Rh5CG334900

Blue copper protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005440
Physical Location & Seq
Reverse (-)
37932234 .. 37934209
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG334900.1

Sequence Viewer

Length: 780 bp
ATGATAAGAAGTTCAAGTACTAAATGGATCTGCTCCCCCGCGGCAACAGCGGCGTGTGTACTAAAATCACATCTCACACACTCCGAGGACGATAGAAGAAGAATGGCGCCCGTCATTAGCTCATCGTGTTTTCTTATTCTTGTTTCAGTTTCGAGTATTTATGTTCATGCCTACAAGAACCACACAGTGGGCGACTCCTTGGGTTGGTACGATAACCTCCAAAAGCCCGACCTCAATTACCAGAAATGGGCTACAGCCAACAACTTCAGTTTGGGAGATTTTCTCATTTTCAATACTGATACGAACCACTCGGTCATCCAAACCTATAACGTCACTACATACAAGCTGTGTGATTACAACAATGCCGTGGAGAATGATACAATCCAATGGTCGGACGCGGAGCCGTCAAACACCGTCCCACATGATGTTTCGGTGGCGGTTCCTTTGTTGAAAGAGGGCATCACATATTTCTTTTCCGGTGATTATGATGGCGAACAGTGCAAGAATGGGCAGCACTTCAAGATAAATGTTACTCATGGCCAAGGCTTGCCAAAGACTATAGACAATTCGGCGGCAGGACCAGCAAGCAGTCCACAATCAGGCAATGGTGATGATGAATCAATCCCGGACACAATCGTCCCTAATGCCAACTTCAATGATCCCAAACCAGATGACAATGATGATGTACAGCCATCTGGAGCCGTTTCATTTTCAGTTCCTCATGTACAAGGCAATCTGATTTTCATTTTGCTCGGTCTTGTCTACTTGTTATGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

259

Amino Acids

28.42

Weight (kDa)

