Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005440

Physical Location & Seq

Genomic Coordinates Reverse (-)

21709137 .. 21711694

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G270100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAATTACAGAGAAAGTACTGCAGCAATCTTTTCTTTTTTCTTCTTCTTCTTCATTCATTCTTCTTCTCAGGATCTGTTGATGCTTACAAGAACTACACAGTAGGAGACTCTTTGGGTTGGTATGATAACCTCCAAAACCCCAAACTTAATTACCAGAAATGGGTTGCTGCCAAGAACTTCAGCTTGGGAGATTTTCTCATTTTCAACACTGACACGAACCACTCGGTTGTGCAAACATTTAACTTGACGACATACAAGCTGTGCGATTACGACGATGCTCAAGAAAACGACACGATCCAATGGTCGTCGGCAGACCCATCAAACACGGCCTCACATCCAGTCTCTGTGGAAGTGCCTTTGCTGAAAGAGGGCATGTCGTATTTCTTTTCAGGCGATTACGACGGCGAGCAATGCAAGAATGGCCAGCACTTTAAGATCAACGTCTCTCATGGCCAAGGCCTGCCCAAGAGCTTACAGGAACCGGCCGCACAGAATCAGTCCCCAGGTCCAGCAAGCGGACCCCAGTCTGGCAACGACGAGGGTTCGGTCCCGGATACAATCGTTCCTTCCAATTTCGATCACCCCCACGAGGACGACACAGAGGAGAAAAACCCATCTGGGTCGGTTGCTTTATCAATTTATGGGACGCAAGGAATGGCAGTTCCGTTTTTTATTTTATTAATGCGTTTTTATATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

235

Amino Acids

26.18

Weight (kDa)

