RLG00000025985

Calreticulin-3-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
49643106 .. 49646568
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025985

Sequence Viewer

Length: 1290 bp
ATGGCAAAGCAGCTTAAGCTTCAAGGGGGGCTCTTTTTGCTGATAGCACTCTCCTCACTTTGCTTCAACTTCCATTTCCATTGTTTACCCGCACACGCAGAAATCATTTTTGAAGAGCGTTTCGAAGATGGGTGGAAAAGCCGTTGGGTTCAGTCCGACTGGAAAAGAAGTGAAGGTAAAGCAGGTTACTTTAAACATGCTGCTGGAAAGTGGCACGGAGACCCAGATGATAAAGGAATTCAGACATCTAGTGATGCCAAACATTTTGCCATATCTGCAAAGATACCGGAGTTCTCTAACAAGAACAGAACGTTGGTCCTCCAATATTCTGTAAGGTTTGAGCAGGAAATTGAATGCGGTGGGGGTTACATAAAGCTTATGTCTGGATTTGTTAATCAGAAGAAATTCAGCGGGGATACTCCTTACAGTTTAATGTTCGGACCAGATATATGTGGAACGGACACAAAGAAACTCCACGTTATACTCTCCTACCAAGGCCAGAATTACCCCATCAAGAAGGATTTGCAGTGTGAAACTGACAAGTTAACTCATTTCTACACATTTATTCTTAGGCCTGATGCAACTTATAGTGTCCTCGTTGACAATAGAGAAAGGGACTCTGGAAGCATGTATACAGACTGGGATATTCTTCCACCGAGAAAGATCAAAGATGTCAATGCAAAGAAGCCTGCAGACTGGGATATGAGAGAATATATTGATGATCCTAATGACATCAAGCCTGAGGGATATGATTCAATTCCAAAAGAAATTCCAGATCCAACAGCTAAAAAGCCCGCTGACTGGGATGAAGACGAGAGTGGTCTATGGAGAGCTCCAAAGGTACCAAATCCAGCTTACAAAGGACCATGGAGACGCAAGAGAGTCAAGAACCCAAACTATAAAGGCAAATGGAAAACTCCTTGGATTGATAATCCAGAGTTTGAAGATGACCCTGATCTTTATGTGCTTAAGCCAATTAAGTATGTGGGGATTGAGGTTTGGCAGGTAAAGGCTGGTTCAGTTTTCGACAACATTTTAATTTGTGATGAACCAGAATATGCAAAAAAAGTTGTTGAGGAAGTATTTGCTAATAGAGAGGCTGAAAAGGAGGCTTTTGAAGAAGCAGAGAAACGGAGGAAAGCACAAGAGGAAGAGGAAGCTCAAAGAGCAAGAGAAGAAGGTGAAAGGAGGAGACGAGAAAGGGGTCATGATCGACGGTATCGGGACAGATATAGAGACAAATACAGAAGGCATCGCGATTGGGACGATTATGATCATGATGAGCTATGA

Protein Analysis

430

Amino Acids

50.54

Weight (kDa)