4.86

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 74 - 171 2.4e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 635
AccB1I GGYRCC 1 cut(s) 106
AccB7I CCANNNNNTGG 1 cut(s) 187
AccI GTMKAC 1 cut(s) 762
AccII CGCG 2 cut(s) 41, 398
AciI CCGC 6 cut(s) 39, 41, 50, 398, 437, 572
AclWI GGATC 2 cut(s) 35, 653
AcoI YGGCCR 1 cut(s) 538
AcuI CTGAAG 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 107
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 5 cut(s) 19, 60, 209, 687, 726
AfiI CCNNNNNNNGG 5 cut(s) 187, 204, 247, 391, 599
AgsI TTSAA 5 cut(s) 15, 292, 451, 520, 655
AluBI AGCT 2 cut(s) 120, 346
AluI AGCT 2 cut(s) 120, 346
AlwI GGATC 2 cut(s) 35, 653
AoxI GGCC 1 cut(s) 538
ApeKI GCWGC 1 cut(s) 511
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 578
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 2 cut(s) 491, 620
AvaII GGWCC 1 cut(s) 578
BalI TGGCCA 1 cut(s) 540
BanI GGYRCC 1 cut(s) 106
BarI GAAGNNNNNNTAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 523
BccI CCATC 2 cut(s) 482, 700
BceAI ACGGC 3 cut(s) 350, 388, 686
BcnI CCSGG 1 cut(s) 626
BfmI CTRYAG 2 cut(s) 252, 558
BfoI RGCGCY 1 cut(s) 110
BisI GCNGC 4 cut(s) 42, 51, 512, 573
BlsI GCNGC 4 cut(s) 43, 52, 513, 574
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 626
Bme18I GGWCC 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 4 cut(s) 108, 402, 441, 700
BmrFI CCNGG 1 cut(s) 626
BmsI GCATC 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 267, 299
BpmI CTGGAG 1 cut(s) 717
BpuMI CCSGG 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 5 cut(s) 39, 84, 198, 366, 541
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 5 cut(s) 187, 204, 247, 391, 599
Bse3DI GCAATG 1 cut(s) 610
BseDI CCNNGG 5 cut(s) 39, 84, 198, 366, 541
BseGI GGATG 1 cut(s) 315
BseLI CCNNNNNNNGG 5 cut(s) 187, 204, 247, 391, 599
BseMI GCAATG 1 cut(s) 610
BseXI GCAGC 1 cut(s) 523
Bsh1236I CGCG 2 cut(s) 41, 398
BshFI GGCC 1 cut(s) 540
BshNI GGYRCC 1 cut(s) 106
BsiSI CCGG 2 cut(s) 477, 626
BslFI GGGAC 2 cut(s) 401, 623
BslI CCNNNNNNNGG 5 cut(s) 187, 204, 247, 391, 599
BsmFI GGGAC 2 cut(s) 401, 623
BsnI GGCC 1 cut(s) 540
Bsp1407I TGTACA 2 cut(s) 685, 724
Bsp143I GATC 2 cut(s) 27, 658
BspACI CCGC 6 cut(s) 39, 41, 50, 398, 437, 572
BspANI GGCC 1 cut(s) 540
BspFNI CGCG 2 cut(s) 41, 398
BspHI TCATGA 1 cut(s) 776
BspLI GGNNCC 4 cut(s) 108, 402, 441, 700
BspPI GGATC 2 cut(s) 35, 653
BspT107I GGYRCC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 610
BsrGI TGTACA 2 cut(s) 685, 724
BssECI CCNNGG 5 cut(s) 39, 84, 198, 366, 541
BssMI GATC 2 cut(s) 27, 658
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 2 cut(s) 198, 541
Bst4CI ACNGT 3 cut(s) 187, 415, 498
BstACI GRCGYC 1 cut(s) 107
BstAUI TGTACA 2 cut(s) 685, 724
BstC8I GCNNGC 2 cut(s) 548, 586
BstDSI CCRYGG 2 cut(s) 39, 366
BstF5I GGATG 1 cut(s) 315
BstFNI CGCG 2 cut(s) 41, 398
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 2 cut(s) 30, 661
BstMBI GATC 2 cut(s) 27, 658
BstMWI GCNNNNNNNGC 4 cut(s) 47, 50, 498, 581
BstSCI CCNGG 1 cut(s) 624
BstSFI CTRYAG 2 cut(s) 252, 558
BstUI CGCG 2 cut(s) 41, 398
BstV1I GCAGC 1 cut(s) 523
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 1 cut(s) 540
BtgI CCRYGG 2 cut(s) 39, 366
BtsCI GGATG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 192, 503
Cac8I GCNNGC 2 cut(s) 548, 586
CciI TCATGA 1 cut(s) 776
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 578
Cfr42I CCGCGG 1 cut(s) 42
CseI GACGC 1 cut(s) 404
Csp6I GTAC 5 cut(s) 18, 59, 208, 686, 725
CviAII CATG 5 cut(s) 167, 422, 536, 722, 777
CviQI GTAC 5 cut(s) 18, 59, 208, 686, 725
DinI GGCGCC 1 cut(s) 108
DpnI GATC 2 cut(s) 29, 660
DpnII GATC 2 cut(s) 27, 658
DraIII CACNNNGTG 1 cut(s) 187
DrdI GACNNNNNNGTC 1 cut(s) 635
DseDI GACNNNNNNGTC 1 cut(s) 635
EaeI YGGCCR 1 cut(s) 538
Eco130I CCWWGG 2 cut(s) 198, 541
Eco47I GGWCC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 198, 541
