Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012561

Orthogroup ID

OG0005440

Physical Location & Seq

Genomic Coordinates Reverse (-)

300175 .. 303638

Gene Structure 3464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12561g00210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTATATACATATACAGTTGATGCCCTTTGTTCTTCAATATCCCCTCTCTCTGTTGTCAGTTTTCACCAACTCCAACCAAAAAACAATGGAACCATTACTACAGAGCAAGTACACTAGCTTGTTTTTTCTCCTTGTCCTTCTTCTTCCTCTTGTTATTCCTTCGTTTTCAGGAATATCAGGCGTTGAAGCTTACAAGAATTATACAGTCGGTGACTCTTCCGGTTGGTATGAATCTGTGAACTATCAGAAATGGGTTGCCGCCAAGACATTCAGCTTGGGAGATTTTCTCATTTTTAATACGGACACCAACCACTCAGTTGTGCAAACATATAACTTGACGACATACAAGCTGTGCGATTACAACGATGCTCTAGAAAACGACACAATGCAATGGTCGGCAGCTGACCCGTCAAACACGGCAGTACGCAAGGTGTCGGTGGCAGTGCCTTTGGAAAAGGAAGGGATGAACTATTTCTTTTCAGGGGATTATGATGGCGACCAATGCAAGAACGGGCAGCACTTTAAGATCAGCGTCGCTCACGGACAAGGGTTGCCAAAGAGTTTACAAAACCCAACCACACCCACACAGGACCAGTCCCCAGGTCCAGCAACAGCAAGCAGTCCCGGCGGGTCCCCATCTCCAGGTGGTGACGGCACTGATGATGGTTCTGTCCCGGATACAATTGTTCCTGCCAGTTTCGACCATCCCAAAGCGGATGACACTGCCACTGGCGATCATGATAAAGATTCATCTGATCGATCACTTTGTGTGAAGCACAATCACGGGATGCTATTTAGGGTTTTCATGTTGTTAGGGTTTCTCTACTGCTGCCTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

281

Amino Acids

30.79

Weight (kDa)

