Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002902

Physical Location & Seq

Genomic Coordinates Forward (+)

72181832 .. 72186324

Gene Structure 4493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0603400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1908 bp

ATGCAATACAGAGTAGCGGTGAACTACTTGAGTATTGAGCTCCAAAGGAACCCCGGTAGGCTCCGATCTACAGAAGCCCTCAAATTCATAGTGTTGCCGTCGCAGGAGTTTTCTCCACGCGCCGCCGCCATTCCATATACTATTTCGATTTCGTCGGGAACGGTGTTCGATCAGCTTCTTTGTGACGATGACTCAGATTTGGTGTCATTGGGACCTCGCTCTAGTTTTTCAATAGATCCGTCATGGAACCTGAAGACTGCAACAGACTACCCTTTTGTCCTTGTGATGGCAATTGATTTGGTGGCTGAGATCAAGGAATTAAAAGAGAAAAAACAGATAGAGGACGATATTCTTCTGGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATCTGGAGTATGAATACCTTGATATCAGCATTCATGAGGACTTGTATAAACTTGTCGAATATTCATGTGAAGAGCTTAGCTCGACGAAAGAACAGTTGAATAAGGCTATGAGACTTTATACTACCTTTTTGGAGCCAATGTTGGGTATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGACAAAGCTAGGAAGGGGCCTATGAATTGTACTGCATCAAGCAATGGAGAAAGTGATGGAAGTCCTGGTGGTGAGACTACCATGGTAAATTTTAAGCAGCCTAAATCTGGGGGTAATGAAGATGAAAATGCTCTAGCAGATGGGGCAAGTTCTAGGAATAGTTTGGCTAATGGGGATACCTTAGCCAAAGAAGATGGCAGTTGCGACGCAGATAATGCCTGGAGGGATGATTCAATCTGTAATAACATTTGGGTAGAGAAAGAAGTCAAAGAACAAAAGAATATGAGTATCCCTGATAAAATGCATGGGTCAAGTAAACCGGTTGCCTCCATTGATCGAGTAGGCAATTCCAATGCATCATTCGCAGTTGGAGGAGAAAATAACCATGGAAGAATCAGCTTGGAAGTGACATCAGGGTCTGTTGCAACTGCCTCAAGACCCTACGACTCCATTAGTGAAAATGAGCAGTCAAAGAAAACTAATACTGACACTGCTGTTCCTTCATCAGAGGGTGGTGATATTGTAAAACCTGCTTCATTTGGCAATGGGGTGATTACAGAAAGCACTAAAGTCAACAGTCGTCATGAAGAATCTGTTGGGCCCTCTAAAATTGAGAAGGAAGAAGGTGAATTATCACCTGTCGGTGATTATGGGGAGGATAACTTCGTTGTCTCTGGAGACGCTGGGGTGCTGGCTTTGCCTAAGGAAAACCATGGTGTTGAAAGGCAATATCAATCTGGAAACGGGGAAGAAATTTGCTCTCAGGATGCTGGGGAAAATGATGCAGACGCTGATGATGAAAACAGTGAAAATGTTTCTGAGGCTGGTGAAGATGCCTCTGGCAGTGAGACAGCTGGTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGAGGATGCTGAACATGATGACGTTGATGGTAAGGCTGAGAGTGAAGGTGAGGCTGAAGGGATGGCTGATGGGCACCTTGTTGGAGATGGCTGTTCTTTGCAATTGCCAGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATATTTTATACGAAAGGATTTTATCTGCAAAATCAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCAGATCTTTATGGCAGGTTTATGAGTGCACTGTACAACTTGCTTGATGGATCTGCTGATAATGCAAAATTTGAGGATGAATGCCGAGCTATTATTGGAAATCAGTCGTACATCTTATTCACATTGGACAAGTTAATATATAAATTTGTTAAACAGCTTCAAACACCTAACACCAAGTGTGGGAGCTTCTCCCCATTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009812 GO:0009987 GO:0010204 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0031984 GO:0033554 GO:0034050 GO:0042175 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0080134 GO:0098542 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

635

Amino Acids

68.87

Weight (kDa)

