Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Forward (+)

41401062 .. 41402295

Gene Structure 1234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1296200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGTTCTCCGACCTCCAAAGGCGGCAGAGGCAAGCCCAAGGCCTCCAAATCCGTCTCCCGATCTTCCAAGGCCGGCCTCCAGTTTCCCGTCGGTCGTATCGCGCGGTTCCTCAAGGCCGGCAAGTACGCCGAGCGTGTCGGCGCTGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTATCTCGCTGCTGAGGTGCTTGAGCTTGCTGGAAATGCAGCCAGAGACAACAAGAAGAACCGAATTGTCCCGAGGCACATTCAGCTGGCTGTGCGGAACGACGAGGAGCTGAGCAAGCTTTTGGGGGCTGTCACGATCGCAAACGGCGGTGTTATGCCCAACATCCATCAGAATCTGCTGCCGAAGAAGGTTGGCAAAGGGAAAGGCGAAATTGGATCCGCCTCACAAGAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

139

Amino Acids

14.55

Weight (kDa)

10.36

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	13 - 92	1.8e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	95 - 128	2.9e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	2 cut(s)	104, 106
AciI	CCGC	6 cut(s)	24, 106, 168, 274, 327, 399
AclWI	GGATC	2 cut(s)	390, 403
AcsI	RAATTY	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	128
AluBI	AGCT	4 cut(s)	205, 265, 289, 298
AluI	AGCT	4 cut(s)	205, 265, 289, 298
Alw26I	GTCTC	2 cut(s)	61, 219
AlwI	GGATC	2 cut(s)	390, 403
AlwNI	CAGNNNCTG	1 cut(s)	355
Ama87I	CYCGRG	2 cut(s)	176, 250
AoxI	GGCC	4 cut(s)	42, 72, 76, 117
ApeKI	GCWGC	3 cut(s)	188, 218, 358
ApoI	RAATTY	1 cut(s)	410
AspLEI	GCGC	3 cut(s)	106, 146, 152
AvaI	CYCGRG	2 cut(s)	176, 250
BamHI	GGATCC	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	149
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	175, 230, 345
BccI	CCATC	1 cut(s)	354
BceAI	ACGGC	2 cut(s)	155, 340
BcoDI	GTCTC	2 cut(s)	61, 219
BfoI	RGCGCY	2 cut(s)	147, 153
BisI	GCNGC	4 cut(s)	25, 189, 219, 359
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	4 cut(s)	26, 190, 220, 360
BmeT110I	CYCGRG	2 cut(s)	176, 250
BmiI	GGNNCC	3 cut(s)	110, 151, 397
BpmI	CTGGAG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	290
BpuEI	CTTGAG	2 cut(s)	98, 221
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	39, 69, 251
Bse118I	RCCGGY	2 cut(s)	74, 119
Bse1I	ACTGG	1 cut(s)	82
BseDI	CCNNGG	3 cut(s)	39, 69, 251
BseGI	GGATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	183, 281
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	3 cut(s)	175, 230, 345
Bsh1236I	CGCG	2 cut(s)	104, 106
Bsh1285I	CGRYCG	2 cut(s)	97, 318
BshFI	GGCC	4 cut(s)	44, 74, 78, 119
BshNI	GGYRCC	1 cut(s)	149
BsiEI	CGRYCG	2 cut(s)	97, 318
BsiHKCI	CYCGRG	2 cut(s)	176, 250
BsiSI	CCGG	2 cut(s)	75, 120
BslFI	GGGAC	1 cut(s)	233
BsmAI	GTCTC	2 cut(s)	61, 219
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	4 cut(s)	44, 74, 78, 119
BsoBI	CYCGRG	2 cut(s)	176, 250
Bsp143I	GATC	3 cut(s)	62, 315, 395
Bsp1720I	GCTNAGC	1 cut(s)	290
BspACI	CCGC	6 cut(s)	24, 106, 168, 274, 327, 399
BspANI	GGCC	4 cut(s)	44, 74, 78, 119
BspCNI	CTCAG	2 cut(s)	184, 282
BspFNI	CGCG	2 cut(s)	104, 106
BspLI	GGNNCC	3 cut(s)	110, 151, 397
BspPI	GGATC	2 cut(s)	390, 403
BspT107I	GGYRCC	1 cut(s)	149
BsrFI	RCCGGY	2 cut(s)	74, 119
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	2 cut(s)	74, 119
BssECI	CCNNGG	3 cut(s)	39, 69, 251
BssMI	GATC	3 cut(s)	62, 315, 395
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	2 cut(s)	39, 69
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	7 cut(s)	35, 76, 121, 148, 207, 267, 296
BstDEI	CTNAG	2 cut(s)	192, 290
BstF5I	GGATG	1 cut(s)	342
BstFNI	CGCG	2 cut(s)	104, 106
BstH2I	RGCGCY	2 cut(s)	147, 153
BstHHI	GCGC	3 cut(s)	106, 146, 152
BstKTI	GATC	3 cut(s)	65, 318, 398
BstMAI	GTCTC	2 cut(s)	61, 219
BstMBI	GATC	3 cut(s)	62, 315, 395
BstMCI	CGRYCG	2 cut(s)	97, 318
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 215, 262, 271, 295
BstUI	CGCG	2 cut(s)	104, 106
BstV1I	GCAGC	3 cut(s)	175, 230, 345
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	4 cut(s)	44, 74, 78, 119
