Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8413311.1

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Reverse (-)

200 .. 723

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8413311.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgagttctccgacttccaagggcggccgaggcaagcccaaggccaccaaatcggtctccaggtcctccaaggccggcctccaattccccgtcggccgtatcgctcggttcctcaaatccggcaagtacgccgagcgagtcggcgccggcgctcccgtctacctctccgccgtcctcgagtatctcgccgctgaggtgcttgagctcgctggcaatgccgctagagataacaagaagaatcggatcgttccgaggcacattcagctggcggtgcgtaatgacgaggagttgagcaagcttttggggactgtgactattgctaatggaggtgtcttgcctaacattcatcagaatctgctgccgaagaagactgggaaaggcaagggagacattggatcggcgtcgcaagagttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

138

Amino Acids

14.58

Weight (kDa)

10.36

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	5 cut(s)	24, 168, 189, 219, 269
AclWI	GGATC	2 cut(s)	251, 403
AcoI	YGGCCR	2 cut(s)	25, 94
AcyI	GRCGYC	2 cut(s)	144, 401
AfaI	GTAC	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	3 cut(s)	205, 265, 298
AluI	AGCT	3 cut(s)	205, 265, 298
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	61, 381
AlwI	GGATC	2 cut(s)	251, 403
AlwNI	CAGNNNCTG	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	5 cut(s)	25, 42, 72, 76, 94
ApeKI	GCWGC	1 cut(s)	358
AspLEI	GCGC	2 cut(s)	146, 152
AspS9I	GGNCC	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	345
BceAI	ACGGC	2 cut(s)	81, 155
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	61, 381
BfaI	CTAG	1 cut(s)	222
BfoI	RGCGCY	2 cut(s)	147, 153
BisI	GCNGC	4 cut(s)	25, 189, 219, 359
BlsI	GCNGC	4 cut(s)	26, 190, 220, 360
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	110, 145
BmrFI	CCNGG	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	43
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	221
BsaHI	GRCGYC	2 cut(s)	144, 401
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	5 cut(s)	18, 28, 39, 69, 251
Bse118I	RCCGGY	2 cut(s)	74, 146
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	5 cut(s)	18, 28, 39, 69, 251
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	299
BseX3I	CGGCCG	2 cut(s)	25, 94
BseXI	GCAGC	1 cut(s)	345
Bsh1285I	CGRYCG	2 cut(s)	28, 97
BshFI	GGCC	5 cut(s)	27, 44, 74, 78, 96
BshNI	GGYRCC	1 cut(s)	143
BsiEI	CGRYCG	2 cut(s)	28, 97
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	75, 120, 147
BslFI	GGGAC	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	61, 381
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	5 cut(s)	27, 44, 74, 78, 96
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	243, 395
BspACI	CCGC	5 cut(s)	24, 168, 189, 219, 269
BspANI	GGCC	5 cut(s)	27, 44, 74, 78, 96
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	110, 145
BspPI	GGATC	2 cut(s)	251, 403
BspT107I	GGYRCC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	220
BsrFI	RCCGGY	2 cut(s)	74, 146
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	2 cut(s)	74, 146
BssECI	CCNNGG	5 cut(s)	18, 28, 39, 69, 251
BssMI	GATC	2 cut(s)	243, 395
BssNI	GRCGYC	2 cut(s)	144, 401
BssT1I	CCWWGG	3 cut(s)	18, 39, 69
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	310
BstACI	GRCGYC	2 cut(s)	144, 401
BstC8I	GCNNGC	7 cut(s)	35, 76, 148, 207, 211, 267, 296
BstDEI	CTNAG	1 cut(s)	192
BstH2I	RGCGCY	2 cut(s)	147, 153
BstHHI	GCGC	2 cut(s)	146, 152
BstKTI	GATC	2 cut(s)	246, 398
BstMAI	GTCTC	2 cut(s)	61, 381
BstMBI	GATC	2 cut(s)	243, 395
BstMCI	CGRYCG	2 cut(s)	28, 97
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 215, 262, 271
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	374
BstZI	CGGCCG	2 cut(s)	25, 94
BsuRI	GGCC	5 cut(s)	27, 44, 74, 78, 96
Cac8I	GCNNGC	7 cut(s)	35, 76, 148, 207, 211, 267, 296
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	2 cut(s)	146, 152
Cfr10I	RCCGGY	2 cut(s)	74, 146
Cfr13I	GGNCC	1 cut(s)	63
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	127
CviJI	RGCY	9 cut(s)	27, 37, 44, 74, 78, 96, 205, 265, 298
