Rh7AG257400

Blue copper protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005440
Physical Location & Seq
Reverse (-)
26186860 .. 26188391
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG257400.1

Sequence Viewer

Length: 609 bp
ATGGACGTCTCCATAAAACGGCATGGCCATTTGTGCTTCACATGTAGCCACTCAAAACAAAGACTCCCACCGACGCCTTCTCCGTTTATCCTCTTTAAGCAGCTCATAGTTTTCAATACTGATACGAACCACTCGGTCGTCCAAACCTATAACATGACAACGTACAAGCTGTGCGATTATGACGACGCCGAGGAGAAGGATATAATTCAATGGTCAGAAGCGAACCCGTCAAACACCGCCACACACGATGTGTCGGTGGCAGTTGCTTTGTTAAAAGAGGGCATCACATATTTCTTTTCCGGTGATTATGATGGCGAACAGTGCCAGAATGGGCAGCACTTCAAGTTAAATGTTACTCACGGACAAGGCTTGCCAAAGAGTTTAGACGATTCCCCGGCAGGACCAGCAAGCAGTCCACAGTCAAGCAATGGAGACGATGAATCAATCCCGGACACAATCGTCCCTAATTCCAACTTCAATGACCCCAAACAAGAAGATGCCAATGATGATAAACAGCCATCTGGATCCGTTTCATTTTCAGTTCGGCCTCATGTACAAGGCAATCTGATTTTCGTTTTGCTAGGTCTTGTCTACTTGTTGTACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

202

Amino Acids

22.3

Weight (kDa)

