Rroxscaffold_1G00036240

Blue copper protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005440
Physical Location & Seq
Forward (+)
52894706 .. 52896422
1717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036240.1

Sequence Viewer

Length: 681 bp
ATGGCGCTCATCATCAGCTCATCATCATGTTTTCTTATTCTTGTTTCAGTTTCGAGTATTTATGTTCATGCCTACAAGAACCACACAGTGGGCGACTCCTTGGGTTGGTACGATAACCTCCAAAAGCCCGATCTTAATTACCAGAAATGGGCTGCAGCCAACAACTTCAGTTTGGGAGATTTTCTCATTTTCAATACTGATACGAACCACTCGGTCATCCAAACCTATAACGTCACTACGTACAAGCTGTGCGATTACGACAATGCCGTGGAGAATGATACAATCCAATGGTCGGAAGCGGAGCCGTCAAACACCGTCCCACATGATGTTTCGGTGGCGGTTCCTTTGTTGAAAGAGGGCATCACATATTTCTTTTCCGGTGATTATGATGGCGAACAGTGCAAGAATGGGCAGCACTTCAAGATAAATGTGACTCACGGACAAGGCTTGCCAAAGACTATAGACAATTCGGCGGCAGGACCAGCAAGCAGTCCACAATCAGGCAATGGTGATGATGAAGCAATCCCGGACACAATCGTCCCTAATTCCAACTTCAATGATCCCAAACCAGATGACAATGATGATACACAGCCGTCTGGAGCCGTTTCATTTTCAGTTCCTCATGTACAAGGCAATCTGATTTTCATTTTGCTCGGTCTTGTCTACTTGTTATGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

226

Amino Acids

24.73

Weight (kDa)

4.35

Isoelectric Point (pI)

