Rw7G022000

Blue copper protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005440
Physical Location & Seq
Reverse (-)
25670232 .. 25671651
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022000.1

Sequence Viewer

Length: 741 bp
ATGGAGGAGACGCGAAATAAGGTTCTCATCACCTCAGCAGGTTTTCTTATTCTTGTTTCAGTTTCCAGTAATTCTGTTCATGCCTACAAGAACCACACAGTGGGCGACTCCTTGGGTTGGTACGACAACCTCCAAAAGCCTGATCTTAATTACCAGAACTGGGCTGCAGCCAACAACTTCAGCTTGGGAGATTTTCTCATTTTCAATACTGATACGAACCACTCGGTCGTCCAAACCTATAACATGACAACGTACAAGCTGTGCGATTATGACGACGCCGAGGAGAAGGATATAATTCAATGGTCGGAAGCAAACCCGTCAAACACTGCCACACACGATGTGTCGGTGGCAGTTCCTTTGTTAAAAGAGGGCATCACATATTTCTTTTCCGGTGATTATGATGGCGAACAGTGCCTGAATGGGCAGCACTTCAAGATAAATGTTACTCATGGACAAGGCTTGCCAAAGAGTTTAGACGATTCCCCGGCGGGACCAGCAAGCAGTCCGCAGTCAAGCAATGGAGACGATGAATCAATCCCGGACACAATCGTCCCTAATTCCAACTTCAATGACCCCAAACAAGAAGATGACAATGATGATAAACAGCCATCTGGATCCGTTTCATTTTCAGTTCCTCACGTACAAGGCAATCTGAAAGTCTTGTCTACTTGTTGTACTCATGATTTATTTAGGGGAGTGAAATTTGCACCCCCAATATTACAATCTGCACTTCCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

246

Amino Acids

26.94

Weight (kDa)