4.48

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sin3a_C	PF16879	533 - 623	8e-16	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08450 AT1G08450 AT1G08450
fragaria_vesca	FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_1g23470 FvH4_6g00230 FvH4_6g00230 FvH4_6g00230
malus_domestica	MD04G1045300.v1.1 MD04G1247000.v1.1 MD12G1263200.v1.1
prunus_persica	Prupe.1G198500_v2.0.a1 Prupe.6G363200_v2.0.a1
pyrus_communis	pycom04g21770 pycom12g24070
rosa_chinensis	RchiOBHm_Chr2g0118841 RchiOBHm_Chr3g0447601
rosa_laevigata	RLG00000018425 RLG00000025985
rosa_multiflora	Rmu_sc0001814.1_g000009 Rmu_sc0003550.1_g000005
rosa_roxburghii	Rroxscaffold_2G00125130 Rroxscaffold_6G00425810
rosa_rugosa	Rorug02G0219200 Rorug02G0603400
rosa_samantha	Rh2AG276300 Rh2BG288100 Rh2DG283200 Rh2DG302300 Rh3AG003600 Rh3BG003100 Rh3CG003400 Rh3DG003400
rosa_wichuraiana	Rw2G021990 Rw3G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	997
Acc36I	ACCTGC	2 cut(s)	1120, 1710
AccB1I	GGYRCC	1 cut(s)	1545
AccII	CGCG	1 cut(s)	120
AciI	CCGC	3 cut(s)	17, 123, 126
AclI	AACGTT	1 cut(s)	1585
AclWI	GGATC	2 cut(s)	230, 1762
AcsI	RAATTY	6 cut(s)	83, 670, 1335, 1654, 1772, 1847
AcuI	CTGAAG	2 cut(s)	272, 1548
AdeI	CACNNNGTG	1 cut(s)	1881
AfaI	GTAC	3 cut(s)	613, 1739, 1814
AfiI	CCNNNNNNNGG	4 cut(s)	286, 536, 689, 1884
AgeI	ACCGGT	1 cut(s)	901
AgsI	TTSAA	5 cut(s)	231, 493, 816, 1304, 1865
AjnI	CCWGG	2 cut(s)	646, 800
AjuI	GAANNNNNNNTTGG	4 cut(s)	926, 958, 1161, 1193
Alw21I	GWGCWC	2 cut(s)	42, 1735
Alw26I	GTCTC	5 cut(s)	499, 650, 1254, 1258, 1424
Alw44I	GTGCAC	1 cut(s)	1731
AlwI	GGATC	2 cut(s)	230, 1762
AlwNI	CAGNNNCTG	2 cut(s)	1001, 1373
Ama87I	CYCGRG	1 cut(s)	1452
AoxI	GGCC	3 cut(s)	551, 599, 1181
ApaI	GGGCCC	1 cut(s)	1185
ApaLI	GTGCAC	1 cut(s)	1731
ApeKI	GCWGC	2 cut(s)	365, 679
ApoI	RAATTY	6 cut(s)	83, 670, 1335, 1654, 1772, 1847
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AsiGI	ACCGGT	1 cut(s)	901
Asp700I	GAANNNNTTC	1 cut(s)	1587
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	4 cut(s)	212, 599, 1181, 1182
AsuC2I	CCSGG	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	1452
AvaII	GGWCC	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	1284
BaeGI	GKGCMC	3 cut(s)	1185, 1548, 1735
BanI	GGYRCC	1 cut(s)	1545
BanII	GRGCYC	2 cut(s)	42, 1185
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	2 cut(s)	42, 1735
BbvI	GCAGC	2 cut(s)	352, 691
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	648, 802
BciVI	GTATCC	2 cut(s)	751, 881
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	5 cut(s)	499, 650, 1254, 1258, 1424
