AT1G08500

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005440
Physical Location & Seq
Forward (+)
2688880 .. 2690250
1371 bp
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UTR
Exon/CDS
Intron
AT1G08500.1

Sequence Viewer

Length: 687 bp
ATGTCGCCTTCTTGTTCATCTTGTGTCAATGTGTTACTCATCATGTGCCTTATGCTTCTGAGTTTATCAGCTGATGCGTACAAGAACTACACTGTGGGAGAGTCCACGGGATGGTTCGATATTCAAGAGAGACCCTCTGCTAATTATCAGAAATGGGCCGATTCCAAATCCTTTTCTTTGGGTGATTTCCTCATATTCAACACAGATAGCAACCATTCGGTGGTTCAGACATATGATTTCAAAACATACAAAGATTGTGATTACGACAACAATGAAAACAATGATACAACAGAGTGGTCGGCTGCAAATCCTTCAGCAACATCTCCTGTTCCCGTCTCAATAAGTGTTCCTCTTGTTAAAGAAGGTTCCAATTATTTCTTCTCGGGAAACTATGATGGCGAACAATGTAAATTCGGTCAGCATTTTATGATCAATGTAACACATGGTCAGGGCTTACCAGATTCATCATCACCAGATGATGCTGCTGCACCTGGACCTAGCGAATCCTCTCAGTCCGGTGATGATGAAGTTGCTCCTGATACCATCGTCCCGGCCAATTTCGATCATCCTAAAGATATTGAAAGTGCTGATGATGATAAAGAGGTTCATAGTAAAAAAAGTTCTTCTTCCACAACAAAAACTAGTTTGTTTTGTTTTGTCTTTATGGGGCTCTTTGCATCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

228

Amino Acids

24.9

Weight (kDa)

