Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005440

Physical Location & Seq

Genomic Coordinates Reverse (-)

41520555 .. 41525437

Gene Structure 4883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAATTAATTCTGCCTGGCCATGCAGTTTTGAACACTGATACGAACCACTCGGTCGTCCAAACCTATAACGTCACAACGTACAAGCTGTGCGATTACGACTATGCCGTGGAGAACGATACAATCCAATGGTCGGAAACGGATCCGTCAAACACCGCCCCACACAATGTTTCGGTGGCAGTTCCTTTGTTGAAAGAGGGCATCACATATTTCTTTTCCGGTGATTATGATGGCGAACAGTGCAAGAATGGGCAGCACTTAAAGATAAATGTTACTCACAGACAAGGCTTGCCAAAGAGTATAGACTATTCCGCGGCAGGACCAGCAAGCAGTCCACAATCAGGCAATGGTGACGATGATCAATCCGGGACCCAATCGTCCCTAATTCCAACTTCAATGATCCCAAACCAGATGACAATTATGATGGCTACAGCAATCAATGTGGGTTTCACATTACAACAATTAGCCATGTACAAATCATGGAAATACACTAGCAAGTCTTCAAACACACAAAGGTGTCCAGTGGCAATCACCTTTCCAACGTGGGGGAGTATTGCTTTCAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

189

Amino Acids

20.71

Weight (kDa)