6.32

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 37 - 273 8.7e-58 Calreticulin family
Calreticulin PF00262 274 - 347 3.4e-19 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 173, 994
Acc65I GGTACC 1 cut(s) 841
AccB1I GGYRCC 1 cut(s) 841
AccI GTMKAC 1 cut(s) 632
AccII CGCG 1 cut(s) 1257
AciI CCGC 4 cut(s) 90, 357, 411, 795
AclI AACGTT 1 cut(s) 311
AclWI GGATC 2 cut(s) 716, 770
AcsI RAATTY 3 cut(s) 237, 404, 768
AfaI GTAC 1 cut(s) 843
AfiI CCNNNNNNNGG 1 cut(s) 801
AflII CTTAAG 2 cut(s) 14, 968
AgsI TTSAA 7 cut(s) 23, 67, 113, 353, 756, 944, 1118
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 8 cut(s) 13, 19, 376, 785, 833, 854, 1160, 1285
AluI AGCT 8 cut(s) 13, 19, 376, 785, 833, 854, 1160, 1285
Alw21I GWGCWC 1 cut(s) 835
Alw26I GTCTC 4 cut(s) 213, 865, 1186, 1230
AlwI GGATC 2 cut(s) 716, 770
AoxI GGCC 2 cut(s) 496, 572
ApeKI GCWGC 2 cut(s) 10, 200
ApoI RAATTY 3 cut(s) 237, 404, 768
Asp700I GAANNNNTTC 1 cut(s) 404
Asp718I GGTACC 1 cut(s) 841
AspS9I GGNCC 3 cut(s) 316, 440, 863
AsuHPI GGTGA 1 cut(s) 1193
AsuII TTCGAA 1 cut(s) 123
AvaII GGWCC 3 cut(s) 316, 440, 863
AxyI CCTNAGG 1 cut(s) 741
BaeI ACNNNNGTAYC 2 cut(s) 275, 308
BanI GGYRCC 1 cut(s) 841
BanII GRGCYC 2 cut(s) 33, 835
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
BbsI GAAGAC 1 cut(s) 816
Bbv12I GWGCWC 1 cut(s) 835
BbvI GCAGC 2 cut(s) 22, 187
BccI CCATC 2 cut(s) 122, 518
BceAI ACGGC 1 cut(s) 126
BciVI GTATCC 1 cut(s) 409
BclI TGATCA 1 cut(s) 1273
BcoDI GTCTC 4 cut(s) 213, 865, 1186, 1230
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 690
BfrI CTTAAG 2 cut(s) 14, 968
BfuAI ACCTGC 2 cut(s) 173, 994
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 2 cut(s) 11, 201
BlsI GCNGC 2 cut(s) 12, 202
Bme18I GGWCC 3 cut(s) 316, 440, 863
BmgT120I GGNCC 3 cut(s) 316, 440, 863
BmiI GGNNCC 1 cut(s) 843
BmrI ACTGGG 3 cut(s) 649, 706, 811
BmsI GCATC 3 cut(s) 244, 568, 1261
BmuI ACTGGG 3 cut(s) 649, 706, 811
BpiI GAAGAC 1 cut(s) 816
Bpu14I TTCGAA 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 1272
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 493, 866, 920
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 801
Bse1I ACTGG 4 cut(s) 164, 644, 701, 806
Bse21I CCTNAGG 1 cut(s) 741
Bse8I GATNNNNATC 1 cut(s) 1272
BseDI CCNNGG 3 cut(s) 493, 866, 920
BseGI GGATG 1 cut(s) 811
BseJI GATNNNNATC 1 cut(s) 1272
BseLI CCNNNNNNNGG 1 cut(s) 801
BseMII CTCAG 1 cut(s) 732
BseNI ACTGG 4 cut(s) 164, 644, 701, 806
BseRI GAGGAG 2 cut(s) 43, 1204
