Rmu_sc0004567.1_g000014

Blue copper protein-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004567.1
Physical Location & Seq
Reverse (-)
62769 .. 66417
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004567.1_g000014.1.cds

Sequence Viewer

Length: 1215 bp
atgattggagccaactttgaaatttggacgcgggccttatgctccgggaccacaatatggctgagcggggcccacgagcttcagttcaacaactacaagagagccaaagaggcccaaatccacgggatcgaaaccttgatctgcatcccaacttccgacggtgttcttgaaatgggttcatccggtttgatcagagagaactgggggttgatccagcaagccaagtcgttgttcgggtcagatcagcccaacccggaaacaagactgctcgagttcatcaaccggaacttctccatttttgacatcggcatcattgccggcgtgcaggaagaggatcacagctcgtacaatgttttcatcattgccgacgacaagaaacatgtttttggttctagcaagaagaagaacggagctccgaacccaaacctggacttcgcagattccgactgccagatgaaaagagggccgaagaaacggggccggaaacccgggctgggccgagacacgccgctcaaccatgtggaggcggagtggcagcagcgggagaagctcacctcacaagggcggcgttggaagcgagggatttcgagtatttatgttcatgcctacaagaaccacacagtgggcaactccttgggttggtacgataacctccaaaagcccgatgttaattaccagaaatgggctgcagccaacaacttcagcttgggagattttctcattttcaatactgatacgaaccactcggtcatccaaacctataacgtcactacatacaagctgtgtgattacaacaatgccctggacaatgatacaatccaatggtcggaaggggagccgtcaaacaccgtcccacatgatgtttcggtggcggttcctttgttgaaagagggcatcacatatttcttttccggtgattatgatggcgaacagtgcaaaaatgggcagcacttcaagataaatgtgactcacggacaaggcttgccaaagactttagacaattcggcggcaggaccagcaagcagtccacaatctggcaatggtgatgatgaatcaatcccggacacaatcgtccctaatgccaacttcaatgatcccaaaccagatgacaatgacgatataaagccatctggagccgtttcattttcagttcctcatgtacaaggcaatctgattttcattgtgctcggtcttgtctacttgttatggtcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

404

Amino Acids

44.88

Weight (kDa)

5.64

Isoelectric Point (pI)