4.29

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 38 - 140 3e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 111, 220
AcoI YGGCCR 1 cut(s) 552
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 111, 220
AgsI TTSAA 4 cut(s) 125, 199, 241, 581
AhlI ACTAGT 1 cut(s) 641
AjnI CCWGG 1 cut(s) 490
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 2 cut(s) 124, 340
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 2 cut(s) 156, 552
ApeKI GCWGC 3 cut(s) 302, 482, 485
ApoI RAATTY 1 cut(s) 410
AspS9I GGNCC 2 cut(s) 156, 494
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 3 cut(s) 194, 462, 530
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 494
BaeI ACNNNNGTAYC 2 cut(s) 531, 564
BanII GRGCYC 1 cut(s) 672
BbvI GCAGC 3 cut(s) 289, 469, 472
BccI CCATC 3 cut(s) 105, 389, 551
BciT130I CCWGG 1 cut(s) 492
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 2 cut(s) 124, 340
BcuI ACTAGT 1 cut(s) 641
BfaI CTAG 2 cut(s) 498, 642
BisI GCNGC 3 cut(s) 303, 483, 486
BlsI GCNGC 3 cut(s) 304, 484, 487
Bme1390I CCNGG 2 cut(s) 492, 551
Bme18I GGWCC 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 156, 494
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 2 cut(s) 492, 551
BmsI GCATC 2 cut(s) 64, 469
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpuMI CCSGG 1 cut(s) 551
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 515
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 220
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 116, 565
BseLI CCNNNNNNNGG 2 cut(s) 111, 220
BseMII CTCAG 2 cut(s) 50, 524
BseXI GCAGC 3 cut(s) 289, 469, 472
BsgI GTGCAG 1 cut(s) 471
BshFI GGCC 2 cut(s) 158, 554
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 2 cut(s) 516, 551
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 2 cut(s) 111, 220
BsmAI GTCTC 2 cut(s) 124, 340
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 533
BsnI GGCC 2 cut(s) 158, 554
Bso31I GGTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 672
Bsp143I GATC 2 cut(s) 429, 562
BspANI GGCC 2 cut(s) 158, 554
BspCNI CTCAG 2 cut(s) 51, 523
BspLI GGNNCC 1 cut(s) 367
BspTNI GGTCTC 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 429, 562
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 59, 510
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 116, 565
BstKTI GATC 2 cut(s) 432, 565
BstMAI GTCTC 2 cut(s) 124, 340
BstMBI GATC 2 cut(s) 429, 562
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 490, 549
BstV1I GCAGC 3 cut(s) 289, 469, 472
BsuRI GGCC 2 cut(s) 158, 554
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 116, 565
BtsIMutI CAGTG 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 156, 494
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 43, 443
CviJI RGCY 6 cut(s) 71, 158, 302, 453, 554, 670
CviKI_1 RGCY 6 cut(s) 71, 158, 302, 453, 554, 670
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 59, 510
DpnI GATC 2 cut(s) 431, 564
DpnII GATC 2 cut(s) 429, 562
EaeI YGGCCR 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 672
Eco31I GGTCTC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 672
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 2 cut(s) 46, 446
FalI AAGNNNNNCTT 2 cut(s) 610, 642
FaqI GGGAC 1 cut(s) 533
FatI CATG 2 cut(s) 42, 442
FauNDI CATATG 1 cut(s) 232
FbaI TGATCA 1 cut(s) 429
Fnu4HI GCNGC 3 cut(s) 303, 483, 486
FokI GGATG 2 cut(s) 123, 552
FriOI GRGCYC 1 cut(s) 672
Fsp4HI GCNGC 3 cut(s) 303, 483, 486
FspBI CTAG 2 cut(s) 498, 642
GluI GCNGC 3 cut(s) 303, 483, 486
HaeIII GGCC 2 cut(s) 158, 554
HapII CCGG 2 cut(s) 516, 551
Hin1II CATG 2 cut(s) 46, 446
HinfI GANTC 4 cut(s) 101, 161, 461, 503
HpaII CCGG 2 cut(s) 516, 551
HphI GGTGA 3 cut(s) 194, 462, 530
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 3 cut(s) 60, 150, 228
Hpy188III TCNNGA 3 cut(s) 125, 384, 536
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 3 cut(s) 18, 321, 356
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 3 cut(s) 305, 488, 677
HpyF3I CTNAG 2 cut(s) 59, 510
Hsp92II CATG 2 cut(s) 46, 446
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 2 cut(s) 429, 562
LmnI GCTCC 1 cut(s) 538
LpnPI CCDG 9 cut(s) 339, 434, 471, 477, 486, 504, 529, 549, 564
Lsp1109I GCAGC 3 cut(s) 289, 469, 472
LweI GCATC 2 cut(s) 64, 469
MaeI CTAG 2 cut(s) 498, 642
MaeIII GTNAC 2 cut(s) 33, 436
MalI GATC 2 cut(s) 431, 564
MboI GATC 2 cut(s) 429, 562
MboII GAAGA 3 cut(s) 370, 615, 618
MhlI GDGCHC 1 cut(s) 672
MluCI AATT 4 cut(s) 142, 370, 410, 556
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 5 cut(s) 145, 200, 360, 517, 595
MseI TTAA 2 cut(s) 357, 685
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 516, 551
MspR9I CCNGG 2 cut(s) 492, 551
MvaI CCWGG 1 cut(s) 492
NciI CCSGG 1 cut(s) 551
NdeI CATATG 1 cut(s) 232
NdeII GATC 2 cut(s) 429, 562
NlaIII CATG 2 cut(s) 46, 446
NlaIV GGNNCC 1 cut(s) 367
PfeI GAWTC 3 cut(s) 161, 461, 503
PflMI CCANNNNNTGG 2 cut(s) 111, 220
PkrI GCNGC 3 cut(s) 304, 484, 487
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 2 cut(s) 156, 494
PsrI GAACNNNNNNTAC 2 cut(s) 604, 636
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 357, 685
SatI GCNGC 3 cut(s) 303, 483, 486
Sau3AI GATC 2 cut(s) 429, 562
Sau96I GGNCC 2 cut(s) 156, 494
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 492, 551
SduI GDGCHC 1 cut(s) 672
SetI ASST 5 cut(s) 73, 367, 493, 499, 606
SfaNI GCATC 2 cut(s) 64, 469
SinI GGWCC 1 cut(s) 494
SpeI ACTAGT 1 cut(s) 641
Sse9I AATT 4 cut(s) 142, 370, 410, 556
SspMI CTAG 2 cut(s) 498, 642
StyD4I CCNGG 2 cut(s) 490, 549
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 117, 561
TaqII GACCGA 1 cut(s) 404
TasI AATT 4 cut(s) 142, 370, 410, 556
TfiI GAWTC 3 cut(s) 161, 461, 503
Tru1I TTAA 2 cut(s) 357, 685
Tru9I TTAA 2 cut(s) 357, 685
TscAI CASTG 1 cut(s) 97
TseI GCWGC 3 cut(s) 302, 482, 485
TspDTI ATGAA 5 cut(s) 6, 288, 453, 540, 596
TspRI CASTG 1 cut(s) 97
Van91I CCANNNNNTGG 2 cut(s) 111, 220
VpaK11BI GGWCC 1 cut(s) 494
XapI RAATTY 1 cut(s) 410
XspI CTAG 2 cut(s) 498, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.