BseXI GCAGC 2 cut(s) 22, 187
Bsh1236I CGCG 1 cut(s) 1257
BshFI GGCC 2 cut(s) 498, 574
BshNI GGYRCC 1 cut(s) 841
BsiHKAI GWGCWC 1 cut(s) 835
BsiSI CCGG 1 cut(s) 287
BslFI GGGAC 3 cut(s) 629, 1238, 1277
BslI CCNNNNNNNGG 1 cut(s) 801
BsmAI GTCTC 4 cut(s) 213, 865, 1186, 1230
BsmBI CGTCTC 2 cut(s) 865, 1186
BsmFI GGGAC 3 cut(s) 629, 1238, 1277
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 2 cut(s) 498, 574
Bso31I GGTCTC 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 33, 835
Bsp143I GATC 6 cut(s) 663, 721, 775, 955, 1210, 1273
Bsp19I CCATGG 1 cut(s) 866
Bsp68I TCGCGA 1 cut(s) 1257
BspACI CCGC 4 cut(s) 90, 357, 411, 795
BspANI GGCC 2 cut(s) 498, 574
BspCNI CTCAG 1 cut(s) 733
BspFNI CGCG 1 cut(s) 1257
BspHI TCATGA 2 cut(s) 1207, 1276
BspLI GGNNCC 1 cut(s) 843
BspMAI CTGCAG 1 cut(s) 694
BspMI ACCTGC 2 cut(s) 173, 994
BspPI GGATC 2 cut(s) 716, 770
BspQI GCTCTTC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 841
BspTI CTTAAG 2 cut(s) 14, 968
BspTNI GGTCTC 1 cut(s) 213
BsrI ACTGG 4 cut(s) 164, 644, 701, 806
BssECI CCNNGG 3 cut(s) 493, 866, 920
BssMI GATC 6 cut(s) 663, 721, 775, 955, 1210, 1273
BssNAI GTATAC 1 cut(s) 633
BssT1I CCWWGG 3 cut(s) 493, 866, 920
Bst1107I GTATAC 1 cut(s) 633
Bst4CI ACNGT 2 cut(s) 428, 1218
Bst6I CTCTTC 2 cut(s) 108, 1146
BstAFI CTTAAG 2 cut(s) 14, 968
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 690, 795
BstDEI CTNAG 2 cut(s) 569, 741
BstDSI CCRYGG 1 cut(s) 866
BstF5I GGATG 1 cut(s) 811
BstFNI CGCG 1 cut(s) 1257
BstKTI GATC 6 cut(s) 666, 724, 778, 958, 1213, 1276
BstMAI GTCTC 4 cut(s) 213, 865, 1186, 1230
BstMBI GATC 6 cut(s) 663, 721, 775, 955, 1210, 1273
BstMWI GCNNNNNNNGC 4 cut(s) 16, 37, 275, 1166
BstNSI RCATGY 2 cut(s) 200, 631
BstSFI CTRYAG 1 cut(s) 690
BstUI CGCG 1 cut(s) 1257
BstV1I GCAGC 2 cut(s) 22, 187
BstV2I GAAGAC 1 cut(s) 816
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BstZ17I GTATAC 1 cut(s) 633
Bsu36I CCTNAGG 1 cut(s) 741
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 2 cut(s) 498, 574
BtgI CCRYGG 1 cut(s) 866
BtgZI GCGATG 1 cut(s) 1238
BtsCI GGATG 1 cut(s) 811
BtsI GCAGTG 1 cut(s) 533
BtsIMutI CAGTG 1 cut(s) 533
BtuMI TCGCGA 1 cut(s) 1257
BveI ACCTGC 2 cut(s) 173, 994
Cac8I GCNNGC 2 cut(s) 690, 795
CciI TCATGA 2 cut(s) 1207, 1276
Cfr13I GGNCC 3 cut(s) 316, 440, 863
CseI GACGC 1 cut(s) 882
Csp6I GTAC 1 cut(s) 842
CviAII CATG 5 cut(s) 197, 628, 867, 1208, 1277
CviQI GTAC 1 cut(s) 842
DdeI CTNAG 2 cut(s) 569, 741
DpnI GATC 6 cut(s) 665, 723, 777, 957, 1212, 1275