5.38

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08500
fragaria_vesca	FvH4_5g22740
malus_domestica	MD03G1156900.v1.1 MD11G1183800.v1.1
prunus_persica	Prupe.4G270100_v2.0.a1
pyrus_communis	pycom12561g00210 pycom5153684g00100
rosa_chinensis	RchiOBHm_Chr5g0044801 RchiOBHm_Chr7g0211321
rosa_laevigata	RLG00000003010 RLG00000034298
rosa_multiflora	Rmu_sc0004567.1_g000014 Rmu_sc0010445.1_g000001 Rmu_sc0020779.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030860 Rroxscaffold_1G00036240 Rroxscaffold_3G00247930
rosa_rugosa	Rorug05G0218200 Rorug07G0125000
rosa_samantha	Rh5BG307800 Rh5CG334900 Rh5DG317900 Rh7AG257400 Rh7BG251500 Rh7CG274200 Rh7DG264400
rosa_wichuraiana	Rw5G027880 Rw5G027890 Rw7G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	376
AccII	CGCG	1 cut(s)	314
AciI	CCGC	3 cut(s)	156, 312, 314
AclWI	GGATC	3 cut(s)	137, 150, 394
AcoI	YGGCCR	1 cut(s)	19
AfaI	GTAC	2 cut(s)	83, 473
AfiI	CCNNNNNNNGG	3 cut(s)	133, 341, 545
AgsI	TTSAA	5 cut(s)	34, 193, 396, 504, 562
AjnI	CCWGG	1 cut(s)	16
AleI	CACNNNNGTG	1 cut(s)	514
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
AlwI	GGATC	3 cut(s)	137, 150, 394
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	253
AseI	ATTAAT	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	320, 369
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	3 cut(s)	233, 362, 523
AvaII	GGWCC	2 cut(s)	320, 369
BalI	TGGCCA	1 cut(s)	21
BamHI	GGATCC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	2 cut(s)	224, 418
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	18
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	367
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	429
BisI	GCNGC	2 cut(s)	254, 315
BlsI	GCNGC	2 cut(s)	255, 316
Bme1390I	CCNGG	2 cut(s)	18, 367
Bme18I	GGWCC	2 cut(s)	320, 369
BmgT120I	GGNCC	2 cut(s)	320, 369
BmiI	GGNNCC	3 cut(s)	144, 370, 371
BmrFI	CCNGG	2 cut(s)	18, 367
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	108, 312
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 341, 545
Bse1I	ACTGG	1 cut(s)	521
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	108, 312
BseLI	CCNNNNNNNGG	3 cut(s)	133, 341, 545
BseMI	GCAATG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	521
BseXI	GCAGC	1 cut(s)	265
Bsh1236I	CGCG	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	219, 366
BslFI	GGGAC	2 cut(s)	364, 382
BslI	CCNNNNNNNGG	3 cut(s)	133, 341, 545
BsmFI	GGGAC	2 cut(s)	364, 382
BsnI	GGCC	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	142, 358, 399
BspACI	CCGC	3 cut(s)	156, 312, 314
BspANI	GGCC	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	3 cut(s)	144, 370, 371
BspPI	GGATC	3 cut(s)	137, 150, 394
BsrDI	GCAATG	1 cut(s)	352
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	2 cut(s)	108, 312
BssMI	GATC	3 cut(s)	142, 358, 399
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	240
BstAUI	TGTACA	1 cut(s)	471
BstC8I	GCNNGC	2 cut(s)	290, 328
BstDSI	CCRYGG	2 cut(s)	108, 312
BstFNI	CGCG	1 cut(s)	314
BstKTI	GATC	3 cut(s)	145, 361, 402
BstMBI	GATC	3 cut(s)	142, 358, 399
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 323
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	16, 365
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	108, 312
BtsIMutI	CAGTG	3 cut(s)	36, 245, 528
Cac8I	GCNNGC	2 cut(s)	290, 328
Cfr13I	GGNCC	2 cut(s)	320, 369
Cfr42I	CCGCGG	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	82, 472
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	3 cut(s)	23, 469, 480
CviJI	RGCY	5 cut(s)	21, 88, 288, 428, 467
CviKI_1	RGCY	5 cut(s)	21, 88, 288, 428, 467
CviQI	GTAC	2 cut(s)	82, 472
DpnI	GATC	3 cut(s)	144, 360, 401
DpnII	GATC	3 cut(s)	142, 358, 399
DrdI	GACNNNNNNGTC	1 cut(s)	376
DseDI	GACNNNNNNGTC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	320, 369
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	16
FaeI	CATG	3 cut(s)	26, 472, 483
FaqI	GGGAC	2 cut(s)	364, 382
FatI	CATG	3 cut(s)	22, 468, 479
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	254, 315
Fsp4HI	GCNGC	2 cut(s)	254, 315
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	2 cut(s)	254, 315
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	2 cut(s)	219, 366
Hin1II	CATG	3 cut(s)	26, 472, 483
HpaII	CCGG	2 cut(s)	219, 366
HphI	GGTGA	3 cut(s)	233, 362, 523
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	3 cut(s)	72, 80, 542
HpyCH4V	TGCA	2 cut(s)	26, 243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 323
HpySE526I	ACGT	3 cut(s)	72, 80, 542
Hsp92II	CATG	3 cut(s)	26, 472, 483
KflI	GGGWCCC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	358
KspI	CCGCGG	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	142, 358, 399
LpnPI	CCDG	9 cut(s)	3, 30, 232, 303, 327, 336, 379, 422, 534
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	3 cut(s)	72, 80, 542
MaeIII	GTNAC	3 cut(s)	73, 271, 350
MalI	GATC	3 cut(s)	144, 360, 401
MboI	GATC	3 cut(s)	142, 358, 399
MboII	GAAGA	1 cut(s)	492
MflI	RGATCY	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	21
MluCI	AATT	5 cut(s)	5, 9, 384, 417, 461
MluNI	TGGCCA	1 cut(s)	21
MmeI	TCCRAC	3 cut(s)	114, 413, 563
MnlI	CCTC	1 cut(s)	190
Mox20I	TGGCCA	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	21
MseI	TTAA	2 cut(s)	8, 260
MslI	CAYNNNNRTG	1 cut(s)	514
Msp20I	TGGCCA	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	2 cut(s)	219, 366
MspR9I	CCNGG	2 cut(s)	18, 367
MvaI	CCWGG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	240, 323
NciI	CCSGG	1 cut(s)	367
NdeII	GATC	3 cut(s)	142, 358, 399
NlaIII	CATG	3 cut(s)	26, 472, 483
NlaIV	GGNNCC	3 cut(s)	144, 370, 371
NmuCI	GTSAC	2 cut(s)	73, 350
OliI	CACNNNNGTG	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	255, 316
PpuMI	RGGWCCY	1 cut(s)	369
PshBI	ATTAAT	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	144, 370, 371
PspPI	GGNCC	2 cut(s)	320, 369
PspPPI	RGGWCCY	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	2 cut(s)	83, 473
RsaNI	GTAC	2 cut(s)	82, 472
RseI	CAYNNNNRTG	1 cut(s)	514
SacII	CCGCGG	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	8, 260
SatI	GCNGC	2 cut(s)	254, 315
Sau3AI	GATC	3 cut(s)	142, 358, 399
Sau96I	GGNCC	2 cut(s)	320, 369
ScrFI	CCNGG	2 cut(s)	18, 367
SetI	ASST	7 cut(s)	68, 75, 83, 90, 518, 536, 545
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	429
Sfr303I	CCGCGG	1 cut(s)	315
SgrBI	CCGCGG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	320, 369
SmiMI	CAYNNNNRTG	1 cut(s)	514
Sse9I	AATT	5 cut(s)	5, 9, 384, 417, 461
SsiI	CCGC	3 cut(s)	156, 312, 314
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	16, 365
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	3 cut(s)	75, 83, 545
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	5 cut(s)	5, 9, 384, 417, 461
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	8, 260
Tru9I	TTAA	2 cut(s)	8, 260
TscAI	CASTG	3 cut(s)	43, 245, 528
TseFI	GTSAC	2 cut(s)	73, 350
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	2 cut(s)	73, 350
TspGWI	ACGGA	2 cut(s)	135, 155
TspRI	CASTG	3 cut(s)	43, 245, 528
VpaK11BI	GGWCC	2 cut(s)	320, 369
VspI	ATTAAT	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.