BtsCI	GGATG	1 cut(s)	342
Cac8I	GCNNGC	7 cut(s)	35, 76, 121, 148, 207, 267, 296
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	3 cut(s)	106, 146, 152
Cfr10I	RCCGGY	2 cut(s)	74, 119
Csp6I	GTAC	1 cut(s)	127
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	192, 290
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	3 cut(s)	64, 317, 397
DpnII	GATC	3 cut(s)	62, 315, 395
EciI	GGCGGA	2 cut(s)	157, 388
Eco130I	CCWWGG	2 cut(s)	39, 69
Eco147I	AGGCCT	1 cut(s)	44
Eco88I	CYCGRG	2 cut(s)	176, 250
EcoT14I	CCWWGG	2 cut(s)	39, 69
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	39, 69
Esp3I	CGTCTC	1 cut(s)	61
FaiI	YATR	1 cut(s)	335
FaqI	GGGAC	1 cut(s)	233
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	25, 189, 219, 359
FokI	GGATG	1 cut(s)	329
FseI	GGCCGGCC	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	25, 189, 219, 359
GlaI	GCGC	3 cut(s)	105, 145, 151
GluI	GCNGC	4 cut(s)	25, 189, 219, 359
GsuI	CTGGAG	1 cut(s)	65
HaeII	RGCGCY	2 cut(s)	147, 153
HaeIII	GGCC	4 cut(s)	44, 74, 78, 119
HapII	CCGG	2 cut(s)	75, 120
HhaI	GCGC	3 cut(s)	106, 146, 152
Hin1I	GRCGYC	1 cut(s)	150
Hin6I	GCGC	3 cut(s)	104, 144, 150
HinP1I	GCGC	3 cut(s)	104, 144, 150
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	2 cut(s)	75, 120
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	12, 351
Hpy188III	TCNNGA	3 cut(s)	60, 250, 313
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	2 cut(s)	95, 284
HpyAV	CCTTC	1 cut(s)	361
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 215, 262, 271, 295
HpyF3I	CTNAG	2 cut(s)	192, 290
Hsp92I	GRCGYC	1 cut(s)	150
HspAI	GCGC	3 cut(s)	104, 144, 150
KasI	GGCGCC	1 cut(s)	149
KroI	GCCGGC	2 cut(s)	74, 119
KroNI	GCCGGC	2 cut(s)	76, 121
Kzo9I	GATC	3 cut(s)	62, 315, 395
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	7 cut(s)	88, 95, 132, 133, 195, 235, 251
Lsp1109I	GCAGC	3 cut(s)	175, 230, 345
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	3 cut(s)	64, 317, 397
MboI	GATC	3 cut(s)	62, 315, 395
MboII	GAAGA	3 cut(s)	57, 247, 376
MflI	RGATCY	1 cut(s)	395
MluCI	AATT	3 cut(s)	243, 390, 410
Mly113I	GGCGCC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	35
MroNI	GCCGGC	2 cut(s)	74, 119
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	2 cut(s)	75, 120
MvnI	CGCG	2 cut(s)	104, 106
MwoI	GCNNNNNNNGC	5 cut(s)	30, 215, 262, 271, 295
NaeI	GCCGGC	2 cut(s)	76, 121
NarI	GGCGCC	1 cut(s)	150
NdeII	GATC	3 cut(s)	62, 315, 395
NgoMIV	GCCGGC	2 cut(s)	74, 119
NlaIV	GGNNCC	3 cut(s)	110, 151, 397
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	310
PaeR7I	CTCGAG	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	44
PdiI	GCCGGC	2 cut(s)	76, 121
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	4 cut(s)	26, 190, 220, 360
Ple19I	CGATCG	1 cut(s)	318
PluTI	GGCGCC	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	110, 151, 397
PspXI	VCTCGAGB	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	395
PvuI	CGATCG	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	265
RigI	GGCCGGCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SatI	GCNGC	4 cut(s)	25, 189, 219, 359
Sau3AI	GATC	3 cut(s)	62, 315, 395
SetI	ASST	8 cut(s)	17, 165, 198, 207, 267, 291, 300, 372
SfoI	GGCGCC	1 cut(s)	151
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	3 cut(s)	113, 176, 200
SmoI	CTYRAG	3 cut(s)	113, 176, 200
Sse9I	AATT	3 cut(s)	243, 390, 410
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	6 cut(s)	24, 106, 168, 274, 327, 399
SspDI	GGCGCC	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	44
StyI	CCWWGG	2 cut(s)	39, 69
TaqI	TCGA	1 cut(s)	177
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	3 cut(s)	243, 390, 410
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	188, 218, 358
Tsp45I	GTSAC	1 cut(s)	310
TspGWI	ACGGA	1 cut(s)	43
XapI	RAATTY	1 cut(s)	410
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.