Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Forward (+)

28972494 .. 28973781

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G332900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGTTCTAAAGAAGCTGGTTCGACGAAGGGAGGCAGGGGCAAACCGAAGGCCTCCAAGTCTGTATCGAGGTCTCATAAAGCGGGGCTCCAGTTTCCGGTGGGTAGGATCGCCCGATTTCTTAAGGCTGGCAAGTACGCCGAGCGGGTTGGTGCTGGCGCACCTGTATATCTCTCCGCCGTGCTCGAATACCTTGCTGCAGAGGTATTGGAGCTTGCTGGAAATGCTGCAAGGGATAACAAGAAGAACCGTATTGTGCCAAGGCACATCCAACTGGCCGTGAGGAACGACGAAGAGCTAAGCAAGCTATTGGGGTCTGTGACCATTGCTAATGGAGGAGTGTTGCCAAACATCCACCAAACTCTTTTGCCGAAGAAGGTGGGCAAAGGCAAGGGCGATATTGGATCTGCGTCTCAGGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

142

Amino Acids

14.86

Weight (kDa)

10.28

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	145
AciI	CCGC	3 cut(s)	83, 145, 177
AclWI	GGATC	2 cut(s)	116, 412
AcoI	YGGCCR	1 cut(s)	276
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflII	CTTAAG	1 cut(s)	122
AluBI	AGCT	4 cut(s)	17, 214, 298, 307
AluI	AGCT	4 cut(s)	17, 214, 298, 307
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	2 cut(s)	78, 417
AlwI	GGATC	2 cut(s)	116, 412
AoxI	GGCC	2 cut(s)	51, 276
ApeKI	GCWGC	2 cut(s)	197, 227
AspLEI	GCGC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	184, 214
BceAI	ACGGC	2 cut(s)	164, 263
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BcoDI	GTCTC	2 cut(s)	78, 417
BfaI	CTAG	1 cut(s)	424
BfmI	CTRYAG	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	122
BisI	GCNGC	2 cut(s)	198, 228
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	2 cut(s)	199, 229
BmiI	GGNNCC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	74
Bpu1102I	GCTNAGC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	91, 279
Bse3DI	GCAATG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	2 cut(s)	267, 351
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	324
BseNI	ACTGG	2 cut(s)	91, 279
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	184, 214
BshFI	GGCC	2 cut(s)	53, 278
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	78, 417
BsmBI	CGTCTC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	53, 278
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	90, 186
Bsp143I	GATC	2 cut(s)	108, 404
Bsp1720I	GCTNAGC	1 cut(s)	299
BspACI	CCGC	3 cut(s)	83, 145, 177
BspANI	GGCC	2 cut(s)	53, 278
BspLI	GGNNCC	1 cut(s)	89
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	2 cut(s)	116, 412
BspQI	GCTCTTC	1 cut(s)	288
BspTI	CTTAAG	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	91, 279
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	108, 404
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	4 cut(s)	130, 157, 216, 305
BstDEI	CTNAG	2 cut(s)	299, 414
BstF5I	GGATG	2 cut(s)	267, 351
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	111, 407
BstMAI	GTCTC	2 cut(s)	78, 417
BstMBI	GATC	2 cut(s)	108, 404
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 304
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	184, 214
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	53, 278
BtsCI	GGATG	2 cut(s)	267, 351
Cac8I	GCNNGC	4 cut(s)	130, 157, 216, 305
CfoI	GCGC	1 cut(s)	161
CseI	GACGC	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	136
CviJI	RGCY	8 cut(s)	17, 53, 88, 128, 214, 278, 298, 307
CviKI_1	RGCY	8 cut(s)	17, 53, 88, 128, 214, 278, 298, 307
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	299, 414
DpnI	GATC	2 cut(s)	110, 406
DpnII	GATC	2 cut(s)	108, 404
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	260
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	417
FaiI	YATR	2 cut(s)	78, 169
FauI	CCCGC	2 cut(s)	76, 138
Fnu4HI	GCNGC	2 cut(s)	198, 228
FokI	GGATG	2 cut(s)	254, 338
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	198, 228
FspBI	CTAG	1 cut(s)	424
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	2 cut(s)	198, 228
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	53, 278
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	399
HhaI	GCGC	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HpaII	CCGG	1 cut(s)	98
Hpy188III	TCNNGA	1 cut(s)	416
Hpy99I	CGWCG	2 cut(s)	28, 293
HpyAV	CCTTC	3 cut(s)	22, 43, 370
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	200, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 304
HpyF3I	CTNAG	2 cut(s)	299, 414
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	108, 404
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	2 cut(s)	93, 211
Lsp1109I	GCAGC	2 cut(s)	184, 214
MaeI	CTAG	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	2 cut(s)	110, 406
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	2 cut(s)	108, 404
MboII	GAAGA	3 cut(s)	256, 305, 385
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	2 cut(s)	90, 186
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	6 cut(s)	26, 63, 64, 196, 276, 329
MseI	TTAA	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	224, 304
NdeII	GATC	2 cut(s)	108, 404
NlaIV	GGNNCC	1 cut(s)	89
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	199, 229
PspN4I	GGNNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	404
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	198, 228
Sau3AI	GATC	2 cut(s)	108, 404
SduI	GDGCHC	2 cut(s)	90, 186
SetI	ASST	9 cut(s)	19, 74, 166, 195, 207, 216, 300, 309, 381
SfcI	CTRYAG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	3 cut(s)	83, 145, 177
SspMI	CTAG	1 cut(s)	424
StuI	AGGCCT	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	3 cut(s)	23, 68, 186
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	197, 227
Tsp45I	GTSAC	1 cut(s)	319
Vha464I	CTTAAG	1 cut(s)	122
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.