21.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1070
AccB7I CCANNNNNTGG 3 cut(s) 57, 622, 1034
AccBSI CCGCTC 2 cut(s) 66, 511
AccI GTMKAC 1 cut(s) 1197
AccII CGCG 1 cut(s) 31
AciI CCGC 8 cut(s) 31, 66, 509, 527, 541, 565, 872, 1007
AclWI GGATC 4 cut(s) 134, 205, 342, 1088
AcsI RAATTY 1 cut(s) 21
AcuI CTGAAG 2 cut(s) 65, 685
AdeI CACNNNGTG 1 cut(s) 622
AfaI GTAC 3 cut(s) 347, 644, 1161
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 7 cut(s) 20, 88, 170, 727, 886, 955, 1090
AjnI CCWGG 2 cut(s) 426, 801
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 6 cut(s) 79, 342, 413, 550, 705, 781
AluI AGCT 6 cut(s) 79, 342, 413, 550, 705, 781
Alw21I GWGCWC 2 cut(s) 415, 1188
Alw26I GTCTC 1 cut(s) 495
AlwI GGATC 4 cut(s) 134, 205, 342, 1088
Ama87I CYCGRG 2 cut(s) 269, 488
AoxI GGCC 6 cut(s) 33, 69, 111, 464, 478, 496
ApaI GGGCCC 1 cut(s) 73
ApeKI GCWGC 5 cut(s) 535, 538, 686, 689, 946
ApoI RAATTY 1 cut(s) 21
AspS9I GGNCC 9 cut(s) 33, 48, 69, 70, 112, 464, 478, 496, 1013
AsuC2I CCSGG 5 cut(s) 46, 254, 489, 490, 1061
AsuHPI GGTGA 3 cut(s) 544, 926, 1055
AvaI CYCGRG 2 cut(s) 269, 488
AvaII GGWCC 2 cut(s) 48, 1013
BaeGI GKGCMC 1 cut(s) 73
BanII GRGCYC 2 cut(s) 73, 415
BauI CACGAG 1 cut(s) 74
Bbv12I GWGCWC 2 cut(s) 415, 1188
BbvI GCAGC 5 cut(s) 547, 550, 673, 701, 958
BccI CCATC 2 cut(s) 917, 1135
BceAI ACGGC 2 cut(s) 823, 1121
BciT130I CCWGG 2 cut(s) 428, 803
BclI TGATCA 1 cut(s) 189
BcnI CCSGG 5 cut(s) 46, 254, 489, 490, 1061
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 687
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 8 cut(s) 509, 536, 539, 566, 687, 690, 947, 1008
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 8 cut(s) 510, 537, 540, 567, 688, 691, 948, 1009
Bme1390I CCNGG 7 cut(s) 46, 254, 428, 489, 490, 803, 1061
Bme18I GGWCC 2 cut(s) 48, 1013
BmeT110I CYCGRG 2 cut(s) 269, 488
BmgT120I GGNCC 9 cut(s) 33, 48, 69, 70, 112, 464, 478, 496, 1013
BmiI GGNNCC 8 cut(s) 10, 49, 70, 71, 479, 837, 876, 1135
BmrFI CCNGG 7 cut(s) 46, 254, 428, 489, 490, 803, 1061
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 3 cut(s) 153, 318, 903
BmuI ACTGGG 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 702, 734
BpmI CTGGAG 1 cut(s) 1152
Bpu1102I GCTNAGC 1 cut(s) 62
BpuMI CCSGG 5 cut(s) 46, 254, 489, 490, 1061
BsaBI GATNNNNATC 1 cut(s) 143
BsaJI CCNNGG 4 cut(s) 121, 488, 633, 801
BsaWI WCCGGW 3 cut(s) 182, 282, 911
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 3 cut(s) 312, 360, 1045
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 2 cut(s) 428, 803
BseDI CCNNGG 4 cut(s) 121, 488, 633, 801
BseGI GGATG 3 cut(s) 144, 179, 750
BseJI GATNNNNATC 1 cut(s) 143
BseMI GCAATG 3 cut(s) 312, 360, 1045
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 5 cut(s) 547, 550, 673, 701, 958
BseYI CCCAGC 1 cut(s) 493
BsgI GTGCAG 1 cut(s) 344