CviKI_1	RGCY	9 cut(s)	27, 37, 44, 74, 78, 96, 205, 265, 298
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	192
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	2 cut(s)	245, 397
DpnII	GATC	2 cut(s)	243, 395
EaeI	YGGCCR	2 cut(s)	25, 94
EagI	CGGCCG	2 cut(s)	25, 94
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	205
EclXI	CGGCCG	2 cut(s)	25, 94
Eco130I	CCWWGG	3 cut(s)	18, 39, 69
Eco24I	GRGCYC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	63
Eco52I	CGGCCG	2 cut(s)	25, 94
Eco53kI	GAGCTC	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	3 cut(s)	18, 39, 69
EcoT38I	GRGCYC	1 cut(s)	207
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	3 cut(s)	18, 39, 69
FaqI	GGGAC	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	25, 189, 219, 359
FriOI	GRGCYC	1 cut(s)	207
FseI	GGCCGGCC	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	25, 189, 219, 359
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	2 cut(s)	145, 151
GluI	GCNGC	4 cut(s)	25, 189, 219, 359
GsuI	CTGGAG	1 cut(s)	43
HaeII	RGCGCY	2 cut(s)	147, 153
HaeIII	GGCC	5 cut(s)	27, 44, 74, 78, 96
HapII	CCGG	3 cut(s)	75, 120, 147
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	2 cut(s)	146, 152
Hin1I	GRCGYC	2 cut(s)	144, 401
Hin6I	GCGC	2 cut(s)	144, 150
HinP1I	GCGC	2 cut(s)	144, 150
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	3 cut(s)	138, 238, 352
HpaII	CCGG	3 cut(s)	75, 120, 147
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	12, 243, 252, 351
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	2 cut(s)	95, 406
HpyCH4III	ACNGT	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 215, 262, 271
HpyF3I	CTNAG	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	144, 401
HspAI	GCGC	2 cut(s)	144, 150
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	2 cut(s)	74, 146
KroNI	GCCGGC	2 cut(s)	76, 148
Kzo9I	GATC	2 cut(s)	243, 395
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	8 cut(s)	46, 73, 88, 133, 160, 195, 251, 357
Lsp1109I	GCAGC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	2 cut(s)	245, 397
MboI	GATC	2 cut(s)	243, 395
MboII	GAAGA	3 cut(s)	247, 376, 379
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	1 cut(s)	83
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	35
MreI	CGCCGGCG	1 cut(s)	146
MroNI	GCCGGC	2 cut(s)	74, 146
MspA1I	CMGCKG	2 cut(s)	191, 265
MspI	CCGG	3 cut(s)	75, 120, 147
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	4 cut(s)	30, 215, 262, 271
NaeI	GCCGGC	2 cut(s)	76, 148
NarI	GGCGCC	1 cut(s)	144
NdeII	GATC	2 cut(s)	243, 395
NgoMIV	GCCGGC	2 cut(s)	74, 146
NlaIV	GGNNCC	2 cut(s)	110, 145
NmeAIII	GCCGAG	2 cut(s)	53, 157
NmuCI	GTSAC	1 cut(s)	310
PaeR7I	CTCGAG	1 cut(s)	176
PdiI	GCCGGC	2 cut(s)	76, 148
PfeI	GAWTC	2 cut(s)	238, 352
PkrI	GCNGC	4 cut(s)	26, 190, 220, 360
PleI	GAGTC	1 cut(s)	146
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	110, 145
PspPI	GGNCC	1 cut(s)	63
PspPPI	RGGWCCY	1 cut(s)	63
PspXI	VCTCGAGB	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	265
RigI	GGCCGGCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	207
SatI	GCNGC	4 cut(s)	25, 189, 219, 359
Sau3AI	GATC	2 cut(s)	243, 395
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	7 cut(s)	65, 165, 198, 207, 267, 300, 331
SfoI	GGCGCC	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	176
SgrAI	CRCCGGYG	1 cut(s)	146
SinI	GGWCC	1 cut(s)	63
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	2 cut(s)	176, 200
SmoI	CTYRAG	2 cut(s)	176, 200
Sse9I	AATT	1 cut(s)	83
SsiI	CCGC	5 cut(s)	24, 168, 189, 219, 269
SspDI	GGCGCC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	3 cut(s)	18, 39, 69
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	177
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	83
TauI	GCSGC	3 cut(s)	27, 191, 221
TfiI	GAWTC	2 cut(s)	238, 352
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	63
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.