DpnII GATC 6 cut(s) 663, 721, 775, 955, 1210, 1273
DraI TTTAAA 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 108, 1146
EarI CTCTTC 2 cut(s) 108, 1146
Ecl136II GAGCTC 1 cut(s) 833
Eco130I CCWWGG 3 cut(s) 493, 866, 920
Eco147I AGGCCT 1 cut(s) 574
Eco24I GRGCYC 2 cut(s) 33, 835
Eco31I GGTCTC 1 cut(s) 213
Eco47I GGWCC 3 cut(s) 316, 440, 863
Eco53kI GAGCTC 1 cut(s) 833
Eco81I CCTNAGG 1 cut(s) 741
EcoICRI GAGCTC 1 cut(s) 833
EcoRI GAATTC 1 cut(s) 237
EcoT14I CCWWGG 3 cut(s) 493, 866, 920
EcoT38I GRGCYC 2 cut(s) 33, 835
ErhI CCWWGG 3 cut(s) 493, 866, 920
Esp3I CGTCTC 2 cut(s) 865, 1186
FaeI CATG 5 cut(s) 200, 631, 870, 1211, 1280
FaqI GGGAC 3 cut(s) 629, 1238, 1277
FatI CATG 5 cut(s) 196, 627, 866, 1207, 1276
FauI CCCGC 3 cut(s) 97, 404, 802
FbaI TGATCA 1 cut(s) 1273
FblI GTMKAC 1 cut(s) 632
Fnu4HI GCNGC 2 cut(s) 11, 201
FokI GGATG 1 cut(s) 818
FriOI GRGCYC 2 cut(s) 33, 835
Fsp4HI GCNGC 2 cut(s) 11, 201
FspBI CTAG 1 cut(s) 249
GluI GCNGC 2 cut(s) 11, 201
HaeIII GGCC 2 cut(s) 498, 574
HapII CCGG 1 cut(s) 287
HgaI GACGC 1 cut(s) 882
Hin1II CATG 5 cut(s) 200, 631, 870, 1211, 1280
HincII GTYRAC 2 cut(s) 546, 601
HindII GTYRAC 2 cut(s) 546, 601
HindIII AAGCTT 2 cut(s) 17, 374
HinfI GANTC 3 cut(s) 617, 752, 882
HpaI GTTAAC 1 cut(s) 546
HpaII CCGG 1 cut(s) 287
HphI GGTGA 1 cut(s) 1193
Hpy166II GTNNAC 4 cut(s) 86, 546, 601, 633
Hpy188I TCNGA 4 cut(s) 157, 243, 399, 440
Hpy8I GTNNAC 4 cut(s) 86, 546, 601, 633
Hpy99I CGWCG 1 cut(s) 1218
HpyAV CCTTC 4 cut(s) 167, 511, 1172, 1242
HpyCH4III ACNGT 2 cut(s) 428, 1218
HpyCH4IV ACGT 2 cut(s) 311, 477
HpyCH4V TGCA 6 cut(s) 278, 526, 581, 680, 692, 1061
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 37, 275, 1166
HpyF3I CTNAG 2 cut(s) 569, 741
HpySE526I ACGT 2 cut(s) 311, 477
Hsp92II CATG 5 cut(s) 200, 631, 870, 1211, 1280
KpnI GGTACC 1 cut(s) 845
Ksp22I TGATCA 1 cut(s) 1273
KspAI GTTAAC 1 cut(s) 546
Kzo9I GATC 6 cut(s) 663, 721, 775, 955, 1210, 1273
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 838
Lsp1109I GCAGC 2 cut(s) 22, 187
LweI GCATC 3 cut(s) 244, 568, 1261
MaeI CTAG 1 cut(s) 249
MaeII ACGT 2 cut(s) 311, 477
MaeIII GTNAC 2 cut(s) 185, 365
MalI GATC 6 cut(s) 665, 723, 777, 957, 1212, 1275
MboI GATC 6 cut(s) 663, 721, 775, 955, 1210, 1273
MboII GAAGA 9 cut(s) 125, 137, 412, 641, 821, 956, 1130, 1163, 1187
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 33, 835
MluCI AATT 8 cut(s) 237, 348, 404, 502, 756, 768, 975, 1038
MlyI GAGTC 2 cut(s) 611, 891