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 6 cut(s) 35, 71, 113, 466, 480, 498
BsiHKAI GWGCWC 2 cut(s) 415, 1188
BsiHKCI CYCGRG 2 cut(s) 269, 488
BsiSI CCGG 9 cut(s) 45, 183, 254, 283, 318, 481, 489, 912, 1061
BslFI GGGAC 3 cut(s) 61, 836, 1058
BsmAI GTCTC 1 cut(s) 495
BsmFI GGGAC 3 cut(s) 61, 836, 1058
BsnI GGCC 6 cut(s) 35, 71, 113, 466, 480, 498
BsoBI CYCGRG 2 cut(s) 269, 488
Bsp120I GGGCCC 1 cut(s) 69
Bsp1286I GDGCHC 3 cut(s) 73, 415, 1188
Bsp1407I TGTACA 1 cut(s) 1159
Bsp143I GATC 7 cut(s) 126, 138, 189, 210, 241, 334, 1093
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 8 cut(s) 31, 66, 509, 527, 541, 565, 872, 1007
BspANI GGCC 6 cut(s) 35, 71, 113, 466, 480, 498
BspCNI CTCAG 1 cut(s) 54
BspFNI CGCG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 1211
BspLI GGNNCC 8 cut(s) 10, 49, 70, 71, 479, 837, 876, 1135
BspMAI CTGCAG 1 cut(s) 691
BspPI GGATC 4 cut(s) 134, 205, 342, 1088
BsrBI CCGCTC 2 cut(s) 66, 511
BsrDI GCAATG 3 cut(s) 312, 360, 1045
BsrFI RCCGGY 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 1159
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 4 cut(s) 121, 488, 633, 801
BssMI GATC 7 cut(s) 126, 138, 189, 210, 241, 334, 1093
BssSI CACGAG 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 633
Bst2BI CACGAG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 428, 803
Bst4CI ACNGT 4 cut(s) 161, 622, 850, 933
Bst6I CTCTTC 1 cut(s) 324
BstAUI TGTACA 1 cut(s) 1159
BstC8I GCNNGC 6 cut(s) 33, 219, 319, 323, 983, 1021
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 3 cut(s) 144, 179, 750
BstFNI CGCG 1 cut(s) 31
BstKTI GATC 7 cut(s) 129, 141, 192, 213, 244, 337, 1096
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 7 cut(s) 126, 138, 189, 210, 241, 334, 1093
BstMWI GCNNNNNNNGC 5 cut(s) 110, 547, 574, 933, 1016
BstNI CCWGG 2 cut(s) 428, 803
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 7 cut(s) 44, 252, 426, 487, 488, 801, 1059
BstSFI CTRYAG 1 cut(s) 687
BstSLI GKGCMC 1 cut(s) 73
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 5 cut(s) 547, 550, 673, 701, 958
BsuRI GGCC 6 cut(s) 35, 71, 113, 466, 480, 498
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 3 cut(s) 144, 179, 750
BtsIMutI CAGTG 2 cut(s) 627, 938
Cac8I GCNNGC 6 cut(s) 33, 219, 319, 323, 983, 1021
CciI TCATGA 1 cut(s) 1211
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 9 cut(s) 33, 48, 69, 70, 112, 464, 478, 496, 1013
Cfr9I CCCGGG 1 cut(s) 488
CseI GACGC 1 cut(s) 37
Csp6I GTAC 3 cut(s) 346, 643, 1160
CviAII CATG 6 cut(s) 380, 518, 602, 857, 1157, 1212
CviQI GTAC 3 cut(s) 346, 643, 1160
DdeI CTNAG 1 cut(s) 62
DpnI GATC 7 cut(s) 128, 140, 191, 212, 243, 336, 1095
DpnII GATC 7 cut(s) 126, 138, 189, 210, 241, 334, 1093
DraIII CACNNNGTG 1 cut(s) 622
DrdI GACNNNNNNGTC 1 cut(s) 1070
DseDI GACNNNNNNGTC 1 cut(s) 1070