EgeI GGCGCC 1 cut(s) 108
EheI GGCGCC 1 cut(s) 108
ErhI CCWWGG 2 cut(s) 198, 541
FaeI CATG 5 cut(s) 170, 425, 539, 725, 780
FaqI GGGAC 2 cut(s) 401, 623
FatI CATG 5 cut(s) 166, 421, 535, 721, 776
FauI CCCGC 1 cut(s) 46
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 4 cut(s) 42, 51, 512, 573
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 4 cut(s) 42, 51, 512, 573
GlaI GCGC 1 cut(s) 108
GluI GCNGC 4 cut(s) 42, 51, 512, 573
GsuI CTGGAG 1 cut(s) 717
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 1 cut(s) 540
HapII CCGG 2 cut(s) 477, 626
HgaI GACGC 1 cut(s) 404
HhaI GCGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 5 cut(s) 170, 425, 539, 725, 780
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 2 cut(s) 194, 617
HpaII CCGG 2 cut(s) 477, 626
HphI GGTGA 2 cut(s) 491, 620
Hpy166II GTNNAC 3 cut(s) 59, 593, 763
Hpy188I TCNGA 3 cut(s) 85, 394, 738
Hpy188III TCNNGA 3 cut(s) 520, 696, 777
Hpy8I GTNNAC 3 cut(s) 59, 593, 763
HpyCH4III ACNGT 3 cut(s) 187, 415, 498
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 1 cut(s) 501
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 50, 498, 581
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 5 cut(s) 170, 425, 539, 725, 780
HspAI GCGC 1 cut(s) 107
KasI GGCGCC 1 cut(s) 106
KspI CCGCGG 1 cut(s) 42
Kzo9I GATC 2 cut(s) 27, 658
LmnI GCTCC 3 cut(s) 38, 400, 698
LpnPI CCDG 8 cut(s) 254, 490, 561, 585, 594, 639, 681, 681
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 1 cut(s) 468
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 331, 529
MalI GATC 2 cut(s) 29, 660
MboI GATC 2 cut(s) 27, 658
MboII GAAGA 2 cut(s) 108, 111
MflI RGATCY 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 540
MluCI AATT 2 cut(s) 235, 565
MluNI TGGCCA 1 cut(s) 540
Mly113I GGCGCC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 5 cut(s) 79, 227, 242, 448, 729
Mox20I TGGCCA 1 cut(s) 540
MscI TGGCCA 1 cut(s) 540
Msp20I TGGCCA 1 cut(s) 540
MspA1I CMGCKG 2 cut(s) 41, 50
MspI CCGG 2 cut(s) 477, 626
MspR9I CCNGG 1 cut(s) 626
MvnI CGCG 2 cut(s) 41, 398
MwoI GCNNNNNNNGC 4 cut(s) 47, 50, 498, 581
NarI GGCGCC 1 cut(s) 107
NciI CCSGG 1 cut(s) 626
NdeII GATC 2 cut(s) 27, 658
NlaIII CATG 5 cut(s) 170, 425, 539, 725, 780
NlaIV GGNNCC 4 cut(s) 108, 402, 441, 700
NmuCI GTSAC 1 cut(s) 331
PagI TCATGA 1 cut(s) 776
PfeI GAWTC 1 cut(s) 617
PflMI CCANNNNNTGG 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 624
PkrI GCNGC 4 cut(s) 43, 52, 513, 574
PleI GAGTC 1 cut(s) 188
PluTI GGCGCC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 188
PspN4I GGNNCC 4 cut(s) 108, 402, 441, 700
PspPI GGNCC 1 cut(s) 578
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 5 cut(s) 19, 60, 209, 687, 726
RsaNI GTAC 5 cut(s) 18, 59, 208, 686, 725
SacII CCGCGG 1 cut(s) 42
SatI GCNGC 4 cut(s) 42, 51, 512, 573
Sau3AI GATC 2 cut(s) 27, 658
Sau96I GGNCC 1 cut(s) 578
ScaI AGTACT 1 cut(s) 19
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 626
SetI ASST 6 cut(s) 122, 219, 234, 326, 333, 348
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 2 cut(s) 252, 558
SfoI GGCGCC 1 cut(s) 108
Sfr303I CCGCGG 1 cut(s) 42
SgrBI CCGCGG 1 cut(s) 42
SinI GGWCC 1 cut(s) 578
Sse9I AATT 2 cut(s) 235, 565
SsiI CCGC 6 cut(s) 39, 41, 50, 398, 437, 572
SspDI GGCGCC 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 624
StyI CCWWGG 2 cut(s) 198, 541
TaaI ACNGT 3 cut(s) 187, 415, 498
TaiI ACGT 1 cut(s) 333
TaqI TCGA 1 cut(s) 152
TaqII GACCGA 2 cut(s) 301, 743
TasI AATT 2 cut(s) 235, 565
TatI WGTACW 4 cut(s) 17, 58, 685, 724
TauI GCSGC 3 cut(s) 44, 53, 575
TfiI GAWTC 1 cut(s) 617
TscAI CASTG 2 cut(s) 192, 503
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 511
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 4 cut(s) 155, 630, 696, 733
TspRI CASTG 2 cut(s) 192, 503
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 762
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.