787, 967, 1060, 1222, 1285
MflI	RGATCY	2 cut(s)	712, 787
MluCI	AATT	9 cut(s)	249, 360, 416, 514, 768, 780, 907, 987, 1050
MlyI	GAGTC	3 cut(s)	553, 623, 922
MmeI	TCCRAC	1 cut(s)	192
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	9 cut(s)	162, 204, 405, 443, 678, 687, 981, 990, 1049
MspA1I	CMGCKG	1 cut(s)	215
MspCI	CTTAAG	1 cut(s)	980
Mva1269I	GAATGC	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	186, 287, 1178
NcoI	CCATGG	1 cut(s)	878
NdeII	GATC	8 cut(s)	114, 712, 733, 787, 967, 1060, 1222, 1285
NlaIII	CATG	6 cut(s)	18, 491, 643, 882, 968, 1292
NlaIV	GGNNCC	2 cut(s)	199, 1262
NspI	RCATGY	1 cut(s)	643
NspV	TTCGAA	1 cut(s)	123
PagI	TCATGA	1 cut(s)	1288
PceI	AGGCCT	1 cut(s)	586
PciSI	GCTCTTC	2 cut(s)	120, 1171
PcsI	WCGNNNNNNNCGW	1 cut(s)	1002
PctI	GAATGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	764
PleI	GAGTC	3 cut(s)	553, 623, 922
PpsI	GAGTC	3 cut(s)	553, 623, 922
Ppu21I	YACGTR	1 cut(s)	997
PshAI	GACNNNNGTC	1 cut(s)	326
PsiI	TTATAA	2 cut(s)	870, 912
PspN4I	GGNNCC	2 cut(s)	199, 1262
PspPI	GGNCC	3 cut(s)	328, 452, 875
PstNI	CAGNNNCTG	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	712, 787
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	3 cut(s)	345, 644, 995
RsaNI	GTAC	3 cut(s)	344, 643, 994
SapI	GCTCTTC	2 cut(s)	120, 1171
SaqAI	TTAA	9 cut(s)	162, 204, 405, 443, 678, 687, 981, 990, 1049
Sau3AI	GATC	8 cut(s)	114, 712, 733, 787, 967, 1060, 1222, 1285
Sau96I	GGNCC	3 cut(s)	328, 452, 875
SchI	GAGTC	3 cut(s)	553, 623, 922
SfaNI	GCATC	4 cut(s)	256, 580, 753, 1111
SfuI	TTCGAA	1 cut(s)	123
SinI	GGWCC	3 cut(s)	328, 452, 875
SmlI	CTYRAG	1 cut(s)	980
SmoI	CTYRAG	1 cut(s)	980
Sse9I	AATT	9 cut(s)	249, 360, 416, 514, 768, 780, 907, 987, 1050
SseBI	AGGCCT	1 cut(s)	586
SsiI	CCGC	1 cut(s)	1264
SspMI	CTAG	3 cut(s)	30, 53, 608
StuI	AGGCCT	1 cut(s)	586
StyI	CCWWGG	3 cut(s)	505, 878, 932
TaaI	ACNGT	5 cut(s)	348, 440, 540, 833, 1271
TaiI	ACGT	4 cut(s)	157, 326, 599, 999
TaqI	TCGA	6 cut(s)	123, 1005, 1086, 1174, 1225, 1231
TasI	AATT	9 cut(s)	249, 360, 416, 514, 768, 780, 907, 987, 1050
TatI	WGTACW	1 cut(s)	642
TfiI	GAWTC	1 cut(s)	764
Tru1I	TTAA	9 cut(s)	162, 204, 405, 443, 678, 687, 981, 990, 1049
Tru9I	TTAA	9 cut(s)	162, 204, 405, 443, 678, 687, 981, 990, 1049
TscAI	CASTG	3 cut(s)	187, 427, 545
TspDTI	ATGAA	3 cut(s)	86, 565, 834
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	3 cut(s)	187, 427, 545
Vha464I	CTTAAG	1 cut(s)	980
VpaK11BI	GGWCC	3 cut(s)	328, 452, 875
XapI	RAATTY	3 cut(s)	249, 416, 780
XceI	RCATGY	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	3 cut(s)	30, 53, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.