4.98

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08500
fragaria_vesca	FvH4_5g22740
malus_domestica	MD03G1156900.v1.1 MD11G1183800.v1.1
prunus_persica	Prupe.4G270100_v2.0.a1
pyrus_communis	pycom12561g00210 pycom5153684g00100
rosa_chinensis	RchiOBHm_Chr5g0044801 RchiOBHm_Chr7g0211321
rosa_laevigata	RLG00000003010 RLG00000034298
rosa_multiflora	Rmu_sc0004567.1_g000014 Rmu_sc0010445.1_g000001 Rmu_sc0020779.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030860 Rroxscaffold_1G00036240 Rroxscaffold_3G00247930
rosa_rugosa	Rorug05G0218200 Rorug07G0125000
rosa_samantha	Rh5BG307800 Rh5CG334900 Rh5DG317900 Rh7AG257400 Rh7BG251500 Rh7CG274200 Rh7DG264400
rosa_wichuraiana	Rw5G027880 Rw5G027890 Rw7G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	261, 630, 716
AdeI	CACNNNGTG	1 cut(s)	770
AfaI	GTAC	2 cut(s)	113, 426
AfiI	CCNNNNNNNGG	1 cut(s)	644
AgsI	TTSAA	2 cut(s)	38, 188
AjnI	CCWGG	2 cut(s)	601, 643
AluBI	AGCT	5 cut(s)	120, 191, 276, 352, 404
AluI	AGCT	5 cut(s)	120, 191, 276, 352, 404
ApeKI	GCWGC	3 cut(s)	401, 517, 831
Asp700I	GAANNNNTTC	1 cut(s)	473
AspS9I	GGNCC	3 cut(s)	592, 605, 633
AsuC2I	CCSGG	2 cut(s)	627, 677
AsuHPI	GGTGA	3 cut(s)	58, 224, 662
AvaII	GGWCC	3 cut(s)	592, 605, 633
BaeI	ACNNNNGTAYC	2 cut(s)	672, 705
BbvI	GCAGC	3 cut(s)	413, 529, 818
BccI	CCATC	4 cut(s)	488, 646, 659, 714
BceAI	ACGGC	2 cut(s)	435, 670
BciT130I	CCWGG	2 cut(s)	603, 645
BciVI	GTATCC	1 cut(s)	673
BcnI	CCSGG	2 cut(s)	627, 677
BfaI	CTAG	2 cut(s)	117, 374
BfmI	CTRYAG	1 cut(s)	101
BfuI	GTATCC	1 cut(s)	673
BisI	GCNGC	4 cut(s)	261, 402, 518, 832
BlsI	GCNGC	4 cut(s)	262, 403, 519, 833
Bme1390I	CCNGG	4 cut(s)	603, 627, 645, 677
Bme18I	GGWCC	3 cut(s)	592, 605, 633
BmgT120I	GGNCC	3 cut(s)	592, 605, 633
BmiI	GGNNCC	3 cut(s)	93, 634, 635
BmrFI	CCNGG	4 cut(s)	603, 627, 645, 677
BmsI	GCATC	3 cut(s)	12, 358, 780
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	627
BpuMI	CCSGG	2 cut(s)	627, 677
Bsa29I	ATCGAT	1 cut(s)	760
BsaJI	CCNNGG	1 cut(s)	601
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse1I	ACTGG	3 cut(s)	595, 696, 736
Bse3DI	GCAATG	1 cut(s)	398
BseBI	CCWGG	2 cut(s)	603, 645
BseCI	ATCGAT	1 cut(s)	760
BseDI	CCNNGG	1 cut(s)	601
BseGI	GGATG	4 cut(s)	471, 706, 724, 795
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	595, 696, 736
BseXI	GCAGC	3 cut(s)	413, 529, 818
BshVI	ATCGAT	1 cut(s)	760
BsiSI	CCGG	3 cut(s)	222, 627, 677
BslFI	GGGAC	4 cut(s)	583, 609, 619, 659
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmFI	GGGAC	4 cut(s)	583, 609, 619, 659
Bsp143I	GATC	4 cut(s)	528, 736, 757, 761
BspACI	CCGC	3 cut(s)	261, 630, 716
BspCNI	CTCAG	1 cut(s)	329
BspDI	ATCGAT	1 cut(s)	760
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	3 cut(s)	93, 634, 635
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	3 cut(s)	595, 696, 736
BssECI	CCNNGG	1 cut(s)	601
BssMI	GATC	4 cut(s)	528, 736, 757, 761
Bst2UI	CCWGG	2 cut(s)	603, 645
Bst4CI	ACNGT	2 cut(s)	18, 208
Bst6I	CTCTTC	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	1 cut(s)	316
BstF5I	GGATG	4 cut(s)	471, 706, 724, 795
BstKTI	GATC	4 cut(s)	531, 739, 760, 764
BstMBI	GATC	4 cut(s)	528, 736, 757, 761
BstMWI	GCNNNNNNNGC	2 cut(s)	504, 627
BstNI	CCWGG	2 cut(s)	603, 645
BstSCI	CCNGG	4 cut(s)	601, 625, 643, 675
BstSFI	CTRYAG	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	413, 529, 818
Bsu15I	ATCGAT	1 cut(s)	760
BsuI	GTATCC	1 cut(s)	673
BsuTUI	ATCGAT	1 cut(s)	760
BtsCI	GGATG	4 cut(s)	471, 706, 724, 795
BtsI	GCAGTG	2 cut(s)	450, 723
BtsIMutI	CAGTG	4 cut(s)	450, 657, 723, 729
Cac8I	GCNNGC	1 cut(s)	619
CciI	TCATGA	1 cut(s)	739
Cfr13I	GGNCC	3 cut(s)	592, 605, 633
ClaI	ATCGAT	1 cut(s)	760
CseI	GACGC	1 cut(s)	523
Csp6I	GTAC	2 cut(s)	112, 425
CviAII	CATG	2 cut(s)	740, 808
CviJI	RGCY	5 cut(s)	120, 191, 276, 352, 404
CviKI_1	RGCY	5 cut(s)	120, 191, 276, 352, 404
CviQI	GTAC	2 cut(s)	112, 425