4.84

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 458
AatII GACGTC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 591
AciI CCGC 1 cut(s) 237
AclWI GGATC 2 cut(s) 519, 532
AcoI YGGCCR 1 cut(s) 25
AcyI GRCGYC 3 cut(s) 6, 74, 186
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 3 cut(s) 164, 555, 602
AfiI CCNNNNNNNGG 1 cut(s) 18
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 4 cut(s) 115, 209, 343, 478
AluBI AGCT 2 cut(s) 103, 169
AluI AGCT 2 cut(s) 103, 169
Alw26I GTCTC 2 cut(s) 13, 426
AlwI GGATC 2 cut(s) 519, 532
AoxI GGCC 2 cut(s) 25, 545
ApeKI GCWGC 2 cut(s) 100, 334
AspS9I GGNCC 1 cut(s) 401
AsuC2I CCSGG 2 cut(s) 395, 449
AsuHPI GGTGA 1 cut(s) 314
AvaII GGWCC 1 cut(s) 401
BalI TGGCCA 1 cut(s) 27
BamHI GGATCC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 112, 346
BccI CCATC 2 cut(s) 305, 526
BceAI ACGGC 1 cut(s) 35
BcnI CCSGG 2 cut(s) 395, 449
BcoDI GTCTC 2 cut(s) 13, 426
BfaI CTAG 1 cut(s) 581
BisI GCNGC 2 cut(s) 101, 335
BlsI GCNGC 2 cut(s) 102, 336
Bme1390I CCNGG 2 cut(s) 395, 449
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 2 cut(s) 395, 449
BmsI GCATC 2 cut(s) 291, 487
BpuMI CCSGG 2 cut(s) 395, 449
BsaHI GRCGYC 3 cut(s) 6, 74, 186
BsaJI CCNNGG 2 cut(s) 189, 393
BsaWI WCCGGW 1 cut(s) 299
BsaXI ACNNNNNCTCC 4 cut(s) 48, 64, 78, 94
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 433
BseDI CCNNGG 2 cut(s) 189, 393
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 112, 346
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 27, 547
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 3 cut(s) 300, 395, 449
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 13, 426
BsmBI CGTCTC 2 cut(s) 13, 426
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 2 cut(s) 27, 547
Bsp1407I TGTACA 1 cut(s) 553
Bsp143I GATC 1 cut(s) 524
BspACI CCGC 1 cut(s) 237
BspANI GGCC 2 cut(s) 27, 547
BspHI TCATGA 1 cut(s) 605
BspLI GGNNCC 1 cut(s) 526
BspPI GGATC 2 cut(s) 519, 532
BsrDI GCAATG 1 cut(s) 433
BsrGI TGTACA 1 cut(s) 553
BssECI CCNNGG 2 cut(s) 189, 393
BssMI GATC 1 cut(s) 524
BssNI GRCGYC 3 cut(s) 6, 74, 186
Bst4CI ACNGT 2 cut(s) 321, 420
BstACI GRCGYC 3 cut(s) 6, 74, 186
BstAUI TGTACA 1 cut(s) 553
BstC8I GCNNGC 2 cut(s) 371, 409
BstKTI GATC 1 cut(s) 527
BstMAI GTCTC 2 cut(s) 13, 426
BstMBI GATC 1 cut(s) 524
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 3 cut(s) 33, 321, 404
BstNSI RCATGY 1 cut(s) 45
BstSCI CCNGG 2 cut(s) 393, 447
BstV1I GCAGC 2 cut(s) 112, 346
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BsuRI GGCC 2 cut(s) 27, 547
BtsIMutI CAGTG 1 cut(s) 326
Cac8I GCNNGC 2 cut(s) 371, 409
CciI TCATGA 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 2 cut(s) 82, 194
Csp6I GTAC 3 cut(s) 163, 554, 601
CviAII CATG 5 cut(s) 23, 42, 154, 551, 606
CviJI RGCY 7 cut(s) 27, 48, 103, 169, 369, 517, 547
CviKI_1 RGCY 7 cut(s) 27, 48, 103, 169, 369, 517, 547
CviQI GTAC 3 cut(s) 163, 554, 601
DpnI GATC 1 cut(s) 526
DpnII GATC 1 cut(s) 524
DraIII CACNNNGTG 1 cut(s) 250
DrdI GACNNNNNNGTC 1 cut(s) 458
DseDI GACNNNNNNGTC 1 cut(s) 458
EaeI YGGCCR 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 401
Esp3I CGTCTC 2 cut(s) 13, 426
FaeI CATG 5 cut(s) 26, 45, 157, 554, 609
FaqI GGGAC 1 cut(s) 446
FatI CATG 5 cut(s) 22, 41, 153, 550, 605
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 2 cut(s) 101, 335
Fsp4HI GCNGC 2 cut(s) 101, 335
FspBI CTAG 1 cut(s) 581
GluI GCNGC 2 cut(s) 101, 335
HaeIII GGCC 2 cut(s) 27, 547
HapII CCGG 3 cut(s) 300, 395, 449
HgaI GACGC 2 cut(s) 82, 194
Hin1I GRCGYC 3 cut(s) 6, 74, 186
Hin1II CATG 5 cut(s) 26, 45, 157, 554, 609
HinfI GANTC 3 cut(s) 63, 389, 440
HpaII CCGG 3 cut(s) 300, 395, 449
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 416, 592
Hpy188I TCNGA 2 cut(s) 217, 567
Hpy188III TCNNGA 2 cut(s) 522, 606
Hpy8I GTNNAC 2 cut(s) 416, 592
Hpy99I CGWCG 2 cut(s) 76, 188
HpyAV CCTTC 2 cut(s) 87, 190
HpyCH4III ACNGT 2 cut(s) 321, 420
HpyCH4IV ACGT 2 cut(s) 6, 161
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 321, 404
HpySE526I ACGT 2 cut(s) 6, 161
Hsp92I GRCGYC 3 cut(s) 6, 74, 186
Hsp92II CATG 5 cut(s) 26, 45, 157, 554, 609
Kzo9I GATC 1 cut(s) 524
LpnPI CCDG 7 cut(s) 313, 338, 384, 408, 417, 462, 507
Lsp1109I GCAGC 2 cut(s) 112, 346
LweI GCATC 2 cut(s) 291, 487
MaeI CTAG 1 cut(s) 581
MaeII ACGT 2 cut(s) 6, 161
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 526
MboI GATC 1 cut(s) 524
MboII GAAGA 1 cut(s) 506
MflI RGATCY 1 cut(s) 524
MlsI TGGCCA 1 cut(s) 27
MluCI AATT 2 cut(s) 204, 466
MluNI TGGCCA 1 cut(s) 27
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 4 cut(s) 101, 184, 271, 558
Mox20I TGGCCA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 27
MseI TTAA 3 cut(s) 96, 272, 347
Msp20I TGGCCA 1 cut(s) 27
MspI CCGG 3 cut(s) 300, 395, 449
MspR9I CCNGG 2 cut(s) 395, 449
MwoI GCNNNNNNNGC 3 cut(s) 33, 321, 404
NciI CCSGG 2 cut(s) 395, 449
NdeII GATC 1 cut(s) 524
NlaIII CATG 5 cut(s) 26, 45, 157, 554, 609
NlaIV GGNNCC 1 cut(s) 526
NmeAIII GCCGAG 1 cut(s) 214
NspI RCATGY 1 cut(s) 45
PagI TCATGA 1 cut(s) 605
PciI ACATGT 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PfeI GAWTC 2 cut(s) 389, 440
PfoI TCCNGGA 1 cut(s) 447
PkrI GCNGC 2 cut(s) 102, 336
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PscI ACATGT 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 1 cut(s) 524
RsaI GTAC 3 cut(s) 164, 555, 602
RsaNI GTAC 3 cut(s) 163, 554, 601
SaqAI TTAA 3 cut(s) 96, 272, 347
SatI GCNGC 2 cut(s) 101, 335
Sau3AI GATC 1 cut(s) 524
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 395, 449
SetI ASST 6 cut(s) 9, 105, 149, 164, 171, 586
SfaNI GCATC 2 cut(s) 291, 487
SinI GGWCC 1 cut(s) 401
Sse9I AATT 2 cut(s) 204, 466
SsiI CCGC 1 cut(s) 237
SspMI CTAG 1 cut(s) 581
StyD4I CCNGG 2 cut(s) 393, 447
TaaI ACNGT 2 cut(s) 321, 420
TaiI ACGT 2 cut(s) 9, 164
TaqII GACCGA 1 cut(s) 124
TasI AATT 2 cut(s) 204, 466
TatI WGTACW 2 cut(s) 553, 600
TfiI GAWTC 2 cut(s) 389, 440
Tru1I TTAA 3 cut(s) 96, 272, 347
Tru9I TTAA 3 cut(s) 96, 272, 347
TscAI CASTG 1 cut(s) 326
TseI GCWGC 2 cut(s) 100, 334
TspDTI ATGAA 2 cut(s) 453, 522
TspGWI ACGGA 3 cut(s) 72, 375, 517
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 401
XceI RCATGY 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 591
XspI CTAG 1 cut(s) 581
ZraI GACGTC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.