Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Forward (+)

19947329 .. 19948184

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGACTTCTCCGACTTCCAAGGGCGGCCGCGGCAAGGCCAAGGCCACCAAGTCCGTCTCCCGTTCCTCCAAGGCCGGCCTCCAGTTCCCCGTCGGCCGTATCGCTCGCTTCCTCAAATCCGGCAAGTACGCCGAGCGTGTCGGCGCCGGTGCCCCCGTTTACCTCTCCGCCGTCCTCGAGTATCTCGCCGCCGAGGTTCTTGAGCTCGCTGGAAATGCCGCCAGGGATAACAAGAAGAATCGGATTGTTCCGAGGCATATCCAGCTGGCTGTGCGAAACGATGAGGAGTTGAGCAAGCTTTTGGGGACTGTGACTATTGCTAATGGAGGTGTTTTGCCTAACATTCATCAGAATCTGCTGCCGAAGAAGACCGGGAAAGGCAAGGGGGACATTGGATCGGCGTCGCAAGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

139

Amino Acids

14.57

Weight (kDa)

10.36

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	12 - 92	4.8e-15	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	95 - 128	1.6e-19	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	143, 149
AccII	CGCG	1 cut(s)	30
AciI	CCGC	6 cut(s)	24, 28, 30, 168, 189, 219
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	2 cut(s)	25, 94
AcyI	GRCGYC	2 cut(s)	144, 401
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	3 cut(s)	205, 265, 298
AluI	AGCT	3 cut(s)	205, 265, 298
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	403
AlwNI	CAGNNNCTG	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	6 cut(s)	25, 36, 42, 72, 76, 94
ApeKI	GCWGC	1 cut(s)	358
AspLEI	GCGC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	373
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	2 cut(s)	143, 149
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	345
BceAI	ACGGC	2 cut(s)	81, 155
BciT130I	CCWGG	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	6 cut(s)	25, 28, 31, 189, 219, 359
BlsI	GCNGC	6 cut(s)	26, 29, 32, 190, 220, 360
Bme1390I	CCNGG	2 cut(s)	223, 373
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	145, 151
BmrFI	CCNGG	2 cut(s)	223, 373
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	373
BsaHI	GRCGYC	2 cut(s)	144, 401
BsaJI	CCNNGG	7 cut(s)	18, 28, 39, 69, 192, 222, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	2 cut(s)	74, 146
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	7 cut(s)	18, 28, 39, 69, 192, 222, 251
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	154
BseX3I	CGGCCG	2 cut(s)	25, 94
BseXI	GCAGC	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	30
Bsh1285I	CGRYCG	2 cut(s)	28, 97
BshFI	GGCC	6 cut(s)	27, 38, 44, 74, 78, 96
BshNI	GGYRCC	2 cut(s)	143, 149
BsiEI	CGRYCG	2 cut(s)	28, 97
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	75, 120, 147, 372
BslFI	GGGAC	2 cut(s)	319, 401
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	319, 401
BsnI	GGCC	6 cut(s)	27, 38, 44, 74, 78, 96
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	154, 207
Bsp143I	GATC	1 cut(s)	395
BspACI	CCGC	6 cut(s)	24, 28, 30, 168, 189, 219
BspANI	GGCC	6 cut(s)	27, 38, 44, 74, 78, 96
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	145, 151
BspPI	GGATC	1 cut(s)	403
BspT107I	GGYRCC	2 cut(s)	143, 149
BsrFI	RCCGGY	2 cut(s)	74, 146
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	2 cut(s)	74, 146
BssECI	CCNNGG	7 cut(s)	18, 28, 39, 69, 192, 222, 251
BssMI	GATC	1 cut(s)	395
BssNI	GRCGYC	2 cut(s)	144, 401
BssT1I	CCWWGG	3 cut(s)	18, 39, 69
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	310
BstACI	GRCGYC	2 cut(s)	144, 401
BstC8I	GCNNGC	5 cut(s)	76, 106, 207, 267, 296
BstDSI	CCRYGG	1 cut(s)	28
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	398
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	395
BstMCI	CGRYCG	2 cut(s)	28, 97
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 215, 262, 271
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	221, 371
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	374
BstZI	CGGCCG	2 cut(s)	25, 94
BsuRI	GGCC	6 cut(s)	27, 38, 44, 74, 78, 96
