MD11G1183800.v1.1

Blue copper protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0005440
Physical Location & Seq
Forward (+)
24056391 .. 24059366
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1183800.v1.1.491

Sequence Viewer

Length: 846 bp
ATGTATATACATATACAGTTGATGCCCTTTATTCTTCAATATCCCCTCTCTCTGTTTTCAGTTTTCACAAACTCCAACCAAAAAACAATGGAACCATTACTACGGAGCAAGTACACTAGCTTGTGTTTTCTCCTCCTCCTTCTTCTTCTTCTTCCTCTTGTTATTCCTTCGTTTTCAGGAATATCGGGTGTTGAAGCTTACAAGAATTATACAGTGGGTGACTCTTCCGGTTGGTATGAATCTGTGAACTATCAGAAATGGGTTGCCGCCAAGACATTCAGCTTGGGAGATTTTCTCATTTTTAATACGGACACCAACCACTCAGTTGTGCAAACATATAACTTGACGACATACAAGCTGTGCGATTACGACGATGCTCTAGAAAACGACACAATGCAATGGTCGGCAGCTGACCCGTCAAACACGGCAGTACGCGAGGTGTCAGTGGCAGTGCCTTTGGTAAAACAAGGGATGAACTATTTCTTTTCAGGGGATTATGATGGCGGCCAATGCAAGAACGGGCAGCACTTTAAGATCAGCGTCACTCACGGACAAGGGTTGCCAAAGAGTTTACAAAGCCCAACCACACCCACACAGGACCAGTCCCCAGGTCCAGCAACAGCAAGCAGTCCCGGCGGGTCCCCATCTCCAGGTGGTGACGGCAGTGATGATGGTTCTGTCCCGGATACACTTGTTCCTGCCAGTTTCGACCATCCCAAAGCGGATGACACTGCCACTGGCGATCATGATAAAGATTCATCTGGATCACTTTGTGTGAAGCACAATCACGGGATGCTATTTAGGGTTTTCATGTTGTTAGGGTTTCTCTACTGCTGCCTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

282

Amino Acids

30.75

Weight (kDa)

