pycom03g21800

histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0002003
Physical Location & Seq
Forward (+)
22036000 .. 22036524
525 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21800.2

Sequence Viewer

Length: 426 bp
ATGAGCTCCACCGCTGAAACCACCACCAAAGCCGGCCGGGGCAAGCCCCGCACCACCAAGTCGGTCTCAAGATCCCAGAAGGCCGGCCTCCAATTCCCAGTCGGCCGAGTCGCCCGGTTCCTGAAGACCGGCCGCTACGCTCAGCGAGTCGGCGGCGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAGTACCTCGCTGCTGAGATTTTGGAGTTGGCCGGGAATGCGGCTAGGGACAACAAGAAGAACAGGATTACTCCTCGGCACATCCAGCTTGCGGTGCGAAACGACGAGGAGTTTACGAAGCTTTTGGGGTCTGTGACGATCGCCAACGGCGGCGTTTTGCCCAACATTCATCAGAATCTGCTTCCGAGCAAGGCTGGCAAGGGGAAGGGCGTGATTGGGTCTGCCTCCCAGGAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko05034 ko05322 map04217 map05034 map05322
Pfam Domains
Protein Families
Histone Histone_H2A_C

Protein Analysis

142

Amino Acids

15.0

Weight (kDa)

10.67

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AciI CCGC 9 cut(s) 12, 49, 133, 153, 156, 177, 227, 278, 336
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 4 cut(s) 34, 103, 130, 216
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 277
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 3 cut(s) 6, 274, 307
AluI AGCT 3 cut(s) 6, 274, 307
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 66
AlwNI CAGNNNCTG 1 cut(s) 364
AoxI GGCC 6 cut(s) 34, 81, 85, 103, 130, 216
ApeKI GCWGC 1 cut(s) 197
AsuC2I CCSGG 4 cut(s) 38, 115, 164, 220
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 184
BceAI ACGGC 2 cut(s) 164, 349
BciT130I CCWGG 1 cut(s) 416
BcnI CCSGG 4 cut(s) 38, 115, 164, 220
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 231
BisI GCNGC 6 cut(s) 133, 154, 157, 198, 228, 337
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 6 cut(s) 134, 155, 158, 199, 229, 338
Bme1390I CCNGG 5 cut(s) 38, 115, 164, 220, 416
BmiI GGNNCC 2 cut(s) 119, 160
BmrFI CCNGG 5 cut(s) 38, 115, 164, 220, 416
BmrI ACTGGG 1 cut(s) 92
BmuI ACTGGG 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 52, 206
BpuMI CCSGG 4 cut(s) 38, 115, 164, 220
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 4 cut(s) 37, 162, 260, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse118I RCCGGY 3 cut(s) 32, 83, 128
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 4 cut(s) 37, 162, 260, 414
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 155, 192
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 2 cut(s) 249, 308
BseX3I CGGCCG 3 cut(s) 34, 103, 130
BseXI GCAGC 1 cut(s) 184
Bsh1285I CGRYCG 4 cut(s) 37, 106, 133, 327
BshFI GGCC 6 cut(s) 36, 83, 87, 105, 132, 218
BsiEI CGRYCG 4 cut(s) 37, 106, 133, 327
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 7 cut(s) 33, 37, 84, 115, 129, 164, 219
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 6 cut(s) 36, 83, 87, 105, 132, 218
Bso31I GGTCTC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 71, 324
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 9 cut(s) 12, 49, 133, 153, 156, 177, 227, 278, 336
BspANI GGCC 6 cut(s) 36, 83, 87, 105, 132, 218
BspCNI CTCAG 2 cut(s) 154, 193
BspLI GGNNCC 2 cut(s) 119, 160
BspPI GGATC 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 70
BsrFI RCCGGY 3 cut(s) 32, 83, 128
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 3 cut(s) 32, 83, 128
BssECI CCNNGG 4 cut(s) 37, 162, 260, 414
BssMI GATC 2 cut(s) 71, 324
Bst2UI CCWGG 1 cut(s) 416
BstC8I GCNNGC 5 cut(s) 34, 44, 85, 276, 382
BstDEI CTNAG 2 cut(s) 141, 201
BstF5I GGATG 1 cut(s) 267
BstKTI GATC 2 cut(s) 74, 327
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 71, 324
BstMCI CGRYCG 4 cut(s) 37, 106, 133, 327
BstMWI GCNNNNNNNGC 5 cut(s) 48, 224, 271, 280, 381