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	4 cut(s)	530, 738, 759, 763
DpnII	GATC	4 cut(s)	528, 736, 757, 761
DraIII	CACNNNGTG	1 cut(s)	770
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco47I	GGWCC	3 cut(s)	592, 605, 633
EcoO109I	RGGNCCY	1 cut(s)	633
EcoRII	CCWGG	2 cut(s)	601, 643
FaeI	CATG	2 cut(s)	743, 811
FaqI	GGGAC	4 cut(s)	583, 609, 619, 659
FatI	CATG	2 cut(s)	739, 807
FauI	CCCGC	1 cut(s)	623
Fnu4HI	GCNGC	4 cut(s)	261, 402, 518, 832
FokI	GGATG	4 cut(s)	478, 693, 731, 802
Fsp4HI	GCNGC	4 cut(s)	261, 402, 518, 832
FspBI	CTAG	2 cut(s)	117, 374
GluI	GCNGC	4 cut(s)	261, 402, 518, 832
GsuI	CTGGAG	1 cut(s)	627
HapII	CCGG	3 cut(s)	222, 627, 677
HgaI	GACGC	1 cut(s)	523
Hin1II	CATG	2 cut(s)	743, 811
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	3 cut(s)	215, 233, 749
HpaII	CCGG	3 cut(s)	222, 627, 677
HphI	GGTGA	3 cut(s)	58, 224, 662
Hpy166II	GTNNAC	3 cut(s)	114, 241, 566
Hpy188I	TCNGA	2 cut(s)	249, 757
Hpy188III	TCNNGA	3 cut(s)	171, 374, 740
Hpy8I	GTNNAC	3 cut(s)	114, 241, 566
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	3 cut(s)	149, 171, 455
HpyCH4III	ACNGT	2 cut(s)	18, 208
HpyCH4V	TGCA	3 cut(s)	325, 391, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	504, 627
HpyF3I	CTNAG	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	743, 811
KflI	GGGWCCC	1 cut(s)	633
Kzo9I	GATC	4 cut(s)	528, 736, 757, 761
Lsp1109I	GCAGC	3 cut(s)	413, 529, 818
LweI	GCATC	3 cut(s)	12, 358, 780
MaeI	CTAG	2 cut(s)	117, 374
MaeIII	GTNAC	2 cut(s)	212, 650
MalI	GATC	4 cut(s)	530, 738, 759, 763
MboI	GATC	4 cut(s)	528, 736, 757, 761
MboII	GAAGA	4 cut(s)	26, 134, 137, 210
MfeI	CAATTG	1 cut(s)	684
MluCI	AATT	2 cut(s)	199, 684
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	2 cut(s)	56, 159
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	2 cut(s)	297, 525
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	3 cut(s)	222, 627, 677
MspR9I	CCNGG	4 cut(s)	603, 627, 645, 677
MunI	CAATTG	1 cut(s)	684
MvaI	CCWGG	2 cut(s)	603, 645
MwoI	GCNNNNNNNGC	2 cut(s)	504, 627
NciI	CCSGG	2 cut(s)	627, 677
NdeII	GATC	4 cut(s)	528, 736, 757, 761
NlaIII	CATG	2 cut(s)	743, 811
NlaIV	GGNNCC	3 cut(s)	93, 634, 635
NmuCI	GTSAC	2 cut(s)	212, 650
PagI	TCATGA	1 cut(s)	739
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	233, 749
PfoI	TCCNGGA	1 cut(s)	675
PkrI	GCNGC	4 cut(s)	262, 403, 519, 833
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	633
Psp5II	RGGWCCY	1 cut(s)	633
Psp6I	CCWGG	2 cut(s)	601, 643
PspGI	CCWGG	2 cut(s)	601, 643
PspN4I	GGNNCC	3 cut(s)	93, 634, 635
PspPI	GGNCC	3 cut(s)	592, 605, 633
PspPPI	RGGWCCY	1 cut(s)	633
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	2 cut(s)	113, 426
RsaNI	GTAC	2 cut(s)	112, 425
SaqAI	TTAA	2 cut(s)	297, 525
SatI	GCNGC	4 cut(s)	261, 402, 518, 832
Sau3AI	GATC	4 cut(s)	528, 736, 757, 761
Sau96I	GGNCC	3 cut(s)	592, 605, 633
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	4 cut(s)	603, 627, 645, 677
SetI	ASST	8 cut(s)	122, 193, 278, 354, 406, 435, 607, 649
SfaNI	GCATC	3 cut(s)	12, 358, 780
SfcI	CTRYAG	1 cut(s)	101
SinI	GGWCC	3 cut(s)	592, 605, 633
Sse9I	AATT	2 cut(s)	199, 684
SsiI	CCGC	3 cut(s)	261, 630, 716
SspMI	CTAG	2 cut(s)	117, 374
StyD4I	CCNGG	4 cut(s)	601, 625, 643, 675
TaaI	ACNGT	2 cut(s)	18, 208
TaqI	TCGA	2 cut(s)	702, 760
TasI	AATT	2 cut(s)	199, 684
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	233, 749
Tru1I	TTAA	2 cut(s)	297, 525
Tru9I	TTAA	2 cut(s)	297, 525
TscAI	CASTG	4 cut(s)	450, 664, 730, 736
TseFI	GTSAC	2 cut(s)	212, 650
TseI	GCWGC	3 cut(s)	401, 517, 831
Tsp45I	GTSAC	2 cut(s)	212, 650
TspDTI	ATGAA	4 cut(s)	246, 482, 741, 796
TspGWI	ACGGA	2 cut(s)	317, 558
TspRI	CASTG	4 cut(s)	450, 664, 730, 736
VpaK11BI	GGWCC	3 cut(s)	592, 605, 633
XbaI	TCTAGA	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	2 cut(s)	117, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.