5.06

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 80 - 175 5.9e-16 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 435
AciI CCGC 4 cut(s) 267, 504, 636, 722
AclWI GGATC 1 cut(s) 772
AcoI YGGCCR 1 cut(s) 505
AdeI CACNNNGTG 1 cut(s) 773
AfaI GTAC 2 cut(s) 113, 432
AfiI CCNNNNNNNGG 1 cut(s) 650
AgsI TTSAA 2 cut(s) 38, 194
AjnI CCWGG 2 cut(s) 607, 649
AluBI AGCT 5 cut(s) 120, 197, 282, 358, 410
AluI AGCT 5 cut(s) 120, 197, 282, 358, 410
AlwI GGATC 1 cut(s) 772
AoxI GGCC 1 cut(s) 505
ApeKI GCWGC 3 cut(s) 407, 523, 834
Asp700I GAANNNNTTC 1 cut(s) 479
AspS9I GGNCC 3 cut(s) 598, 611, 639
AsuC2I CCSGG 2 cut(s) 633, 683
AsuHPI GGTGA 2 cut(s) 230, 668
AvaII GGWCC 3 cut(s) 598, 611, 639
BaeI ACNNNNGTAYC 2 cut(s) 678, 711
BbvI GCAGC 3 cut(s) 419, 535, 821
BccI CCATC 4 cut(s) 494, 652, 665, 720
BceAI ACGGC 2 cut(s) 441, 676
BciT130I CCWGG 2 cut(s) 609, 651
BciVI GTATCC 1 cut(s) 679
BcnI CCSGG 2 cut(s) 633, 683
BfaI CTAG 2 cut(s) 117, 380
BfuI GTATCC 1 cut(s) 679
BisI GCNGC 5 cut(s) 267, 408, 505, 524, 835
BlsI GCNGC 5 cut(s) 268, 409, 506, 525, 836
Bme1390I CCNGG 4 cut(s) 609, 633, 651, 683
Bme18I GGWCC 3 cut(s) 598, 611, 639
BmgT120I GGNCC 3 cut(s) 598, 611, 639
BmiI GGNNCC 3 cut(s) 93, 640, 641
BmrFI CCNGG 4 cut(s) 609, 633, 651, 683
BmsI GCATC 3 cut(s) 12, 364, 783
BplI GAGNNNNNCTC 2 cut(s) 279, 311
BpmI CTGGAG 1 cut(s) 633
BpuMI CCSGG 2 cut(s) 633, 683
BsaJI CCNNGG 1 cut(s) 607
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse1I ACTGG 3 cut(s) 601, 702, 742
Bse3DI GCAATG 1 cut(s) 404
BseBI CCWGG 2 cut(s) 609, 651
BseDI CCNNGG 1 cut(s) 607
BseGI GGATG 4 cut(s) 477, 712, 730, 798
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMI GCAATG 1 cut(s) 404
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 3 cut(s) 601, 702, 742
BseRI GAGGAG 2 cut(s) 122, 125
BseXI GCAGC 3 cut(s) 419, 535, 821
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 1 cut(s) 507
BsiSI CCGG 3 cut(s) 228, 633, 683
BslFI GGGAC 4 cut(s) 589, 615, 625, 665
BslI CCNNNNNNNGG 1 cut(s) 650
BsmFI GGGAC 4 cut(s) 589, 615, 625, 665
BsnI GGCC 1 cut(s) 507
Bsp143I GATC 3 cut(s) 534, 742, 764
BspACI CCGC 4 cut(s) 267, 504, 636, 722
BspANI GGCC 1 cut(s) 507
BspCNI CTCAG 1 cut(s) 335
BspFNI CGCG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 3 cut(s) 93, 640, 641
BspPI GGATC 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 404
BsrI ACTGG 3 cut(s) 601, 702, 742
BssECI CCNNGG 1 cut(s) 607
BssMI GATC 3 cut(s) 534, 742, 764
Bst2UI CCWGG 2 cut(s) 609, 651
Bst4CI ACNGT 2 cut(s) 18, 214
Bst6I CTCTTC 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 1 cut(s) 322
BstF5I GGATG 4 cut(s) 477, 712, 730, 798
BstFNI CGCG 1 cut(s) 435
BstKTI GATC 3 cut(s) 537, 745, 767
BstMBI GATC 3 cut(s) 534, 742, 764
BstMWI GCNNNNNNNGC 2 cut(s) 510, 633
BstNI CCWGG 2 cut(s) 609, 651
BstSCI CCNGG 4 cut(s) 607, 631, 649, 681
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 419, 535, 821
BsuI GTATCC 1 cut(s) 679
BsuRI GGCC 1 cut(s) 507
BtsCI GGATG 4 cut(s) 477, 712, 730, 798
BtsI GCAGTG 3 cut(s) 456, 670, 729
BtsIMutI CAGTG 6 cut(s) 219, 450, 456, 670, 729, 735
Cac8I GCNNGC 1 cut(s) 625
CciI TCATGA 1 cut(s) 745
Cfr13I GGNCC 3 cut(s) 598, 611, 639
CseI GACGC 1 cut(s) 529
Csp6I GTAC 2 cut(s) 112, 431
CviAII CATG 2 cut(s) 746, 811
CviJI RGCY 7 cut(s) 120, 197, 282, 358, 410, 507, 579
CviKI_1 RGCY 7 cut(s) 120, 197, 282, 358, 410, 507, 579
CviQI GTAC 2 cut(s) 112, 431
DdeI CTNAG 1 cut(s) 322
DpnI GATC 3 cut(s) 536, 744, 766
DpnII GATC 3 cut(s) 534, 742, 764
DraIII CACNNNGTG 1 cut(s) 773
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Eco47I GGWCC 3 cut(s) 598, 611, 639
EcoO109I RGGNCCY 1 cut(s) 639
EcoRII CCWGG 2 cut(s) 607, 649