BfaI	CTAG	4 cut(s)	222, 591, 716, 735
BfmI	CTRYAG	2 cut(s)	69, 384
BfuAI	ACCTGC	2 cut(s)	1120, 1710
BfuI	GTATCC	2 cut(s)	751, 881
BglII	AGATCT	1 cut(s)	1708
BisI	GCNGC	4 cut(s)	123, 126, 366, 680
BlpI	GCTNAGC	1 cut(s)	470
BlsI	GCNGC	4 cut(s)	124, 127, 367, 681
Bme1390I	CCNGG	3 cut(s)	54, 648, 802
Bme18I	GGWCC	1 cut(s)	212
BmeT110I	CYCGRG	1 cut(s)	1452
BmgT120I	GGNCC	4 cut(s)	212, 599, 1181, 1182
BmiI	GGNNCC	8 cut(s)	50, 62, 213, 248, 528, 600, 1183, 1547
BmrFI	CCNGG	3 cut(s)	54, 648, 802
BmsI	GCATC	6 cut(s)	626, 947, 1339, 1354, 1405, 1468
BpiI	GAAGAC	1 cut(s)	260
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	4 cut(s)	419, 823, 1278, 1689
Bpu10I	CCTNAGC	1 cut(s)	763
Bpu1102I	GCTNAGC	1 cut(s)	470
BpuEI	CTTGAG	2 cut(s)	49, 1000
BpuMI	CCSGG	1 cut(s)	54
BsaJI	CCNNGG	5 cut(s)	52, 663, 967, 1294, 1689
BsaWI	WCCGGW	1 cut(s)	901
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	4 cut(s)	286, 536, 689, 1884
Bse118I	RCCGGY	1 cut(s)	901
Bse21I	CCTNAGG	1 cut(s)	1284
Bse3DI	GCAATG	2 cut(s)	631, 1132
BseBI	CCWGG	2 cut(s)	648, 802
BseDI	CCNNGG	5 cut(s)	52, 663, 967, 1294, 1689
BseGI	GGATG	7 cut(s)	574, 814, 1354, 1483, 1539, 1699, 1786
BseLI	CCNNNNNNNGG	4 cut(s)	286, 536, 689, 1884
BseMI	GCAATG	2 cut(s)	631, 1132
BseMII	CTCAG	5 cut(s)	207, 297, 1358, 1392, 1500
BseRI	GAGGAG	3 cut(s)	969, 1484, 1487
BseSI	GKGCMC	3 cut(s)	1185, 1548, 1735
BseXI	GCAGC	2 cut(s)	352, 691
BseYI	CCCAGC	2 cut(s)	1265, 1352
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	553, 601, 1183
BshNI	GGYRCC	1 cut(s)	1545
BshTI	ACCGGT	1 cut(s)	901
BsiHKAI	GWGCWC	2 cut(s)	42, 1735
BsiHKCI	CYCGRG	1 cut(s)	1452
BsiSI	CCGG	2 cut(s)	54, 902
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	4 cut(s)	286, 536, 689, 1884
BsmAI	GTCTC	5 cut(s)	499, 650, 1254, 1258, 1424
BsmBI	CGTCTC	1 cut(s)	1254
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	2 cut(s)	423, 1790
BsnI	GGCC	3 cut(s)	553, 601, 1183
BsoBI	CYCGRG	1 cut(s)	1452
Bsp120I	GGGCCC	1 cut(s)	1181
Bsp1286I	GDGCHC	4 cut(s)	42, 1185, 1548, 1735
Bsp1407I	TGTACA	1 cut(s)	1737
Bsp143I	GATC	7 cut(s)	65, 169, 235, 309, 916, 1708, 1754
Bsp1720I	GCTNAGC	1 cut(s)	470
Bsp19I	CCATGG	3 cut(s)	663, 967, 1294
BspACI	CCGC	3 cut(s)	17, 123, 126
BspANI	GGCC	3 cut(s)	553, 601, 1183
BspCNI	CTCAG	5 cut(s)	206, 298, 1357, 1393, 1501
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	2 cut(s)	427, 1165
BspLI	GGNNCC	8 cut(s)	50, 62, 213, 248, 528, 600, 1183, 1547
BspMI	ACCTGC	2 cut(s)	1120, 1710
BspPI	GGATC	2 cut(s)	230, 1762
BspQI	GCTCTTC	2 cut(s)	459, 1452
BspT107I	GGYRCC	1 cut(s)	1545
