Rroxscaffold_3G00247930

Blue copper protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005440
Physical Location & Seq
Forward (+)
41267090 .. 41268526
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247930.1

Sequence Viewer

Length: 696 bp
ATGGAGGAGACGCGAAATAAGGTGCTCACCACCTCATCATGTTTTCTTATTCTTGTTTCAGTTTCCAGTAATTCTGTTCATGCCTACAAGAACCACACAGTGGGCGACTCCTTGGGTTGGTACGACAACCTCCAAAAGCCTGATCTTAATTACCAGAACTGGGCTGCAGCCAACAACTTCAGCTTGGGAGATTTTCTCATTTTCAATACTGATACGAACCACTCAGTCATCCAAACCTATAACATGACAACGTACAAGCTGTGTGATTATGACGACGCCGATGAGAAGGATATAATTCAATGGTCGGAAGCGAACCCGTCAAACACTGCCACACACGATGTGTCGGTGGCAGTTCCTTTGTTAAAAGAGGGCATCACATATTTCTTTTCCGGTGATTATGATGGCGAACAGTGCCAGAATGGGCAGCACTTCAAGATAAATGTTACTCAAGGACAAGGCTTGCCAAAGAGTTTAGACGATTCCCCGGCAGGACCAGCAAGCAGTCCACAGTCAAGCAATGGAGACGATGAATCAATCCCGGACACAATCGTCCCTAATTCCAACTTCAATGACCCCAAACAAGAAGATGACAATGATGATAAACAGCCATCTGGATCGGTTTCATTTTCAGTTCCTCATGTACAAGGCAATCTGATTTTCGTTTTGCTAGGTCTTGTCTACTTGTTGTACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

231

Amino Acids

25.48

Weight (kDa)