FaeI CATG 2 cut(s) 749, 814
FaqI GGGAC 4 cut(s) 589, 615, 625, 665
FatI CATG 2 cut(s) 745, 810
FauI CCCGC 1 cut(s) 629
Fnu4HI GCNGC 5 cut(s) 267, 408, 505, 524, 835
FokI GGATG 4 cut(s) 484, 699, 737, 805
Fsp4HI GCNGC 5 cut(s) 267, 408, 505, 524, 835
FspBI CTAG 2 cut(s) 117, 380
GluI GCNGC 5 cut(s) 267, 408, 505, 524, 835
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 1 cut(s) 507
HapII CCGG 3 cut(s) 228, 633, 683
HgaI GACGC 1 cut(s) 529
Hin1II CATG 2 cut(s) 749, 814
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 3 cut(s) 221, 239, 755
HpaII CCGG 3 cut(s) 228, 633, 683
HphI GGTGA 2 cut(s) 230, 668
Hpy166II GTNNAC 3 cut(s) 114, 247, 572
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 4 cut(s) 177, 380, 746, 762
Hpy8I GTNNAC 3 cut(s) 114, 247, 572
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 2 cut(s) 149, 177
HpyCH4III ACNGT 2 cut(s) 18, 214
HpyCH4V TGCA 3 cut(s) 331, 397, 513
HpyF10VI GCNNNNNNNGC 2 cut(s) 510, 633
HpyF3I CTNAG 1 cut(s) 322
Hsp92II CATG 2 cut(s) 749, 814
KflI GGGWCCC 1 cut(s) 639
Kzo9I GATC 3 cut(s) 534, 742, 764
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 3 cut(s) 419, 535, 821
LweI GCATC 3 cut(s) 12, 364, 783
MaeI CTAG 2 cut(s) 117, 380
MaeIII GTNAC 3 cut(s) 218, 541, 656
MalI GATC 3 cut(s) 536, 744, 766
MboI GATC 3 cut(s) 534, 742, 764
MboII GAAGA 6 cut(s) 26, 134, 137, 140, 143, 216
MluCI AATT 1 cut(s) 205
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 5 cut(s) 56, 143, 146, 165, 430
MroXI GAANNNNTTC 1 cut(s) 479
MseI TTAA 2 cut(s) 303, 531
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 3 cut(s) 228, 633, 683
MspR9I CCNGG 4 cut(s) 609, 633, 651, 683
MvaI CCWGG 2 cut(s) 609, 651
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 2 cut(s) 510, 633
NciI CCSGG 2 cut(s) 633, 683
NdeII GATC 3 cut(s) 534, 742, 764
NlaIII CATG 2 cut(s) 749, 814
NlaIV GGNNCC 3 cut(s) 93, 640, 641
NmuCI GTSAC 3 cut(s) 218, 541, 656
PagI TCATGA 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 2 cut(s) 239, 755
PfoI TCCNGGA 1 cut(s) 681
PkrI GCNGC 5 cut(s) 268, 409, 506, 525, 836
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PpuMI RGGWCCY 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 639
Psp6I CCWGG 2 cut(s) 607, 649
PspGI CCWGG 2 cut(s) 607, 649
PspN4I GGNNCC 3 cut(s) 93, 640, 641
PspPI GGNCC 3 cut(s) 598, 611, 639
PspPPI RGGWCCY 1 cut(s) 639
PsrI GAACNNNNNNTAC 2 cut(s) 84, 116
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 2 cut(s) 113, 432
RsaNI GTAC 2 cut(s) 112, 431
SaqAI TTAA 2 cut(s) 303, 531
SatI GCNGC 5 cut(s) 267, 408, 505, 524, 835
Sau3AI GATC 3 cut(s) 534, 742, 764
Sau96I GGNCC 3 cut(s) 598, 611, 639
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 4 cut(s) 609, 633, 651, 683
SetI ASST 8 cut(s) 122, 199, 284, 360, 412, 441, 613, 655
SfaNI GCATC 3 cut(s) 12, 364, 783
SinI GGWCC 3 cut(s) 598, 611, 639
Sse9I AATT 1 cut(s) 205
SsiI CCGC 4 cut(s) 267, 504, 636, 722
SspMI CTAG 2 cut(s) 117, 380
StyD4I CCNGG 4 cut(s) 607, 631, 649, 681
TaaI ACNGT 2 cut(s) 18, 214
TaqI TCGA 1 cut(s) 708
TasI AATT 1 cut(s) 205
TatI WGTACW 1 cut(s) 111
TauI GCSGC 2 cut(s) 269, 507
TfiI GAWTC 2 cut(s) 239, 755
Tru1I TTAA 2 cut(s) 303, 531
Tru9I TTAA 2 cut(s) 303, 531
TscAI CASTG 6 cut(s) 219, 450, 456, 670, 736, 742
TseFI GTSAC 3 cut(s) 218, 541, 656
TseI GCWGC 3 cut(s) 407, 523, 834
Tsp45I GTSAC 3 cut(s) 218, 541, 656
TspDTI ATGAA 4 cut(s) 252, 488, 747, 799
TspGWI ACGGA 3 cut(s) 118, 323, 564
TspRI CASTG 6 cut(s) 219, 450, 456, 670, 736, 742
VpaK11BI GGWCC 3 cut(s) 598, 611, 639
XbaI TCTAGA 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 2 cut(s) 117, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.