Rw5G027880

Blue copper protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0005440
Physical Location & Seq
Reverse (-)
41584840 .. 41586969
2130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G027880.1

Sequence Viewer

Length: 678 bp
ATGGCGCTCATCATCAGCTCATCATGTTTTCTCATTCTTGTTTCAGTTTCGAGTATTTATGTTCATGCCTACAAGAACCACACGGTGGGCGACTCCTTGGGTTGGTACGACAAACTCCAAAAGCCCGATCTTAATTACCAGAAATGGGCTGCAGCCAACAACTTCAGTTTGGGAGATTTTCTCATTTTCAATACTGATACGAACCACTCGGTCATCCAAACCTATAACGTCACTACATACAAGCTGTGTGATTACAACAATGCCCTGGACAATGATACAATCCAATGGTCGGAAGCGGAGCCGTCAAACACCGTCCCACATGATGTTTCGGTGGCGGTTCCTTTGTTGAAAGAGGGCATCACATATTTCTTTTCCGGTGATTATGATGGCGAACAGTGCAAGAATGGGCAGCACTTCAAGATAAATGTGACTCACGGACAAGGCTTGCCAAAGACTTTAGACAATTCGGCGGCAGGACCAGCAAGCAGTCCACAATCTGGCAATGGTGATGATGAATCAATCCCGGACACAATCGTCCCTAATGCCAACTTCAATGATCCCAAACCAGATGACAATGATGATATAAAGCCATCTGGAGCCGTTTCATTTTCAGTTCCTCATGTACAAGGCAATCTGATTTTCATTTTGCTCGGTCTTGTCTACTTGTTATGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

225

Amino Acids

24.66

Weight (kDa)

4.54

Isoelectric Point (pI)

