Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010445.1

Orthogroup ID

OG0005440

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 495

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010445.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

gttttcaatactgatacgaaccactcggtcatccaaacctataacgtcactacatacaagctgtgtgattacaacaatgccctggacaatgatacaatccaatggtcggaaggggagccgtcaaacaccgtcccacatgatgtttcggtggcggttcctttgttgaaagagggcatcacatatttcttttccggtgattatgatggcgaacagtgcaagaatgggcagcacttcaagataaatgtgactcacggacaaggcttgccaaagactttagacaattcggcggcaggaccagcaagcagtccacaatctggcaatggtgatgatgaatcaatcccggacacaatcgtccctaatgccaacttcaatgatcccaaaccagatgacaatgatgatataaagccatctggagccgtttcattttcagttcctcatgtacaaggcaatctgattttcattttgctcggtcttgtctacttgttatggtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

164

Amino Acids

17.8

Weight (kDa)

4.28

Isoelectric Point (pI)

17.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08500
fragaria_vesca	FvH4_5g22740
malus_domestica	MD03G1156900.v1.1 MD11G1183800.v1.1
prunus_persica	Prupe.4G270100_v2.0.a1
pyrus_communis	pycom12561g00210 pycom5153684g00100
rosa_chinensis	RchiOBHm_Chr5g0044801 RchiOBHm_Chr7g0211321
rosa_laevigata	RLG00000003010 RLG00000034298
rosa_multiflora	Rmu_sc0004567.1_g000014 Rmu_sc0010445.1_g000001 Rmu_sc0020779.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030860 Rroxscaffold_1G00036240 Rroxscaffold_3G00247930
rosa_rugosa	Rorug05G0218200 Rorug07G0125000
rosa_samantha	Rh5BG307800 Rh5CG334900 Rh5DG317900 Rh7AG257400 Rh7BG251500 Rh7CG274200 Rh7DG264400
rosa_wichuraiana	Rw5G027880 Rw5G027890 Rw7G022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	2 cut(s)	152, 287
AclWI	GGATC	1 cut(s)	368
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	2 cut(s)	106, 314
AgsI	TTSAA	4 cut(s)	7, 166, 235, 370
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
AlwI	GGATC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	206, 335
AvaII	GGWCC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	197, 415
BceAI	ACGGC	2 cut(s)	103, 401
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	341
BisI	GCNGC	2 cut(s)	227, 288
BlsI	GCNGC	2 cut(s)	228, 289
Bme1390I	CCNGG	2 cut(s)	83, 341
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	3 cut(s)	117, 156, 415
BmrFI	CCNGG	2 cut(s)	83, 341
BmsI	GCATC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 314
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	106, 314
BseMI	GCAATG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	192, 341
BslFI	GGGAC	2 cut(s)	116, 338
BslI	CCNNNNNNNGG	2 cut(s)	106, 314
BsmFI	GGGAC	2 cut(s)	116, 338
Bsp1407I	TGTACA	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	2 cut(s)	152, 287
BspHI	TCATGA	1 cut(s)	491
BspLI	GGNNCC	3 cut(s)	117, 156, 415
BspPI	GGATC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	325
BsrGI	TGTACA	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	130, 213
BstAUI	TGTACA	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	263, 301
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 296
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	81, 339
BstV1I	GCAGC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	263, 301
CciI	TCATGA	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	3 cut(s)	137, 437, 492
CviJI	RGCY	5 cut(s)	61, 118, 261, 406, 416
CviKI_1	RGCY	5 cut(s)	61, 118, 261, 406, 416
CviQI	GTAC	1 cut(s)	440
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	3 cut(s)	140, 440, 495
FaiI	YATR	9 cut(s)	42, 55, 138, 181, 201, 401, 438, 487, 493
FaqI	GGGAC	2 cut(s)	116, 338
FatI	CATG	3 cut(s)	136, 436, 491
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	2 cut(s)	227, 288
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	227, 288
GluI	GCNGC	2 cut(s)	227, 288
GsuI	CTGGAG	1 cut(s)	432
HapII	CCGG	2 cut(s)	192, 341
Hin1II	CATG	3 cut(s)	140, 440, 495
HinfI	GANTC	2 cut(s)	247, 332
HpaII	CCGG	2 cut(s)	192, 341
HphI	GGTGA	2 cut(s)	206, 335
Hpy166II	GTNNAC	2 cut(s)	308, 478
Hpy188I	TCNGA	2 cut(s)	109, 453
Hpy188III	TCNNGA	3 cut(s)	235, 411, 492
Hpy8I	GTNNAC	2 cut(s)	308, 478
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	2 cut(s)	130, 213
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 296
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	140, 440, 495
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	2 cut(s)	115, 413
LpnPI	CCDG	9 cut(s)	68, 95, 205, 276, 300, 309, 354, 396, 396
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	183
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	46, 244
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	2 cut(s)	163, 444
MspI	CCGG	2 cut(s)	192, 341
MspR9I	CCNGG	2 cut(s)	83, 341
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	213, 296
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	140, 440, 495
NlaIV	GGNNCC	3 cut(s)	117, 156, 415
NmuCI	GTSAC	2 cut(s)	46, 244
PagI	TCATGA	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	332
PflMI	CCANNNNNTGG	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	228, 289
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	3 cut(s)	117, 156, 415
PspPI	GGNCC	1 cut(s)	293
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
SatI	GCNGC	2 cut(s)	227, 288
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	83, 341
SetI	ASST	3 cut(s)	41, 48, 63
SfaNI	GCATC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	293
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	2 cut(s)	152, 287
StyD4I	CCNGG	2 cut(s)	81, 339
TaaI	ACNGT	2 cut(s)	130, 213
TaiI	ACGT	1 cut(s)	48
TaqII	GACCGA	2 cut(s)	16, 458
TasI	AATT	1 cut(s)	280
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	332
TscAI	CASTG	1 cut(s)	218
TseFI	GTSAC	2 cut(s)	46, 244
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	2 cut(s)	46, 244
TspDTI	ATGAA	3 cut(s)	345, 411, 448
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	218
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.