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
EciI GGCGGA 1 cut(s) 542
Ecl136II GAGCTC 1 cut(s) 413
Eco130I CCWWGG 1 cut(s) 633
Eco24I GRGCYC 2 cut(s) 73, 415
Eco47I GGWCC 2 cut(s) 48, 1013
Eco53kI GAGCTC 1 cut(s) 413
Eco57I CTGAAG 2 cut(s) 65, 685
Eco88I CYCGRG 2 cut(s) 269, 488
EcoICRI GAGCTC 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 426, 801
EcoT14I CCWWGG 1 cut(s) 633
EcoT38I GRGCYC 2 cut(s) 73, 415
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 6 cut(s) 383, 521, 605, 860, 1160, 1215
FaqI GGGAC 3 cut(s) 61, 836, 1058
FatI CATG 6 cut(s) 379, 517, 601, 856, 1156, 1211
FauI CCCGC 3 cut(s) 24, 59, 534
FbaI TGATCA 1 cut(s) 189
FblI GTMKAC 1 cut(s) 1197
Fnu4HI GCNGC 8 cut(s) 509, 536, 539, 566, 687, 690, 947, 1008
FokI GGATG 3 cut(s) 131, 166, 737
FriOI GRGCYC 2 cut(s) 73, 415
Fsp4HI GCNGC 8 cut(s) 509, 536, 539, 566, 687, 690, 947, 1008
FspBI CTAG 1 cut(s) 393
GluI GCNGC 8 cut(s) 509, 536, 539, 566, 687, 690, 947, 1008
GsaI CCCAGC 1 cut(s) 497
GsuI CTGGAG 1 cut(s) 1152
HaeIII GGCC 6 cut(s) 35, 71, 113, 466, 480, 498
HapII CCGG 9 cut(s) 45, 183, 254, 283, 318, 481, 489, 912, 1061
HgaI GACGC 1 cut(s) 37
Hin1II CATG 6 cut(s) 383, 521, 605, 860, 1160, 1215
HinfI GANTC 3 cut(s) 440, 967, 1052
HpaII CCGG 9 cut(s) 45, 183, 254, 283, 318, 481, 489, 912, 1061
HphI GGTGA 3 cut(s) 544, 926, 1055
Hpy166II GTNNAC 2 cut(s) 1028, 1198
Hpy188I TCNGA 7 cut(s) 157, 194, 241, 417, 445, 829, 1173
Hpy188III TCNNGA 4 cut(s) 167, 955, 1131, 1212
Hpy8I GTNNAC 2 cut(s) 1028, 1198
Hpy99I CGWCG 2 cut(s) 161, 371
HpyAV CCTTC 1 cut(s) 824
HpyCH4III ACNGT 4 cut(s) 161, 622, 850, 933
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 4 cut(s) 144, 325, 689, 936
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 547, 574, 933, 1016
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 765
Hsp92II CATG 6 cut(s) 383, 521, 605, 860, 1160, 1215
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 7 cut(s) 126, 138, 189, 210, 241, 334, 1093
LmnI GCTCC 6 cut(s) 8, 47, 410, 418, 835, 1133
Lsp1109I GCAGC 5 cut(s) 547, 550, 673, 701, 958
LweI GCATC 3 cut(s) 153, 318, 903
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 2 cut(s) 766, 964
MalI GATC 7 cut(s) 128, 140, 191, 212, 243, 336, 1095
MbiI CCGCTC 2 cut(s) 66, 511
MboI GATC 7 cut(s) 126, 138, 189, 210, 241, 334, 1093
MboII GAAGA 4 cut(s) 341, 412, 415, 481
MhlI GDGCHC 3 cut(s) 73, 415, 1188
MluCI AATT 3 cut(s) 21, 670, 1000
MlyI GAGTC 1 cut(s) 961
MmeI TCCRAC 4 cut(s) 180, 468, 551, 807
MnlI CCTC 9 cut(s) 103, 325, 455, 517, 565, 572, 662, 883, 1164
MroNI GCCGGC 1 cut(s) 317
MseI TTAA 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 541
MspI CCGG 9 cut(s) 45, 183, 254, 283, 318, 481, 489, 912, 1061
MspR9I CCNGG 7 cut(s) 46, 254, 428, 489, 490, 803, 1061
MvaI CCWGG 2 cut(s) 428, 803