4.65

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08500
fragaria_vesca	FvH4_5g22740
malus_domestica	MD03G1156900.v1.1 MD11G1183800.v1.1
prunus_persica	Prupe.4G270100_v2.0.a1
pyrus_communis	pycom12561g00210 pycom5153684g00100
rosa_chinensis	RchiOBHm_Chr5g0044801 RchiOBHm_Chr7g0211321
rosa_laevigata	RLG00000003010 RLG00000034298
rosa_multiflora	Rmu_sc0004567.1_g000014 Rmu_sc0010445.1_g000001 Rmu_sc0020779.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030860 Rroxscaffold_1G00036240 Rroxscaffold_3G00247930
rosa_rugosa	Rorug05G0218200 Rorug07G0125000
rosa_samantha	Rh5BG307800 Rh5CG334900 Rh5DG317900 Rh7AG257400 Rh7BG251500 Rh7CG274200 Rh7DG264400
rosa_wichuraiana	Rw5G027880 Rw5G027890 Rw7G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	489, 519
AclWI	GGATC	2 cut(s)	82, 292
AcoI	YGGCCR	3 cut(s)	424, 454, 486
AcuI	CTGAAG	1 cut(s)	166
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	4 cut(s)	163, 518, 530, 592
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AloI	GAACNNNNNNTCC	2 cut(s)	648, 680
AluBI	AGCT	3 cut(s)	186, 262, 474
AluI	AGCT	3 cut(s)	186, 262, 474
Alw26I	GTCTC	3 cut(s)	102, 349, 451
AlwI	GGATC	2 cut(s)	82, 292
AlwNI	CAGNNNCTG	2 cut(s)	77, 347
AoxI	GGCC	5 cut(s)	330, 424, 454, 460, 486
ApeKI	GCWGC	2 cut(s)	24, 170
AseI	ATTAAT	1 cut(s)	683
AspS9I	GGNCC	3 cut(s)	509, 521, 550
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	1 cut(s)	575
AvaII	GGWCC	3 cut(s)	509, 521, 550
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BalI	TGGCCA	2 cut(s)	426, 456
BauI	CACGAG	1 cut(s)	590
BbvI	GCAGC	2 cut(s)	36, 157
BccI	CCATC	2 cut(s)	328, 625
BceAI	ACGGC	2 cut(s)	345, 421
BciT130I	CCWGG	1 cut(s)	507
BciVI	GTATCC	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	3 cut(s)	102, 349, 451
BfmI	CTRYAG	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	550
BisI	GCNGC	3 cut(s)	25, 171, 489
BlsI	GCNGC	3 cut(s)	26, 172, 490
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	507, 554
Bme18I	GGWCC	3 cut(s)	509, 521, 550
BmgT120I	GGNCC	3 cut(s)	509, 521, 550
BmiI	GGNNCC	3 cut(s)	483, 523, 552
BmrFI	CCNGG	2 cut(s)	507, 554
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	2 cut(s)	73, 268
BmuI	ACTGGG	1 cut(s)	520
BoxI	GACNNNNGTC	1 cut(s)	526
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BpuEI	CTTGAG	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	457, 505
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 518, 530, 592
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	341, 526
Bse3DI	GCAATG	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	457, 505
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	4 cut(s)	163, 518, 530, 592
BseMI	GCAATG	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	341, 526
BseRI	GAGGAG	1 cut(s)	620
BseX3I	CGGCCG	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	36, 157
Bsh1285I	CGRYCG	1 cut(s)	489
BshFI	GGCC	5 cut(s)	332, 426, 456, 462, 488
BsiEI	CGRYCG	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	485, 554
BslFI	GGGAC	3 cut(s)	487, 536, 661
BslI	CCNNNNNNNGG	4 cut(s)	163, 518, 530, 592
BsmAI	GTCTC	3 cut(s)	102, 349, 451
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	3 cut(s)	487, 536, 661
BsnI	GGCC	5 cut(s)	332, 426, 456, 462, 488
Bsp143I	GATC	4 cut(s)	74, 297, 438, 580
BspACI	CCGC	2 cut(s)	489, 519
BspANI	GGCC	5 cut(s)	332, 426, 456, 462, 488
BspCNI	CTCAG	1 cut(s)	83
BspLI	GGNNCC	3 cut(s)	483, 523, 552
BspMAI	CTGCAG	1 cut(s)	26
BspPI	GGATC	2 cut(s)	82, 292
BsrDI	GCAATG	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	2 cut(s)	341, 526
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	457, 505
BssMI	GATC	4 cut(s)	74, 297, 438, 580
BssSI	CACGAG	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	457
Bst2BI	CACGAG	1 cut(s)	590
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	103
BstC8I	GCNNGC	4 cut(s)	410, 428, 464, 517
BstDEI	CTNAG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	4 cut(s)	77, 300, 441, 583
BstMAI	GTCTC	3 cut(s)	102, 349, 451
BstMBI	GATC	4 cut(s)	74, 297, 438, 580
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	2 cut(s)	414, 423
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	379
BstPAI	GACNNNNGTC	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	505, 552
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	36, 157