21.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 44 - 137 5.6e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 533
AccB7I CCANNNNNTGG 2 cut(s) 85, 497
AccI GTMKAC 1 cut(s) 660
AciI CCGC 3 cut(s) 296, 335, 470
AclWI GGATC 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 148
AdeI CACNNNGTG 1 cut(s) 85
AfaI GTAC 2 cut(s) 107, 624
AfiI CCNNNNNNNGG 5 cut(s) 85, 102, 145, 289, 497
AgsI TTSAA 4 cut(s) 190, 349, 418, 553
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 2 cut(s) 18, 244
AluI AGCT 2 cut(s) 18, 244
AlwI GGATC 1 cut(s) 551
ApeKI GCWGC 3 cut(s) 149, 152, 409
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 476
AsuC2I CCSGG 1 cut(s) 524
AsuHPI GGTGA 2 cut(s) 389, 518
AvaII GGWCC 1 cut(s) 476
BbvI GCAGC 3 cut(s) 136, 164, 421
BccI CCATC 2 cut(s) 380, 598
BceAI ACGGC 2 cut(s) 286, 584
BciT130I CCWGG 1 cut(s) 266
BcnI CCSGG 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 4 cut(s) 150, 153, 410, 471
BlsI GCNGC 4 cut(s) 151, 154, 411, 472
Bme1390I CCNGG 2 cut(s) 266, 524
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 3 cut(s) 300, 339, 598
BmrFI CCNGG 2 cut(s) 266, 524
BmsI GCATC 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 165, 197
BpmI CTGGAG 1 cut(s) 615
BpuMI CCSGG 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 96, 264
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 102, 145, 289, 497
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 96, 264
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 5 cut(s) 85, 102, 145, 289, 497
BseMI GCAATG 1 cut(s) 508
BseXI GCAGC 3 cut(s) 136, 164, 421
BsiSI CCGG 2 cut(s) 375, 524
BslFI GGGAC 2 cut(s) 299, 521
BslI CCNNNNNNNGG 5 cut(s) 85, 102, 145, 289, 497
BsmFI GGGAC 2 cut(s) 299, 521
Bsp1407I TGTACA 1 cut(s) 622
Bsp143I GATC 2 cut(s) 127, 556
BspACI CCGC 3 cut(s) 296, 335, 470
BspHI TCATGA 1 cut(s) 674
BspLI GGNNCC 3 cut(s) 300, 339, 598
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 508
BsrGI TGTACA 1 cut(s) 622
BssECI CCNNGG 2 cut(s) 96, 264
BssMI GATC 2 cut(s) 127, 556
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 3 cut(s) 85, 313, 396
BstAUI TGTACA 1 cut(s) 622
BstC8I GCNNGC 2 cut(s) 446, 484
BstF5I GGATG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 130, 559
BstMBI GATC 2 cut(s) 127, 556
BstMWI GCNNNNNNNGC 2 cut(s) 396, 479
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 264, 522
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 3 cut(s) 136, 164, 421
BtsCI GGATG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 446, 484
CciI TCATGA 1 cut(s) 674
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 476
Csp6I GTAC 2 cut(s) 106, 623
CviAII CATG 5 cut(s) 24, 65, 320, 620, 675
CviJI RGCY 9 cut(s) 18, 124, 149, 155, 244, 301, 444, 589, 599
CviKI_1 RGCY 9 cut(s) 18, 124, 149, 155, 244, 301, 444, 589, 599
CviQI GTAC 2 cut(s) 106, 623
DpnI GATC 2 cut(s) 129, 558
DpnII GATC 2 cut(s) 127, 556
DraIII CACNNNGTG 1 cut(s) 85
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 5 cut(s) 27, 68, 323, 623, 678
FaqI GGGAC 2 cut(s) 299, 521
FatI CATG 5 cut(s) 23, 64, 319, 619, 674
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 4 cut(s) 150, 153, 410, 471
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 4 cut(s) 150, 153, 410, 471
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 150, 153, 410, 471
GsuI CTGGAG 1 cut(s) 615
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 2 cut(s) 375, 524
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 27, 68, 323, 623, 678
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 92, 430, 515
HpaII CCGG 2 cut(s) 375, 524
HphI GGTGA 2 cut(s) 389, 518
Hpy166II GTNNAC 2 cut(s) 491, 661
Hpy188I TCNGA 2 cut(s) 292, 636
Hpy188III TCNNGA 3 cut(s) 418, 594, 675
Hpy8I GTNNAC 2 cut(s) 491, 661
HpyCH4III ACNGT 3 cut(s) 85, 313, 396
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 152, 399
HpyF10VI GCNNNNNNNGC 2 cut(s) 396, 479
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 5 cut(s) 27, 68, 323, 623, 678
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 2 cut(s) 127, 556
LmnI GCTCC 2 cut(s) 298, 596
Lsp1109I GCAGC 3 cut(s) 136, 164, 421
LweI GCATC 1 cut(s) 366
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 229, 427
MalI GATC 2 cut(s) 129, 558
MboI GATC 2 cut(s) 127, 556
MluCI AATT 2 cut(s) 133, 463
MlyI GAGTC 2 cut(s) 86, 424
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 2 cut(s) 346, 627
MseI TTAA 1 cut(s) 132
MspI CCGG 2 cut(s) 375, 524
MspR9I CCNGG 2 cut(s) 266, 524
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 396, 479
NciI CCSGG 1 cut(s) 524
NdeII GATC 2 cut(s) 127, 556
NlaIII CATG 5 cut(s) 27, 68, 323, 623, 678
NlaIV GGNNCC 3 cut(s) 300, 339, 598
NmuCI GTSAC 2 cut(s) 229, 427
PagI TCATGA 1 cut(s) 674
PfeI GAWTC 1 cut(s) 515
PflMI CCANNNNNTGG 2 cut(s) 85, 497
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 4 cut(s) 151, 154, 411, 472
PleI GAGTC 2 cut(s) 86, 424
PpsI GAGTC 2 cut(s) 86, 424
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 3 cut(s) 300, 339, 598
PspPI GGNCC 1 cut(s) 476
PstI CTGCAG 1 cut(s) 154
RsaI GTAC 2 cut(s) 107, 624
RsaNI GTAC 2 cut(s) 106, 623
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 4 cut(s) 150, 153, 410, 471
Sau3AI GATC 2 cut(s) 127, 556
Sau96I GGNCC 1 cut(s) 476
SchI GAGTC 2 cut(s) 86, 424
ScrFI CCNGG 2 cut(s) 266, 524
SetI ASST 4 cut(s) 20, 224, 231, 246
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 476
Sse9I AATT 2 cut(s) 133, 463
SsiI CCGC 3 cut(s) 296, 335, 470
StyD4I CCNGG 2 cut(s) 264, 522
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 3 cut(s) 85, 313, 396
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 2 cut(s) 199, 641
TasI AATT 2 cut(s) 133, 463
TatI WGTACW 1 cut(s) 622
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 1 cut(s) 515
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 401
TseFI GTSAC 2 cut(s) 229, 427
TseI GCWGC 3 cut(s) 149, 152, 409
Tsp45I GTSAC 2 cut(s) 229, 427
TspDTI ATGAA 4 cut(s) 53, 528, 594, 631
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 1 cut(s) 401
Van91I CCANNNNNTGG 2 cut(s) 85, 497
VpaK11BI GGWCC 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.