BtgI	CCRYGG	1 cut(s)	28
Cac8I	GCNNGC	5 cut(s)	76, 106, 207, 267, 296
CaiI	CAGNNNCTG	1 cut(s)	355
CciNI	GCGGCCGC	1 cut(s)	25
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	2 cut(s)	74, 146
Cfr42I	CCGCGG	1 cut(s)	31
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	127
CviQI	GTAC	1 cut(s)	127
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
EaeI	YGGCCR	2 cut(s)	25, 94
EagI	CGGCCG	2 cut(s)	25, 94
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	205
EclXI	CGGCCG	2 cut(s)	25, 94
Eco130I	CCWWGG	3 cut(s)	18, 39, 69
Eco24I	GRGCYC	1 cut(s)	207
Eco52I	CGGCCG	2 cut(s)	25, 94
Eco53kI	GAGCTC	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	221
EcoT14I	CCWWGG	3 cut(s)	18, 39, 69
EcoT38I	GRGCYC	1 cut(s)	207
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	3 cut(s)	18, 39, 69
Esp3I	CGTCTC	1 cut(s)	61
FaiI	YATR	1 cut(s)	258
FaqI	GGGAC	2 cut(s)	319, 401
Fnu4HI	GCNGC	6 cut(s)	25, 28, 31, 189, 219, 359
FriOI	GRGCYC	1 cut(s)	207
FseI	GGCCGGCC	1 cut(s)	78
Fsp4HI	GCNGC	6 cut(s)	25, 28, 31, 189, 219, 359
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	6 cut(s)	25, 28, 31, 189, 219, 359
GsuI	CTGGAG	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	6 cut(s)	27, 38, 44, 74, 78, 96
HapII	CCGG	4 cut(s)	75, 120, 147, 372
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	2 cut(s)	144, 401
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	2 cut(s)	238, 352
HpaII	CCGG	4 cut(s)	75, 120, 147, 372
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	12, 243, 252, 351
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	2 cut(s)	95, 406
HpyCH4III	ACNGT	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 215, 262, 271
Hsp92I	GRCGYC	2 cut(s)	144, 401
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
KspI	CCGCGG	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	395
Lsp1109I	GCAGC	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MboII	GAAGA	3 cut(s)	247, 376, 379
MhlI	GDGCHC	2 cut(s)	154, 207
Mly113I	GGCGCC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	9 cut(s)	76, 89, 122, 173, 185, 187, 246, 277, 320
MroNI	GCCGGC	1 cut(s)	74
MspA1I	CMGCKG	2 cut(s)	30, 265
MspI	CCGG	4 cut(s)	75, 120, 147, 372
MspR9I	CCNGG	2 cut(s)	223, 373
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	4 cut(s)	30, 215, 262, 271
NaeI	GCCGGC	1 cut(s)	76
NarI	GGCGCC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	373
NdeII	GATC	1 cut(s)	395
NgoMIV	GCCGGC	1 cut(s)	74
NlaIV	GGNNCC	2 cut(s)	145, 151
NmeAIII	GCCGAG	2 cut(s)	157, 217
NmuCI	GTSAC	1 cut(s)	310
NotI	GCGGCCGC	1 cut(s)	25
PaeR7I	CTCGAG	1 cut(s)	176
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	238, 352
PkrI	GCNGC	6 cut(s)	26, 29, 32, 190, 220, 360
PluTI	GGCGCC	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	145, 151
PspXI	VCTCGAGB	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	265
RigI	GGCCGGCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	207
SacII	CCGCGG	1 cut(s)	31
SatI	GCNGC	6 cut(s)	25, 28, 31, 189, 219, 359
Sau3AI	GATC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	223, 373
SduI	GDGCHC	2 cut(s)	154, 207
SetI	ASST	6 cut(s)	165, 198, 207, 267, 300, 331
SfoI	GGCGCC	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	176
Sfr303I	CCGCGG	1 cut(s)	31
SgrAI	CRCCGGYG	1 cut(s)	146
SgrBI	CCGCGG	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	2 cut(s)	176, 200
SmoI	CTYRAG	2 cut(s)	176, 200
SsiI	CCGC	6 cut(s)	24, 28, 30, 168, 189, 219
SspDI	GGCGCC	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	221, 371
StyI	CCWWGG	3 cut(s)	18, 39, 69
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	177
TauI	GCSGC	5 cut(s)	27, 30, 33, 191, 221
TfiI	GAWTC	2 cut(s)	238, 352
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	43
XhoI	CTCGAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.