BsrDI	GCAATG	2 cut(s)	631, 1132
BsrFI	RCCGGY	1 cut(s)	901
BsrGI	TGTACA	1 cut(s)	1737
BssAI	RCCGGY	1 cut(s)	901
BssECI	CCNNGG	5 cut(s)	52, 663, 967, 1294, 1689
BssMI	GATC	7 cut(s)	65, 169, 235, 309, 916, 1708, 1754
BssT1I	CCWWGG	4 cut(s)	663, 967, 1294, 1689
Bst2UI	CCWGG	2 cut(s)	648, 802
Bst4CI	ACNGT	5 cut(s)	163, 489, 1160, 1388, 1737
Bst6I	CTCTTC	2 cut(s)	459, 1452
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstAUI	TGTACA	1 cut(s)	1737
BstC8I	GCNNGC	1 cut(s)	1275
BstDEI	CTNAG	9 cut(s)	193, 306, 470, 763, 1284, 1344, 1401, 1509, 1674
BstDSI	CCRYGG	3 cut(s)	663, 967, 1294
BstF5I	GGATG	7 cut(s)	574, 814, 1354, 1483, 1539, 1699, 1786
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	7 cut(s)	68, 172, 238, 312, 919, 1711, 1757
BstMAI	GTCTC	5 cut(s)	499, 650, 1254, 1258, 1424
BstMBI	GATC	7 cut(s)	65, 169, 235, 309, 916, 1708, 1754
BstMWI	GCNNNNNNNGC	6 cut(s)	365, 725, 797, 944, 1279, 1766
BstNI	CCWGG	2 cut(s)	648, 802
BstSCI	CCNGG	3 cut(s)	52, 646, 800
BstSFI	CTRYAG	2 cut(s)	69, 384
BstSLI	GKGCMC	3 cut(s)	1185, 1548, 1735
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	352, 691
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	3 cut(s)	235, 1708, 1754
BstYI	RGATCY	3 cut(s)	235, 1708, 1754
Bsu36I	CCTNAGG	1 cut(s)	1284
BsuI	GTATCC	2 cut(s)	751, 881
BsuRI	GGCC	3 cut(s)	553, 601, 1183
BtgI	CCRYGG	3 cut(s)	663, 967, 1294
BtsCI	GGATG	7 cut(s)	574, 814, 1354, 1483, 1539, 1699, 1786
BtsI	GCAGTG	2 cut(s)	1071, 1432
BtsIMutI	CAGTG	4 cut(s)	1071, 1393, 1432, 1733
BveI	ACCTGC	2 cut(s)	1120, 1710
Cac8I	GCNNGC	1 cut(s)	1275
CaiI	CAGNNNCTG	2 cut(s)	1001, 1373
CciI	TCATGA	2 cut(s)	427, 1165
CfoI	GCGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	901
Cfr13I	GGNCC	4 cut(s)	212, 599, 1181, 1182
CseI	GACGC	3 cut(s)	797, 1271, 1379
Csp6I	GTAC	3 cut(s)	612, 1738, 1813
CspAI	ACCGGT	1 cut(s)	901
CviQI	GTAC	3 cut(s)	612, 1738, 1813
DdeI	CTNAG	9 cut(s)	193, 306, 470, 763, 1284, 1344, 1401, 1509, 1674
DpnI	GATC	7 cut(s)	67, 171, 237, 311, 918, 1710, 1756
DpnII	GATC	7 cut(s)	65, 169, 235, 309, 916, 1708, 1754
DraIII	CACNNNGTG	1 cut(s)	1881
DrdI	GACNNNNNNGTC	1 cut(s)	997
DseDI	GACNNNNNNGTC	1 cut(s)	997
Eam1104I	CTCTTC	2 cut(s)	459, 1452
EarI	CTCTTC	2 cut(s)	459, 1452
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	4 cut(s)	663, 967, 1294, 1689
Eco24I	GRGCYC	2 cut(s)	42, 1185
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	272, 1548
Eco81I	CCTNAGG	1 cut(s)	1284
Eco88I	CYCGRG	1 cut(s)	1452
EcoICRI	GAGCTC	1 cut(s)	40
EcoO109I	RGGNCCY	3 cut(s)	212, 599, 1182
EcoRII	CCWGG	2 cut(s)	646, 800