4.51

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 142 9.1e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 29
AccB7I CCANNNNNTGG 1 cut(s) 100
AccI GTMKAC 1 cut(s) 665
AccII CGCG 1 cut(s) 13
AciI CCGC 2 cut(s) 488, 506
AclWI GGATC 2 cut(s) 609, 622
AcsI RAATTY 1 cut(s) 701
AcuI CTGAAG 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 276
AdeI CACNNNGTG 2 cut(s) 100, 340
AfaI GTAC 4 cut(s) 122, 254, 642, 676
AfiI CCNNNNNNNGG 3 cut(s) 100, 117, 160
AgsI TTSAA 4 cut(s) 205, 299, 433, 568
AluBI AGCT 2 cut(s) 183, 259
AluI AGCT 2 cut(s) 183, 259
Alw26I GTCTC 2 cut(s) 2, 516
AlwI GGATC 2 cut(s) 609, 622
AlwNI CAGNNNCTG 1 cut(s) 415
ApeKI GCWGC 3 cut(s) 164, 167, 424
ApoI RAATTY 1 cut(s) 701
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 2 cut(s) 485, 539
AsuHPI GGTGA 2 cut(s) 22, 404
AvaII GGWCC 1 cut(s) 491
BamHI GGATCC 1 cut(s) 614
BbvCI CCTCAGC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 151, 179, 436
BccI CCATC 2 cut(s) 395, 616
BcnI CCSGG 2 cut(s) 485, 539
BcoDI GTCTC 2 cut(s) 2, 516
BfmI CTRYAG 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 3 cut(s) 165, 168, 425
BlsI GCNGC 3 cut(s) 166, 169, 426
Bme1390I CCNGG 2 cut(s) 485, 539
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 2 cut(s) 492, 616
BmrFI CCNGG 2 cut(s) 485, 539
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 381
BmuI ACTGGG 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 180, 212
Bpu10I CCTNAGC 1 cut(s) 34
BpuMI CCSGG 2 cut(s) 485, 539
BsaAI YACGTR 1 cut(s) 640
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 3 cut(s) 111, 279, 483
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 117, 160
Bse1I ACTGG 2 cut(s) 66, 164
Bse3DI GCAATG 1 cut(s) 523
BseDI CCNNGG 3 cut(s) 111, 279, 483
BseLI CCNNNNNNNGG 3 cut(s) 100, 117, 160
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 66, 164
BseRI GAGGAG 2 cut(s) 20, 296
BseXI GCAGC 3 cut(s) 151, 179, 436
BsgI GTGCAG 1 cut(s) 711
Bsh1236I CGCG 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 228
BsiEI CGRYCG 1 cut(s) 228
BsiSI CCGG 3 cut(s) 390, 485, 539
BslFI GGGAC 2 cut(s) 504, 536
BslI CCNNNNNNNGG 3 cut(s) 100, 117, 160
BsmAI GTCTC 2 cut(s) 2, 516
BsmBI CGTCTC 2 cut(s) 2, 516
BsmFI GGGAC 2 cut(s) 504, 536
Bsp143I GATC 2 cut(s) 142, 614
BspACI CCGC 2 cut(s) 488, 506
BspCNI CTCAG 1 cut(s) 47
BspFNI CGCG 1 cut(s) 13
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 492, 616
BspMAI CTGCAG 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 609, 622
BsrDI GCAATG 1 cut(s) 523
BsrI ACTGG 2 cut(s) 66, 164
BssECI CCNNGG 3 cut(s) 111, 279, 483
BssMI GATC 2 cut(s) 142, 614
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 100, 411
BstACI GRCGYC 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 461, 499
BstDEI CTNAG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 2 cut(s) 145, 617
BstMAI GTCTC 2 cut(s) 2, 516
BstMBI GATC 2 cut(s) 142, 614
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 2 cut(s) 411, 494
BstSCI CCNGG 2 cut(s) 483, 537
BstSFI CTRYAG 1 cut(s) 165
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 151, 179, 436
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 3 cut(s) 105, 324, 416
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 461, 499
CaiI CAGNNNCTG 1 cut(s) 415
CciI TCATGA 1 cut(s) 679
Cfr13I GGNCC 1 cut(s) 491
CseI GACGC 2 cut(s) 19, 284
Csp6I GTAC 4 cut(s) 121, 253, 641, 675
CviAII CATG 4 cut(s) 80, 244, 449, 680
CviJI RGCY 7 cut(s) 139, 164, 170, 183, 259, 459, 607
CviKI_1 RGCY 7 cut(s) 139, 164, 170, 183, 259, 459, 607
CviQI GTAC 4 cut(s) 121, 253, 641, 675
DdeI CTNAG 1 cut(s) 34
DpnI GATC 2 cut(s) 144, 616
DpnII GATC 2 cut(s) 142, 614
DraIII CACNNNGTG 2 cut(s) 100, 340
DrdI GACNNNNNNGTC 1 cut(s) 548
DseDI GACNNNNNNGTC 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 2 cut(s) 2, 516
FaeI CATG 4 cut(s) 83, 247, 452, 683
FaiI YATR 9 cut(s) 81, 240, 245, 270, 293, 379, 399, 450, 681
FaqI GGGAC 2 cut(s) 504, 536
FatI CATG 4 cut(s) 79, 243, 448, 679
FauI CCCGC 1 cut(s) 481
FblI GTMKAC 1 cut(s) 665
Fnu4HI GCNGC 3 cut(s) 165, 168, 425
Fsp4HI GCNGC 3 cut(s) 165, 168, 425
GluI GCNGC 3 cut(s) 165, 168, 425
HapII CCGG 3 cut(s) 390, 485, 539
HgaI GACGC 2 cut(s) 19, 284
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 4 cut(s) 83, 247, 452, 683
HinfI GANTC 3 cut(s) 107, 479, 530
HpaII CCGG 3 cut(s) 390, 485, 539
HphI GGTGA 2 cut(s) 22, 404
Hpy166II GTNNAC 1 cut(s) 666
Hpy188I TCNGA 2 cut(s) 307, 654
Hpy188III TCNNGA 3 cut(s) 433, 612, 680
Hpy8I GTNNAC 1 cut(s) 666
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 2 cut(s) 100, 411
HpyCH4IV ACGT 2 cut(s) 251, 639
HpyCH4V TGCA 3 cut(s) 167, 707, 728
HpyF10VI GCNNNNNNNGC 2 cut(s) 411, 494
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 2 cut(s) 251, 639
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 4 cut(s) 83, 247, 452, 683
Kzo9I GATC 2 cut(s) 142, 614
Lsp1109I GCAGC 3 cut(s) 151, 179, 436
LweI GCATC 1 cut(s) 381
MaeII ACGT 2 cut(s) 251, 639
MaeIII GTNAC 1 cut(s) 442
MalI GATC 2 cut(s) 144, 616
MboI GATC 2 cut(s) 142, 614
MboII GAAGA 1 cut(s) 596
MflI RGATCY 1 cut(s) 614
MluCI AATT 5 cut(s) 70, 148, 294, 556, 701
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 285, 585
MnlI CCTC 5 cut(s) 43, 140, 274, 361, 645
MseI TTAA 2 cut(s) 147, 362
MspI CCGG 3 cut(s) 390, 485, 539
MspR9I CCNGG 2 cut(s) 485, 539
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 411, 494
NciI CCSGG 2 cut(s) 485, 539
NdeII GATC 2 cut(s) 142, 614
NlaIII CATG 4 cut(s) 83, 247, 452, 683
NlaIV GGNNCC 2 cut(s) 492, 616
NmeAIII GCCGAG 1 cut(s) 304
PagI TCATGA 1 cut(s) 679
PfeI GAWTC 2 cut(s) 479, 530
PflMI CCANNNNNTGG 1 cut(s) 100
PfoI TCCNGGA 1 cut(s) 537
PkrI GCNGC 3 cut(s) 166, 169, 426
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 640
PspN4I GGNNCC 2 cut(s) 492, 616
PspPI GGNCC 1 cut(s) 491
PstI CTGCAG 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 1 cut(s) 614
RsaI GTAC 4 cut(s) 122, 254, 642, 676
RsaNI GTAC 4 cut(s) 121, 253, 641, 675
SaqAI TTAA 2 cut(s) 147, 362
SatI GCNGC 3 cut(s) 165, 168, 425
Sau3AI GATC 2 cut(s) 142, 614
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 485, 539
SetI ASST 9 cut(s) 24, 35, 43, 132, 185, 239, 254, 261, 642
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 491
Sse9I AATT 5 cut(s) 70, 148, 294, 556, 701
SsiI CCGC 2 cut(s) 488, 506
SspI AATATT 1 cut(s) 717
StyD4I CCNGG 2 cut(s) 483, 537
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 100, 411
TaiI ACGT 2 cut(s) 254, 642
TaqII GACCGA 1 cut(s) 214
TasI AATT 5 cut(s) 70, 148, 294, 556, 701
TatI WGTACW 1 cut(s) 674
TfiI GAWTC 2 cut(s) 479, 530
Tru1I TTAA 2 cut(s) 147, 362
Tru9I TTAA 2 cut(s) 147, 362
TscAI CASTG 3 cut(s) 105, 331, 416
TseI GCWGC 3 cut(s) 164, 167, 424
TspDTI ATGAA 3 cut(s) 68, 543, 612
TspGWI ACGGA 1 cut(s) 607
TspRI CASTG 3 cut(s) 105, 331, 416
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 1 cut(s) 701
XmiI GTMKAC 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.