Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020779.1

Orthogroup ID

OG0005440

Physical Location & Seq

Genomic Coordinates Reverse (-)

677 .. 1111

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020779.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ctgtgtgattacaacaatgccggggacaatgatgcaatccaatggtcggaagcggagccgtcaaacaccgtcccacatgatgtttcggtggcggttcctttgttgaaagagggaatcacatatttcttttccggtgattatgatggcgaacagtgcaaaaatgggcagcacttcaagataaatgtgactcacggacaaggcttgccaaagactttagacaattcggcggcaggaccagcaagcagtccacaatctggcaatggtgatgatgaatcaatcccggacacaatcgtccctaatgccaacttcaatgatcccaaaccagatgacaatgacgatataaagccatctggagccgtttcattttcagttcctcatgtacaaggcaatctgattttcattgtgctcggtcttgtctacttgttatggtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

144

Amino Acids

15.39

Weight (kDa)

4.16

Isoelectric Point (pI)

22.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08500
fragaria_vesca	FvH4_5g22740
malus_domestica	MD03G1156900.v1.1 MD11G1183800.v1.1
prunus_persica	Prupe.4G270100_v2.0.a1
pyrus_communis	pycom12561g00210 pycom5153684g00100
rosa_chinensis	RchiOBHm_Chr5g0044801 RchiOBHm_Chr7g0211321
rosa_laevigata	RLG00000003010 RLG00000034298
rosa_multiflora	Rmu_sc0004567.1_g000014 Rmu_sc0010445.1_g000001 Rmu_sc0020779.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030860 Rroxscaffold_1G00036240 Rroxscaffold_3G00247930
rosa_rugosa	Rorug05G0218200 Rorug07G0125000
rosa_samantha	Rh5BG307800 Rh5CG334900 Rh5DG317900 Rh7AG257400 Rh7BG251500 Rh7CG274200 Rh7DG264400
rosa_wichuraiana	Rw5G027880 Rw5G027890 Rw7G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	3 cut(s)	53, 92, 227
AclWI	GGATC	1 cut(s)	308
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	2 cut(s)	46, 254
AgsI	TTSAA	3 cut(s)	106, 175, 310
Alw21I	GWGCWC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	2 cut(s)	22, 281
AsuHPI	GGTGA	2 cut(s)	146, 275
AvaII	GGWCC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	137, 355
BceAI	ACGGC	2 cut(s)	43, 341
BcnI	CCSGG	2 cut(s)	22, 281
BisI	GCNGC	2 cut(s)	167, 228
BlsI	GCNGC	2 cut(s)	168, 229
Bme1390I	CCNGG	2 cut(s)	22, 281
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	3 cut(s)	57, 96, 355
BmrFI	CCNGG	2 cut(s)	22, 281
BmsI	GCATC	1 cut(s)	22
BpmI	CTGGAG	1 cut(s)	372
BpuMI	CCSGG	2 cut(s)	22, 281
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 254
Bse3DI	GCAATG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	46, 254
BseMI	GCAATG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	3 cut(s)	21, 132, 281
BslFI	GGGAC	3 cut(s)	38, 56, 278
BslI	CCNNNNNNNGG	2 cut(s)	46, 254
BsmFI	GGGAC	3 cut(s)	38, 56, 278
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp1407I	TGTACA	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	3 cut(s)	53, 92, 227
BspHI	TCATGA	1 cut(s)	431
BspLI	GGNNCC	3 cut(s)	57, 96, 355
BspPI	GGATC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	265
BsrGI	TGTACA	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	313
Bst4CI	ACNGT	2 cut(s)	70, 153
BstAUI	TGTACA	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	203, 241
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 236
BstSCI	CCNGG	2 cut(s)	20, 279
BstV1I	GCAGC	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	203, 241
CciI	TCATGA	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	3 cut(s)	77, 377, 432
CviJI	RGCY	4 cut(s)	58, 201, 346, 356
CviKI_1	RGCY	4 cut(s)	58, 201, 346, 356
CviQI	GTAC	1 cut(s)	380
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	233
FaeI	CATG	3 cut(s)	80, 380, 435
FaiI	YATR	7 cut(s)	78, 121, 141, 341, 378, 427, 433
FaqI	GGGAC	3 cut(s)	38, 56, 278
FatI	CATG	3 cut(s)	76, 376, 431
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	167, 228
Fsp4HI	GCNGC	2 cut(s)	167, 228
GluI	GCNGC	2 cut(s)	167, 228
GsuI	CTGGAG	1 cut(s)	372
HapII	CCGG	3 cut(s)	21, 132, 281
Hin1II	CATG	3 cut(s)	80, 380, 435
HinfI	GANTC	3 cut(s)	114, 187, 272
HpaII	CCGG	3 cut(s)	21, 132, 281
HphI	GGTGA	2 cut(s)	146, 275
Hpy166II	GTNNAC	2 cut(s)	248, 418
Hpy188I	TCNGA	2 cut(s)	49, 393
Hpy188III	TCNNGA	3 cut(s)	175, 351, 432
Hpy8I	GTNNAC	2 cut(s)	248, 418
HpyCH4III	ACNGT	2 cut(s)	70, 153
HpyCH4V	TGCA	2 cut(s)	35, 156
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 236
Hsp92II	CATG	3 cut(s)	80, 380, 435
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	55, 353
LpnPI	CCDG	8 cut(s)	34, 145, 216, 240, 249, 294, 336, 336
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	2 cut(s)	103, 384
MspI	CCGG	3 cut(s)	21, 132, 281
MspR9I	CCNGG	2 cut(s)	22, 281
MwoI	GCNNNNNNNGC	2 cut(s)	153, 236
NciI	CCSGG	2 cut(s)	22, 281
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	3 cut(s)	80, 380, 435
NlaIV	GGNNCC	3 cut(s)	57, 96, 355
NmuCI	GTSAC	1 cut(s)	184
PagI	TCATGA	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	114, 272
PflMI	CCANNNNNTGG	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	168, 229
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspN4I	GGNNCC	3 cut(s)	57, 96, 355
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
SatI	GCNGC	2 cut(s)	167, 228
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	22, 281
SduI	GDGCHC	1 cut(s)	408
SfaNI	GCATC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	233
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	3 cut(s)	53, 92, 227
StyD4I	CCNGG	2 cut(s)	20, 279
TaaI	ACNGT	2 cut(s)	70, 153
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	379
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	114, 272
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	3 cut(s)	285, 351, 388
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.