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	4 cut(s)	663, 967, 1294, 1689
EcoT22I	ATGCAT	2 cut(s)	888, 940
EcoT38I	GRGCYC	2 cut(s)	42, 1185
ErhI	CCWWGG	4 cut(s)	663, 967, 1294, 1689
Esp3I	CGTCTC	1 cut(s)	1254
FaqI	GGGAC	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	123, 126, 366, 680
FokI	GGATG	7 cut(s)	581, 821, 1361, 1490, 1546, 1706, 1793
FriOI	GRGCYC	2 cut(s)	42, 1185
Fsp4HI	GCNGC	4 cut(s)	123, 126, 366, 680
FspBI	CTAG	4 cut(s)	222, 591, 716, 735
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	4 cut(s)	123, 126, 366, 680
GsaI	CCCAGC	2 cut(s)	1269, 1356
GsuI	CTGGAG	4 cut(s)	419, 823, 1278, 1689
HaeIII	GGCC	3 cut(s)	553, 601, 1183
HapII	CCGG	2 cut(s)	54, 902
HgaI	GACGC	3 cut(s)	797, 1271, 1379
HhaI	GCGC	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	1156
HindII	GTYRAC	1 cut(s)	1156
HinfI	GANTC	5 cut(s)	191, 812, 975, 1028, 1172
HpaII	CCGG	2 cut(s)	54, 902
Hpy166II	GTNNAC	5 cut(s)	22, 583, 899, 1156, 1733
Hpy188I	TCNGA	5 cut(s)	65, 196, 565, 1090, 1402
Hpy8I	GTNNAC	5 cut(s)	22, 583, 899, 1156, 1733
Hpy99I	CGWCG	4 cut(s)	103, 157, 481, 791
HpyAV	CCTTC	7 cut(s)	555, 589, 1092, 1192, 1199, 1511, 1523
HpyCH4III	ACNGT	5 cut(s)	163, 489, 1160, 1388, 1737
HpyCH4IV	ACGT	2 cut(s)	1494, 1585
HpyF10VI	GCNNNNNNNGC	6 cut(s)	365, 725, 797, 944, 1279, 1766
HpyF3I	CTNAG	9 cut(s)	193, 306, 470, 763, 1284, 1344, 1401, 1509, 1674
HpySE526I	ACGT	2 cut(s)	1494, 1585
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	7 cut(s)	65, 169, 235, 309, 916, 1708, 1754
LguI	GCTCTTC	2 cut(s)	459, 1452
LmnI	GCTCC	5 cut(s)	45, 66, 526, 1664, 1887
Lsp1109I	GCAGC	2 cut(s)	352, 691
LweI	GCATC	6 cut(s)	626, 947, 1339, 1354, 1405, 1468
MaeI	CTAG	4 cut(s)	222, 591, 716, 735
MaeII	ACGT	2 cut(s)	1494, 1585
MaeIII	GTNAC	2 cut(s)	182, 988
MalI	GATC	7 cut(s)	67, 171, 237, 311, 918, 1710, 1756
MboI	GATC	7 cut(s)	65, 169, 235, 309, 916, 1708, 1754
MfeI	CAATTG	2 cut(s)	291, 1574
MflI	RGATCY	3 cut(s)	235, 1708, 1754
MhlI	GDGCHC	4 cut(s)	42, 1185, 1548, 1735
MlyI	GAGTC	2 cut(s)	185, 1022
MmeI	TCCRAC	2 cut(s)	931, 1534
Mph1103I	ATGCAT	2 cut(s)	888, 940
MroXI	GAANNNNTTC	1 cut(s)	1587
MseI	TTAA	4 cut(s)	320, 675, 1838, 1854
MspA1I	CMGCKG	1 cut(s)	1436
MspI	CCGG	2 cut(s)	54, 902
MspR9I	CCNGG	3 cut(s)	54, 648, 802
MunI	CAATTG	2 cut(s)	291, 1574
Mva1269I	GAATGC	2 cut(s)	423, 1790
MvaI	CCWGG	2 cut(s)	648, 802
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	6 cut(s)	365, 725, 797, 944, 1279, 1766
NciI	CCSGG	1 cut(s)	54
NcoI	CCATGG	3 cut(s)	663, 967, 1294
NdeII	GATC	7 cut(s)	65, 169, 235, 309, 916, 1708, 1754