4.24

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 142 5.9e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 548
AccB7I CCANNNNNTGG 1 cut(s) 100
AccI GTMKAC 1 cut(s) 678
AccII CGCG 1 cut(s) 13
AclWI GGATC 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 276
AdeI CACNNNGTG 2 cut(s) 100, 340
AfaI GTAC 4 cut(s) 122, 254, 642, 689
AfiI CCNNNNNNNGG 3 cut(s) 100, 117, 160
AgsI TTSAA 4 cut(s) 205, 299, 433, 568
AluBI AGCT 2 cut(s) 183, 259
AluI AGCT 2 cut(s) 183, 259
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 2, 516
AlwI GGATC 1 cut(s) 622
ApeKI GCWGC 3 cut(s) 164, 167, 424
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 2 cut(s) 485, 539
AsuHPI GGTGA 2 cut(s) 19, 404
AvaII GGWCC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 3 cut(s) 151, 179, 436
BccI CCATC 2 cut(s) 395, 616
BcnI CCSGG 2 cut(s) 485, 539
BcoDI GTCTC 2 cut(s) 2, 516
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 3 cut(s) 165, 168, 425
BlsI GCNGC 3 cut(s) 166, 169, 426
Bme1390I CCNGG 2 cut(s) 485, 539
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 491
BmrFI CCNGG 2 cut(s) 485, 539
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 381
BmuI ACTGGG 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpuEI CTTGAG 1 cut(s) 432
BpuMI CCSGG 2 cut(s) 485, 539
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 111, 483
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 117, 160
Bse1I ACTGG 2 cut(s) 66, 164
Bse3DI GCAATG 1 cut(s) 523
BseDI CCNNGG 2 cut(s) 111, 483
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 3 cut(s) 100, 117, 160
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 2 cut(s) 66, 164
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 151, 179, 436
Bsh1236I CGCG 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 3 cut(s) 390, 485, 539
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 3 cut(s) 100, 117, 160
BsmAI GTCTC 2 cut(s) 2, 516
BsmBI CGTCTC 2 cut(s) 2, 516
BsmFI GGGAC 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 2 cut(s) 142, 614
BspCNI CTCAG 1 cut(s) 236
BspFNI CGCG 1 cut(s) 13
BspHI TCATGA 1 cut(s) 692
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 2 cut(s) 66, 164
BssECI CCNNGG 2 cut(s) 111, 483
BssMI GATC 2 cut(s) 142, 614
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 111
Bst4CI ACNGT 3 cut(s) 100, 411, 510
BstACI GRCGYC 1 cut(s) 276
BstAUI TGTACA 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 461, 499
BstDEI CTNAG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 228
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 2 cut(s) 145, 617
BstMAI GTCTC 2 cut(s) 2, 516
BstMBI GATC 2 cut(s) 142, 614
BstMWI GCNNNNNNNGC 2 cut(s) 411, 494
BstSCI CCNGG 2 cut(s) 483, 537
BstSFI CTRYAG 1 cut(s) 165
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 151, 179, 436
BtsCI GGATG 1 cut(s) 228
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 3 cut(s) 105, 324, 416
Cac8I GCNNGC 2 cut(s) 461, 499
CciI TCATGA 1 cut(s) 692
Cfr13I GGNCC 1 cut(s) 491
CseI GACGC 2 cut(s) 19, 284
Csp6I GTAC 4 cut(s) 121, 253, 641, 688
CviAII CATG 5 cut(s) 39, 80, 244, 638, 693
CviJI RGCY 7 cut(s) 139, 164, 170, 183, 259, 459, 607
CviKI_1 RGCY 7 cut(s) 139, 164, 170, 183, 259, 459, 607
CviQI GTAC 4 cut(s) 121, 253, 641, 688
DdeI CTNAG 1 cut(s) 223
DpnI GATC 2 cut(s) 144, 616
DpnII GATC 2 cut(s) 142, 614
DraIII CACNNNGTG 2 cut(s) 100, 340
DrdI GACNNNNNNGTC 1 cut(s) 548
DseDI GACNNNNNNGTC 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 2 cut(s) 2, 516
FaeI CATG 5 cut(s) 42, 83, 247, 641, 696
FaqI GGGAC 1 cut(s) 536
FatI CATG 5 cut(s) 38, 79, 243, 637, 692
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 3 cut(s) 165, 168, 425
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 3 cut(s) 165, 168, 425
FspBI CTAG 1 cut(s) 668
GluI GCNGC 3 cut(s) 165, 168, 425
HapII CCGG 3 cut(s) 390, 485, 539
HgaI GACGC 2 cut(s) 19, 284
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 5 cut(s) 42, 83, 247, 641, 696
HinfI GANTC 3 cut(s) 107, 479, 530
HpaII CCGG 3 cut(s) 390, 485, 539
HphI GGTGA 2 cut(s) 19, 404
Hpy166II GTNNAC 2 cut(s) 506, 679
Hpy188I TCNGA 2 cut(s) 307, 654
Hpy188III TCNNGA 3 cut(s) 433, 612, 693
Hpy8I GTNNAC 2 cut(s) 506, 679
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 3 cut(s) 100, 411, 510
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 411, 494
HpyF3I CTNAG 1 cut(s) 223
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 5 cut(s) 42, 83, 247, 641, 696
Kzo9I GATC 2 cut(s) 142, 614
Lsp1109I GCAGC 3 cut(s) 151, 179, 436
LweI GCATC 1 cut(s) 381
MaeI CTAG 1 cut(s) 668
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 442
MalI GATC 2 cut(s) 144, 616
MboI GATC 2 cut(s) 142, 614
MboII GAAGA 1 cut(s) 596
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 4 cut(s) 70, 148, 294, 556
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 285, 585
MnlI CCTC 4 cut(s) 43, 140, 361, 645
MseI TTAA 2 cut(s) 147, 362
MspI CCGG 3 cut(s) 390, 485, 539
MspR9I CCNGG 2 cut(s) 485, 539
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 411, 494
NciI CCSGG 2 cut(s) 485, 539
NdeII GATC 2 cut(s) 142, 614
NlaIII CATG 5 cut(s) 42, 83, 247, 641, 696
PagI TCATGA 1 cut(s) 692
PfeI GAWTC 2 cut(s) 479, 530
PflMI CCANNNNNTGG 1 cut(s) 100
PfoI TCCNGGA 1 cut(s) 537
PkrI GCNGC 3 cut(s) 166, 169, 426
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 491
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 4 cut(s) 122, 254, 642, 689
RsaNI GTAC 4 cut(s) 121, 253, 641, 688
SaqAI TTAA 2 cut(s) 147, 362
SatI GCNGC 3 cut(s) 165, 168, 425
Sau3AI GATC 2 cut(s) 142, 614
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 485, 539
SduI GDGCHC 1 cut(s) 27
SetI ASST 8 cut(s) 24, 35, 132, 185, 239, 254, 261, 673
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
Sse9I AATT 4 cut(s) 70, 148, 294, 556
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 2 cut(s) 483, 537
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 3 cut(s) 100, 411, 510
TaiI ACGT 1 cut(s) 254
TasI AATT 4 cut(s) 70, 148, 294, 556
TatI WGTACW 2 cut(s) 640, 687
TfiI GAWTC 2 cut(s) 479, 530
Tru1I TTAA 2 cut(s) 147, 362
Tru9I TTAA 2 cut(s) 147, 362
TscAI CASTG 3 cut(s) 105, 331, 416
TseI GCWGC 3 cut(s) 164, 167, 424
TspDTI ATGAA 3 cut(s) 68, 543, 612
TspRI CASTG 3 cut(s) 105, 331, 416
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 678
XspI CTAG 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.