MmeI TCCRAC 2 cut(s) 180, 803
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 8 cut(s) 15, 192, 393, 431, 545, 969, 978, 1037
MspA1I CMGCKG 2 cut(s) 411, 797
MspCI CTTAAG 2 cut(s) 14, 968
MspI CCGG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 359
MvnI CGCG 1 cut(s) 1257
MwoI GCNNNNNNNGC 4 cut(s) 16, 37, 275, 1166
NcoI CCATGG 1 cut(s) 866
NdeII GATC 6 cut(s) 663, 721, 775, 955, 1210, 1273
NlaIII CATG 5 cut(s) 200, 631, 870, 1211, 1280
NlaIV GGNNCC 1 cut(s) 843
NruI TCGCGA 1 cut(s) 1257
NspI RCATGY 2 cut(s) 200, 631
NspV TTCGAA 1 cut(s) 123
PagI TCATGA 2 cut(s) 1207, 1276
PceI AGGCCT 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 108
PctI GAATGC 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 752
PkrI GCNGC 2 cut(s) 12, 202
PleI GAGTC 2 cut(s) 611, 890
PpsI GAGTC 2 cut(s) 611, 890
Psp124BI GAGCTC 1 cut(s) 835
Psp1406I AACGTT 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 843
PspPI GGNCC 3 cut(s) 316, 440, 863
PstI CTGCAG 1 cut(s) 694
PsuI RGATCY 1 cut(s) 775
RruI TCGCGA 1 cut(s) 1257
RsaI GTAC 1 cut(s) 843
RsaNI GTAC 1 cut(s) 842
SacI GAGCTC 1 cut(s) 835
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 8 cut(s) 15, 192, 393, 431, 545, 969, 978, 1037
SatI GCNGC 2 cut(s) 11, 201
Sau3AI GATC 6 cut(s) 663, 721, 775, 955, 1210, 1273
Sau96I GGNCC 3 cut(s) 316, 440, 863
SchI GAGTC 2 cut(s) 611, 891
SduI GDGCHC 2 cut(s) 33, 835
SfaNI GCATC 3 cut(s) 244, 568, 1261
SfcI CTRYAG 1 cut(s) 690
SfuI TTCGAA 1 cut(s) 123
SinI GGWCC 3 cut(s) 316, 440, 863
SmlI CTYRAG 2 cut(s) 14, 968
SmoI CTYRAG 2 cut(s) 14, 968
Sse9I AATT 8 cut(s) 237, 348, 404, 502, 756, 768, 975, 1038
SseBI AGGCCT 1 cut(s) 574
SsiI CCGC 4 cut(s) 90, 357, 411, 795
SspI AATATT 1 cut(s) 326
SspMI CTAG 1 cut(s) 249
SstI GAGCTC 1 cut(s) 835
StuI AGGCCT 1 cut(s) 574
StyI CCWWGG 3 cut(s) 493, 866, 920
TaaI ACNGT 2 cut(s) 428, 1218
TaiI ACGT 2 cut(s) 314, 480
TaqI TCGA 3 cut(s) 123, 1026, 1213
TasI AATT 8 cut(s) 237, 348, 404, 502, 756, 768, 975, 1038
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 8 cut(s) 15, 192, 393, 431, 545, 969, 978, 1037
Tru9I TTAA 8 cut(s) 15, 192, 393, 431, 545, 969, 978, 1037
TscAI CASTG 1 cut(s) 533
TseI GCWGC 2 cut(s) 10, 200
TspDTI ATGAA 2 cut(s) 822, 1062
TspGWI ACGGA 3 cut(s) 231, 473, 1147
TspRI CASTG 1 cut(s) 533
Vha464I CTTAAG 2 cut(s) 14, 968
VpaK11BI GGWCC 3 cut(s) 316, 440, 863
XapI RAATTY 3 cut(s) 237, 404, 768
XceI RCATGY 2 cut(s) 200, 631
XmiI GTMKAC 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.