NlaIV	GGNNCC	8 cut(s)	50, 62, 213, 248, 528, 600, 1183, 1547
NmeAIII	GCCGAG	2 cut(s)	529, 1814
NmuCI	GTSAC	2 cut(s)	182, 988
NsiI	ATGCAT	2 cut(s)	888, 940
PagI	TCATGA	2 cut(s)	427, 1165
PciSI	GCTCTTC	2 cut(s)	459, 1452
PctI	GAATGC	2 cut(s)	423, 1790
PdmI	GAANNNNTTC	1 cut(s)	1587
PfeI	GAWTC	3 cut(s)	812, 975, 1172
PinAI	ACCGGT	1 cut(s)	901
PkrI	GCNGC	4 cut(s)	124, 127, 367, 681
PleI	GAGTC	2 cut(s)	185, 1022
PpsI	GAGTC	2 cut(s)	185, 1022
PpuMI	RGGWCCY	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	42
Psp1406I	AACGTT	1 cut(s)	1585
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	646, 800
PspFI	CCCAGC	2 cut(s)	1265, 1352
PspGI	CCWGG	2 cut(s)	646, 800
PspN4I	GGNNCC	8 cut(s)	50, 62, 213, 248, 528, 600, 1183, 1547
PspOMI	GGGCCC	1 cut(s)	1181
PspPI	GGNCC	4 cut(s)	212, 599, 1181, 1182
PspPPI	RGGWCCY	1 cut(s)	212
PstNI	CAGNNNCTG	2 cut(s)	1001, 1373
PsuI	RGATCY	3 cut(s)	235, 1708, 1754
PvuII	CAGCTG	1 cut(s)	1436
RsaI	GTAC	3 cut(s)	613, 1739, 1814
RsaNI	GTAC	3 cut(s)	612, 1738, 1813
SacI	GAGCTC	1 cut(s)	42
SapI	GCTCTTC	2 cut(s)	459, 1452
SaqAI	TTAA	4 cut(s)	320, 675, 1838, 1854
SatI	GCNGC	4 cut(s)	123, 126, 366, 680
Sau3AI	GATC	7 cut(s)	65, 169, 235, 309, 916, 1708, 1754
Sau96I	GGNCC	4 cut(s)	212, 599, 1181, 1182
SchI	GAGTC	2 cut(s)	185, 1022
ScrFI	CCNGG	3 cut(s)	54, 648, 802
SduI	GDGCHC	4 cut(s)	42, 1185, 1548, 1735
SfaNI	GCATC	6 cut(s)	626, 947, 1339, 1354, 1405, 1468
SfcI	CTRYAG	2 cut(s)	69, 384
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	28, 1015
SmoI	CTYRAG	2 cut(s)	28, 1015
SsiI	CCGC	3 cut(s)	17, 123, 126
SspI	AATATT	1 cut(s)	455
SspMI	CTAG	4 cut(s)	222, 591, 716, 735
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	3 cut(s)	52, 646, 800
StyI	CCWWGG	4 cut(s)	663, 967, 1294, 1689
TaaI	ACNGT	5 cut(s)	163, 489, 1160, 1388, 1737
TaiI	ACGT	2 cut(s)	1497, 1588
TaqI	TCGA	5 cut(s)	146, 168, 450, 476, 919
TatI	WGTACW	2 cut(s)	611, 1737
TauI	GCSGC	2 cut(s)	125, 128
TfiI	GAWTC	3 cut(s)	812, 975, 1172
Tru1I	TTAA	4 cut(s)	320, 675, 1838, 1854
Tru9I	TTAA	4 cut(s)	320, 675, 1838, 1854
TscAI	CASTG	4 cut(s)	1078, 1393, 1432, 1740
TseFI	GTSAC	2 cut(s)	182, 988
TseI	GCWGC	2 cut(s)	365, 679
Tsp45I	GTSAC	2 cut(s)	182, 988
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	4 cut(s)	1078, 1393, 1432, 1740
VneI	GTGCAC	1 cut(s)	1731
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	6 cut(s)	83, 670, 1335, 1654, 1772, 1847
XmnI	GAANNNNTTC	1 cut(s)	1587
XspI	CTAG	4 cut(s)	222, 591, 716, 735
Zsp2I	ATGCAT	2 cut(s)	888, 940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.