Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Reverse (-)

2846894 .. 2848100

Gene Structure 1207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAGTACAGGCGCAGGAAGCGGAACAACCAAAGGTGGCAGAGGAAAGCCAAAGGCCACCAAATCCGTCTCTCGATCATCTAAAGCCGGTCTTCAATTCCCCGTCGGAAGAATCGCTAGATTCCTCAAATCCGGTAAATACGCCGAGCGTGTCGGTGCCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAGGTGTTGGAGCTGGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATAGTACCAAGACACATTCAGCTTGCAGTGAGGAACGATGAAGAGTTAAGCAAACTTCTGGGAAGTGTGACGATTGCGAATGGAGGAGTTTTGCCAAATATTCATCAGACTCTTTTGCCATCCAAGGTTGGCAAGAACAAAGGAGATATTGGATCTGCTTCTCAGGAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

142

Amino Acids

14.81

Weight (kDa)

10.32

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	17 - 96	1.4e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	99 - 132	1.7e-17	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	4 cut(s)	21, 180, 201, 221
AclWI	GGATC	1 cut(s)	415
AfaI	GTAC	3 cut(s)	7, 194, 261
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	3 cut(s)	164, 217, 277
AluI	AGCT	3 cut(s)	164, 217, 277
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	2 cut(s)	83, 254
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	2 cut(s)	201, 231
BlsI	GCNGC	2 cut(s)	202, 232
BmeT110I	CYCGRG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	157
BpiI	GAAGAC	2 cut(s)	83, 254
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	204, 378
BsaWI	WCCGGW	2 cut(s)	131, 166
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bse118I	RCCGGY	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	204, 378
BseGI	GGATG	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	4 cut(s)	87, 132, 159, 167
BsmAI	GTCTC	1 cut(s)	73
BsmBI	CGTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	74, 407
BspACI	CCGC	4 cut(s)	21, 180, 201, 221
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	415
BspT107I	GGYRCC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	204, 378
BssMI	GATC	2 cut(s)	74, 407
BssT1I	CCWWGG	1 cut(s)	378
Bst6I	CTCTTC	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	219, 279
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	2 cut(s)	77, 410
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	2 cut(s)	74, 407
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 227
BstV1I	GCAGC	1 cut(s)	242
BstV2I	GAAGAC	2 cut(s)	83, 254
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	374
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	219, 279
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	1 cut(s)	86
Csp6I	GTAC	3 cut(s)	6, 193, 260
CviJI	RGCY	6 cut(s)	49, 56, 86, 164, 217, 277
CviKI_1	RGCY	6 cut(s)	49, 56, 86, 164, 217, 277
CviQI	GTAC	3 cut(s)	6, 193, 260
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	76, 409
DpnII	GATC	2 cut(s)	74, 407
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	73
FaiI	YATR	1 cut(s)	257
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	201, 231
FokI	GGATG	1 cut(s)	361
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	201, 231
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	201, 231
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	4 cut(s)	87, 132, 159, 167
HhaI	GCGC	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	111, 120, 364
HpaII	CCGG	4 cut(s)	87, 132, 159, 167
Hpy188I	TCNGA	3 cut(s)	107, 363, 428
Hpy188III	TCNNGA	3 cut(s)	72, 188, 419
Hpy99I	CGWCG	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 227
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	253
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	74, 407
LmnI	GCTCC	3 cut(s)	161, 169, 214
LpnPI	CCDG	7 cut(s)	100, 145, 172, 180, 203, 299, 404
Lsp1109I	GCAGC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	76, 409
MboI	GATC	2 cut(s)	74, 407
MboII	GAAGA	4 cut(s)	83, 120, 259, 308
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	2 cut(s)	85, 192
MnlI	CCTC	6 cut(s)	35, 134, 199, 206, 279, 332
MseI	TTAA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	4 cut(s)	87, 132, 159, 167
MwoI	GCNNNNNNNGC	2 cut(s)	18, 227
NdeII	GATC	2 cut(s)	74, 407
NlaIV	GGNNCC	1 cut(s)	157
NmeAIII	GCCGAG	2 cut(s)	169, 229
NmuCI	GTSAC	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	111, 120
PkrI	GCNGC	2 cut(s)	202, 232
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	3 cut(s)	7, 194, 261
RsaNI	GTAC	3 cut(s)	6, 193, 260
SacI	GAGCTC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	201, 231
Sau3AI	GATC	2 cut(s)	74, 407
SchI	GAGTC	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	8 cut(s)	37, 166, 198, 210, 219, 256, 279, 384
Sfr274I	CTCGAG	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	4 cut(s)	21, 180, 201, 221
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	73, 189
TasI	AATT	1 cut(s)	95
TatI	WGTACW	1 cut(s)	5
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	111, 120
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	309, 347
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	288
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.