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 5 cut(s) 110, 547, 574, 933, 1016
NaeI GCCGGC 1 cut(s) 319
NciI CCSGG 5 cut(s) 46, 254, 489, 490, 1061
NdeII GATC 7 cut(s) 126, 138, 189, 210, 241, 334, 1093
NgoMIV GCCGGC 1 cut(s) 317
NlaIII CATG 6 cut(s) 383, 521, 605, 860, 1160, 1215
NlaIV GGNNCC 8 cut(s) 10, 49, 70, 71, 479, 837, 876, 1135
NmeAIII GCCGAG 1 cut(s) 524
NmuCI GTSAC 2 cut(s) 766, 964
NspI RCATGY 1 cut(s) 383
PaeR7I CTCGAG 1 cut(s) 269
PagI TCATGA 1 cut(s) 1211
PciI ACATGT 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 319
PfeI GAWTC 2 cut(s) 440, 1052
PflMI CCANNNNNTGG 3 cut(s) 57, 622, 1034
PfoI TCCNGGA 2 cut(s) 44, 1059
PkrI GCNGC 8 cut(s) 510, 537, 540, 567, 688, 691, 948, 1009
PleI GAGTC 1 cut(s) 961
PpsI GAGTC 1 cut(s) 961
PscI ACATGT 1 cut(s) 379
Psp124BI GAGCTC 1 cut(s) 415
Psp6I CCWGG 2 cut(s) 426, 801
PspFI CCCAGC 1 cut(s) 493
PspGI CCWGG 2 cut(s) 426, 801
PspN4I GGNNCC 8 cut(s) 10, 49, 70, 71, 479, 837, 876, 1135
PspOMI GGGCCC 1 cut(s) 69
PspPI GGNCC 9 cut(s) 33, 48, 69, 70, 112, 464, 478, 496, 1013
PspXI VCTCGAGB 1 cut(s) 269
PstI CTGCAG 1 cut(s) 691
RsaI GTAC 3 cut(s) 347, 644, 1161
RsaNI GTAC 3 cut(s) 346, 643, 1160
SacI GAGCTC 1 cut(s) 415
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 8 cut(s) 509, 536, 539, 566, 687, 690, 947, 1008
Sau3AI GATC 7 cut(s) 126, 138, 189, 210, 241, 334, 1093
Sau96I GGNCC 9 cut(s) 33, 48, 69, 70, 112, 464, 478, 496, 1013
SchI GAGTC 1 cut(s) 961
ScrFI CCNGG 7 cut(s) 46, 254, 428, 489, 490, 803, 1061
SduI GDGCHC 3 cut(s) 73, 415, 1188
SfaNI GCATC 3 cut(s) 153, 318, 903
SfcI CTRYAG 1 cut(s) 687
Sfr274I CTCGAG 1 cut(s) 269
SinI GGWCC 2 cut(s) 48, 1013
SlaI CTCGAG 1 cut(s) 269
SmaI CCCGGG 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 3 cut(s) 21, 670, 1000
SsiI CCGC 8 cut(s) 31, 66, 509, 527, 541, 565, 872, 1007
SspMI CTAG 1 cut(s) 393
SstI GAGCTC 1 cut(s) 415
StyD4I CCNGG 7 cut(s) 44, 252, 426, 487, 488, 801, 1059
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 4 cut(s) 161, 622, 850, 933
TaiI ACGT 1 cut(s) 768
TaqI TCGA 3 cut(s) 129, 270, 587
TaqII GACCGA 2 cut(s) 736, 1178
TasI AATT 3 cut(s) 21, 670, 1000
TatI WGTACW 1 cut(s) 1159
TauI GCSGC 3 cut(s) 511, 568, 1010
TfiI GAWTC 2 cut(s) 440, 1052
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 2 cut(s) 627, 938
TseFI GTSAC 2 cut(s) 766, 964
TseI GCWGC 5 cut(s) 535, 538, 686, 689, 946
Tsp45I GTSAC 2 cut(s) 766, 964
TspDTI ATGAA 8 cut(s) 168, 265, 346, 470, 590, 1065, 1131, 1168
TspGWI ACGGA 2 cut(s) 423, 987
TspMI CCCGGG 1 cut(s) 488
TspRI CASTG 2 cut(s) 627, 938
Van91I CCANNNNNTGG 3 cut(s) 57, 622, 1034
VpaK11BI GGWCC 2 cut(s) 48, 1013
XapI RAATTY 1 cut(s) 21
XceI RCATGY 1 cut(s) 383
XhoI CTCGAG 1 cut(s) 269
XmaI CCCGGG 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 1197
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.