23.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 41 - 138 2.7e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 536
AccB7I CCANNNNNTGG 1 cut(s) 88
AccI GTMKAC 1 cut(s) 663
AciI CCGC 3 cut(s) 299, 338, 473
AclWI GGATC 1 cut(s) 554
AcuI CTGAAG 1 cut(s) 151
AdeI CACNNNGTG 1 cut(s) 88
AfaI GTAC 3 cut(s) 110, 242, 627
AfiI CCNNNNNNNGG 5 cut(s) 88, 105, 148, 292, 500
AgsI TTSAA 4 cut(s) 193, 352, 421, 556
AluBI AGCT 2 cut(s) 18, 247
AluI AGCT 2 cut(s) 18, 247
AlwI GGATC 1 cut(s) 554
ApeKI GCWGC 3 cut(s) 152, 155, 412
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 479
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 2 cut(s) 392, 521
AvaII GGWCC 1 cut(s) 479
BbvI GCAGC 3 cut(s) 139, 167, 424
BccI CCATC 1 cut(s) 383
BceAI ACGGC 4 cut(s) 251, 289, 577, 587
BcnI CCSGG 1 cut(s) 527
BfmI CTRYAG 2 cut(s) 153, 459
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 4 cut(s) 153, 156, 413, 474
BlsI GCNGC 4 cut(s) 154, 157, 414, 475
Bme1390I CCNGG 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 3 cut(s) 303, 342, 601
BmrFI CCNGG 1 cut(s) 527
BmsI GCATC 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpmI CTGGAG 1 cut(s) 618
BpuMI CCSGG 1 cut(s) 527
BsaAI YACGTR 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 99, 267
BsaWI WCCGGW 1 cut(s) 377
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 105, 148, 292, 500
Bse3DI GCAATG 1 cut(s) 511
BseDI CCNNGG 2 cut(s) 99, 267
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 5 cut(s) 88, 105, 148, 292, 500
BseMI GCAATG 1 cut(s) 511
BseXI GCAGC 3 cut(s) 139, 167, 424
BsiSI CCGG 2 cut(s) 378, 527
BslFI GGGAC 2 cut(s) 302, 524
BslI CCNNNNNNNGG 5 cut(s) 88, 105, 148, 292, 500
BsmFI GGGAC 2 cut(s) 302, 524
Bsp1407I TGTACA 1 cut(s) 625
Bsp143I GATC 2 cut(s) 130, 559
BspACI CCGC 3 cut(s) 299, 338, 473
BspHI TCATGA 1 cut(s) 677
BspLI GGNNCC 3 cut(s) 303, 342, 601
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 511
BsrGI TGTACA 1 cut(s) 625
BssECI CCNNGG 2 cut(s) 99, 267
BssMI GATC 2 cut(s) 130, 559
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 3 cut(s) 88, 316, 399
BstAUI TGTACA 1 cut(s) 625
BstBAI YACGTR 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 449, 487
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 133, 562
BstMBI GATC 2 cut(s) 130, 559
BstMWI GCNNNNNNNGC 2 cut(s) 399, 482
BstSCI CCNGG 1 cut(s) 525
BstSFI CTRYAG 2 cut(s) 153, 459
BstSNI TACGTA 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 139, 167, 424
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 93, 404
Cac8I GCNNGC 2 cut(s) 449, 487
CciI TCATGA 1 cut(s) 677
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 479
Csp6I GTAC 3 cut(s) 109, 241, 626
CviAII CATG 5 cut(s) 27, 68, 323, 623, 678
CviJI RGCY 9 cut(s) 18, 127, 152, 158, 247, 304, 447, 592, 602
CviKI_1 RGCY 9 cut(s) 18, 127, 152, 158, 247, 304, 447, 592, 602
CviQI GTAC 3 cut(s) 109, 241, 626
DpnI GATC 2 cut(s) 132, 561
DpnII GATC 2 cut(s) 130, 559
DraIII CACNNNGTG 1 cut(s) 88
DrdI GACNNNNNNGTC 1 cut(s) 536
DseDI GACNNNNNNGTC 1 cut(s) 536
Eco105I TACGTA 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 5 cut(s) 30, 71, 326, 626, 681
FaqI GGGAC 2 cut(s) 302, 524
FatI CATG 5 cut(s) 26, 67, 322, 622, 677
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 4 cut(s) 153, 156, 413, 474
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 4 cut(s) 153, 156, 413, 474
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 153, 156, 413, 474
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 2 cut(s) 378, 527
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 30, 71, 326, 626, 681
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 95, 433
HpaII CCGG 2 cut(s) 378, 527
HphI GGTGA 2 cut(s) 392, 521
Hpy166II GTNNAC 2 cut(s) 494, 664
Hpy188I TCNGA 2 cut(s) 295, 639
Hpy188III TCNNGA 3 cut(s) 421, 597, 678
Hpy8I GTNNAC 2 cut(s) 494, 664
HpyCH4III ACNGT 3 cut(s) 88, 316, 399
HpyCH4IV ACGT 2 cut(s) 231, 239
HpyCH4V TGCA 2 cut(s) 155, 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 399, 482
HpySE526I ACGT 2 cut(s) 231, 239
Hsp92II CATG 5 cut(s) 30, 71, 326, 626, 681
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 2 cut(s) 130, 559
LmnI GCTCC 2 cut(s) 301, 599
LpnPI CCDG 8 cut(s) 155, 391, 462, 486, 495, 540, 582, 582
Lsp1109I GCAGC 3 cut(s) 139, 167, 424
LweI GCATC 1 cut(s) 369
MaeII ACGT 2 cut(s) 231, 239
MaeIII GTNAC 2 cut(s) 232, 430
MalI GATC 2 cut(s) 132, 561
MboI GATC 2 cut(s) 130, 559
MluCI AATT 3 cut(s) 136, 466, 544
MlyI GAGTC 2 cut(s) 89, 427
MmeI TCCRAC 2 cut(s) 273, 573
MnlI CCTC 3 cut(s) 128, 349, 630
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 25
MspI CCGG 2 cut(s) 378, 527
MspR9I CCNGG 1 cut(s) 527
MwoI GCNNNNNNNGC 2 cut(s) 399, 482
NciI CCSGG 1 cut(s) 527
NdeII GATC 2 cut(s) 130, 559
NlaIII CATG 5 cut(s) 30, 71, 326, 626, 681
NlaIV GGNNCC 3 cut(s) 303, 342, 601
NmuCI GTSAC 2 cut(s) 232, 430
PagI TCATGA 1 cut(s) 677
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PflMI CCANNNNNTGG 1 cut(s) 88
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 4 cut(s) 154, 157, 414, 475
PleI GAGTC 2 cut(s) 89, 427
PpsI GAGTC 2 cut(s) 89, 427
Ppu21I YACGTR 1 cut(s) 240
PspN4I GGNNCC 3 cut(s) 303, 342, 601
PspPI GGNCC 1 cut(s) 479
PstI CTGCAG 1 cut(s) 157
RsaI GTAC 3 cut(s) 110, 242, 627
RsaNI GTAC 3 cut(s) 109, 241, 626
RseI CAYNNNNRTG 1 cut(s) 25
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 4 cut(s) 153, 156, 413, 474
Sau3AI GATC 2 cut(s) 130, 559
Sau96I GGNCC 1 cut(s) 479
SchI GAGTC 2 cut(s) 89, 427
ScrFI CCNGG 1 cut(s) 527
SetI ASST 6 cut(s) 20, 120, 227, 234, 242, 249
SfaNI GCATC 1 cut(s) 369
SfcI CTRYAG 2 cut(s) 153, 459
SinI GGWCC 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 25
SnaBI TACGTA 1 cut(s) 240
Sse9I AATT 3 cut(s) 136, 466, 544
SsiI CCGC 3 cut(s) 299, 338, 473
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 88, 316, 399
TaiI ACGT 2 cut(s) 234, 242
TaqI TCGA 1 cut(s) 53
TaqII GACCGA 2 cut(s) 202, 644
TasI AATT 3 cut(s) 136, 466, 544
TatI WGTACW 1 cut(s) 625
TauI GCSGC 1 cut(s) 476
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 93, 404
TseFI GTSAC 2 cut(s) 232, 430
TseI GCWGC 3 cut(s) 152, 155, 412
Tsp45I GTSAC 2 cut(s) 232, 430
TspDTI ATGAA 4 cut(s) 56, 531, 597, 634
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 2 cut(s) 93, 404
Van91I CCANNNNNTGG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.