BstNI CCWGG 1 cut(s) 416
BstSCI CCNGG 5 cut(s) 36, 113, 162, 218, 414
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BstZI CGGCCG 3 cut(s) 34, 103, 130
BsuRI GGCC 6 cut(s) 36, 83, 87, 105, 132, 218
BtsCI GGATG 1 cut(s) 267
Cac8I GCNNGC 5 cut(s) 34, 44, 85, 276, 382
CaiI CAGNNNCTG 1 cut(s) 364
Cfr10I RCCGGY 3 cut(s) 32, 83, 128
Csp6I GTAC 1 cut(s) 190
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 2 cut(s) 141, 201
DpnI GATC 2 cut(s) 73, 326
DpnII GATC 2 cut(s) 71, 324
EaeI YGGCCR 4 cut(s) 34, 103, 130, 216
EagI CGGCCG 3 cut(s) 34, 103, 130
EciI GGCGGA 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 6
EclXI CGGCCG 3 cut(s) 34, 103, 130
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 70
Eco52I CGGCCG 3 cut(s) 34, 103, 130
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 8
FaqI GGGAC 1 cut(s) 248
FauI CCCGC 1 cut(s) 56
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 6 cut(s) 133, 154, 157, 198, 228, 337
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 8
FseI GGCCGGCC 1 cut(s) 87
Fsp4HI GCNGC 6 cut(s) 133, 154, 157, 198, 228, 337
FspBI CTAG 1 cut(s) 231
GluI GCNGC 6 cut(s) 133, 154, 157, 198, 228, 337
HaeIII GGCC 6 cut(s) 36, 83, 87, 105, 132, 218
HapII CCGG 7 cut(s) 33, 37, 84, 115, 129, 164, 219
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 3 cut(s) 108, 147, 361
HpaII CCGG 7 cut(s) 33, 37, 84, 115, 129, 164, 219
Hpy166II GTNNAC 2 cut(s) 169, 300
Hpy188I TCNGA 2 cut(s) 360, 372
Hpy188III TCNNGA 2 cut(s) 69, 121
Hpy8I GTNNAC 2 cut(s) 169, 300
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 73, 385
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 224, 271, 280, 381
HpyF3I CTNAG 2 cut(s) 141, 201
KroI GCCGGC 2 cut(s) 32, 83
KroNI GCCGGC 2 cut(s) 34, 85
Kzo9I GATC 2 cut(s) 71, 324
LmnI GCTCC 2 cut(s) 11, 164
Lsp1109I GCAGC 1 cut(s) 184
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 73, 326
MboI GATC 2 cut(s) 71, 324
MboII GAAGA 2 cut(s) 136, 256
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 92
MlyI GAGTC 2 cut(s) 117, 156
MnlI CCTC 6 cut(s) 98, 182, 203, 270, 286, 421
MroNI GCCGGC 2 cut(s) 32, 83
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 7 cut(s) 33, 37, 84, 115, 129, 164, 219
MspR9I CCNGG 5 cut(s) 38, 115, 164, 220, 416
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 5 cut(s) 48, 224, 271, 280, 381
NaeI GCCGGC 2 cut(s) 34, 85
NciI CCSGG 4 cut(s) 38, 115, 164, 220
NdeII GATC 2 cut(s) 71, 324
NgoMIV GCCGGC 2 cut(s) 32, 83
NlaIV GGNNCC 2 cut(s) 119, 160
NmeAIII GCCGAG 2 cut(s) 131, 241
NmuCI GTSAC 1 cut(s) 319
PctI GAATGC 1 cut(s) 229
PdiI GCCGGC 2 cut(s) 34, 85
PfeI GAWTC 1 cut(s) 361
PkrI GCNGC 6 cut(s) 134, 155, 158, 199, 229, 338
Ple19I CGATCG 1 cut(s) 327
PleI GAGTC 2 cut(s) 116, 155
PpsI GAGTC 2 cut(s) 116, 155
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 2 cut(s) 119, 160
PstNI CAGNNNCTG 1 cut(s) 364
PsuI RGATCY 1 cut(s) 71
PvuI CGATCG 1 cut(s) 327
RigI GGCCGGCC 1 cut(s) 87
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 6 cut(s) 133, 154, 157, 198, 228, 337
Sau3AI GATC 2 cut(s) 71, 324
SchI GAGTC 2 cut(s) 117, 156
ScrFI CCNGG 5 cut(s) 38, 115, 164, 220, 416
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 8, 174, 195, 276, 309
SmlI CTYRAG 2 cut(s) 67, 185
SmoI CTYRAG 2 cut(s) 67, 185
Sse9I AATT 1 cut(s) 92
SsiI CCGC 9 cut(s) 12, 49, 133, 153, 156, 177, 227, 278, 336
SspMI CTAG 1 cut(s) 231
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 5 cut(s) 36, 113, 162, 218, 414
TaqII GACCGA 1 cut(s) 52
TasI AATT 1 cut(s) 92
TauI GCSGC 5 cut(s) 135, 156, 159, 230, 339
TfiI GAWTC 1 cut(s) 361
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.