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BstZI	CGGCCG	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	550
BsuRI	GGCC	5 cut(s)	332, 426, 456, 462, 488
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	4 cut(s)	410, 428, 464, 517
CaiI	CAGNNNCTG	2 cut(s)	77, 347
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	3 cut(s)	509, 521, 550
CseI	GACGC	1 cut(s)	658
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	2 cut(s)	376, 452
CviJI	RGCY	8 cut(s)	186, 262, 332, 426, 456, 462, 474, 488
CviKI_1	RGCY	8 cut(s)	186, 262, 332, 426, 456, 462, 474, 488
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	4 cut(s)	76, 299, 440, 582
DpnII	GATC	4 cut(s)	74, 297, 438, 580
EaeI	YGGCCR	3 cut(s)	424, 454, 486
EagI	CGGCCG	1 cut(s)	486
EclXI	CGGCCG	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	457
Eco147I	AGGCCT	1 cut(s)	462
Eco47I	GGWCC	3 cut(s)	509, 521, 550
Eco52I	CGGCCG	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	457
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	2 cut(s)	379, 455
FaiI	YATR	7 cut(s)	126, 256, 377, 453, 645, 696, 698
FaqI	GGGAC	3 cut(s)	487, 536, 661
FatI	CATG	2 cut(s)	375, 451
Fnu4HI	GCNGC	3 cut(s)	25, 171, 489
FokI	GGATG	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	25, 171, 489
GluI	GCNGC	3 cut(s)	25, 171, 489
HaeIII	GGCC	5 cut(s)	332, 426, 456, 462, 488
HapII	CCGG	2 cut(s)	485, 554
HgaI	GACGC	1 cut(s)	658
Hin1II	CATG	2 cut(s)	379, 455
HinfI	GANTC	2 cut(s)	110, 496
HpaII	CCGG	2 cut(s)	485, 554
HphI	GGTGA	1 cut(s)	575
Hpy188III	TCNNGA	2 cut(s)	72, 284
Hpy99I	CGWCG	4 cut(s)	278, 313, 407, 542
HpyAV	CCTTC	1 cut(s)	579
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	3 cut(s)	24, 235, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	414, 423
HpyF3I	CTNAG	1 cut(s)	70
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	2 cut(s)	379, 455
Kzo9I	GATC	4 cut(s)	74, 297, 438, 580
Lsp1109I	GCAGC	2 cut(s)	36, 157
LweI	GCATC	2 cut(s)	73, 268
MaeII	ACGT	1 cut(s)	444
MalI	GATC	4 cut(s)	76, 299, 440, 582
MboI	GATC	4 cut(s)	74, 297, 438, 580
MboII	GAAGA	6 cut(s)	35, 38, 41, 44, 55, 58
MflI	RGATCY	1 cut(s)	74
MlsI	TGGCCA	2 cut(s)	426, 456
MluCI	AATT	4 cut(s)	5, 151, 574, 639
MluNI	TGGCCA	2 cut(s)	426, 456
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	6 cut(s)	143, 343, 364, 535, 586, 598
Mox20I	TGGCCA	2 cut(s)	426, 456
MscI	TGGCCA	2 cut(s)	426, 456
MseI	TTAA	4 cut(s)	150, 243, 435, 683
Msp20I	TGGCCA	2 cut(s)	426, 456
MspI	CCGG	2 cut(s)	485, 554
MspR9I	CCNGG	2 cut(s)	507, 554
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	414, 423
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	4 cut(s)	74, 297, 438, 580
NlaIII	CATG	2 cut(s)	379, 455
NlaIV	GGNNCC	3 cut(s)	483, 523, 552
NspI	RCATGY	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	496
PfoI	TCCNGGA	1 cut(s)	552
PkrI	GCNGC	3 cut(s)	26, 172, 490
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PshAI	GACNNNNGTC	1 cut(s)	526
PshBI	ATTAAT	1 cut(s)	683
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	483, 523, 552
PspPI	GGNCC	3 cut(s)	509, 521, 550
PstI	CTGCAG	1 cut(s)	26
PstNI	CAGNNNCTG	2 cut(s)	77, 347
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SaqAI	TTAA	4 cut(s)	150, 243, 435, 683
SatI	GCNGC	3 cut(s)	25, 171, 489
Sau3AI	GATC	4 cut(s)	74, 297, 438, 580
Sau96I	GGNCC	3 cut(s)	509, 521, 550
ScaI	AGTACT	1 cut(s)	20
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	507, 554
SetI	ASST	6 cut(s)	135, 188, 264, 447, 476, 511
SfaNI	GCATC	2 cut(s)	73, 268
SfcI	CTRYAG	1 cut(s)	22
SinI	GGWCC	3 cut(s)	509, 521, 550
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	4 cut(s)	5, 151, 574, 639
SseBI	AGGCCT	1 cut(s)	462
SsiI	CCGC	2 cut(s)	489, 519
StuI	AGGCCT	1 cut(s)	462
StyD4I	CCNGG	2 cut(s)	505, 552
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	579
TaqII	GACCGA	1 cut(s)	538
TasI	AATT	4 cut(s)	5, 151, 574, 639
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	4 cut(s)	150, 243, 435, 683
Tru9I	TTAA	4 cut(s)	150, 243, 435, 683
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	2 cut(s)	24, 170
TspDTI	ATGAA	2 cut(s)	44, 48
TspGWI	ACGGA	1 cut(s)	657
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	3 cut(s)	509, 521, 550
VspI	ATTAAT	1 cut(s)	683
XceI	RCATGY	1 cut(s)	379
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.