Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Reverse (-)

1464924 .. 1465205

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCGACTCGGAGCGTGCACTCGCAATGATCGAGCTACTATGCAGAGTCCCCGAGGGTTGCACTACTTTTGCGGCCCACGGGCTGACTATGCCACTGCTGGTGAAGACGATTCTGAAGATCTCGGACCGGATGACGGAGTACGCGGTAGGAGCGCTGCAATTGCTATGCTGGCCTTTGGAGAAGATCCAAAACGAGGCCTTAGTGGCGGGGGTTCTGACACAGGTAAGGGAGACGAGGGTGAGAAGAGAGAAGGGGTTGGAGATGATGGAGTAGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

9.62

Weight (kDa)

4.75

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	144
AciI	CCGC	3 cut(s)	72, 144, 207
AclWI	GGATC	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	141
AfeI	AGCGCT	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	134, 194
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	225
Alw44I	GTGCAC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	51
Aor51HI	AGCGCT	1 cut(s)	154
AoxI	GGCC	3 cut(s)	73, 171, 196
ApaLI	GTGCAC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	74, 125
AsuHPI	GGTGA	2 cut(s)	113, 251
AvaI	CYCGRG	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	156
BglI	GCCNNNNNGGC	1 cut(s)	204
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	2 cut(s)	73, 156
BlsI	GCNGC	2 cut(s)	74, 157
Bme18I	GGWCC	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	51
BmgT120I	GGNCC	2 cut(s)	74, 125
BpiI	GAAGAC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	52, 77
BsaWI	WCCGGW	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 194
Bse3DI	GCAATG	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	52, 77
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	134, 194
BseMI	GCAATG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	75, 173, 198
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	134, 194
BsmAI	GTCTC	1 cut(s)	225
BsmBI	CGTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	3 cut(s)	75, 173, 198
BsoBI	CYCGRG	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	28, 118, 184
BspACI	CCGC	3 cut(s)	72, 144, 207
BspANI	GGCC	3 cut(s)	75, 173, 198
BspFNI	CGCG	1 cut(s)	144
BspPI	GGATC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	52, 77
BssMI	GATC	3 cut(s)	28, 118, 184
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	16, 171
BstDEI	CTNAG	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	3 cut(s)	31, 121, 187
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	3 cut(s)	28, 118, 184
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 150, 161, 170, 204
BstSLI	GKGCMC	1 cut(s)	20
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	118, 184
BstYI	RGATCY	2 cut(s)	118, 184
BsuRI	GGCC	3 cut(s)	75, 173, 198
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	16, 171
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	74, 125
CpoI	CGGWCCG	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	140
CspI	CGGWCCG	1 cut(s)	125
CviJI	RGCY	5 cut(s)	35, 75, 83, 173, 198
CviKI_1	RGCY	5 cut(s)	35, 75, 83, 173, 198
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	3 cut(s)	30, 120, 186
DpnII	GATC	3 cut(s)	28, 118, 184
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco147I	AGGCCT	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	125
Eco47III	AGCGCT	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	225
FaiI	YATR	3 cut(s)	41, 90, 167
FaqI	GGGAC	1 cut(s)	33
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	73, 156
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	73, 156
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	2 cut(s)	73, 156
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	75, 173, 198
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	3 cut(s)	6, 46, 110
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	113, 251
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	4 cut(s)	11, 115, 125, 217
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	18, 43, 61, 158
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 150, 161, 170, 204
HpyF3I	CTNAG	1 cut(s)	200
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	28, 118, 184
LmnI	GCTCC	2 cut(s)	11, 150
LpnPI	CCDG	4 cut(s)	84, 141, 155, 207
Lsp1109I	GCAGC	1 cut(s)	142
MalI	GATC	3 cut(s)	30, 120, 186
MboI	GATC	3 cut(s)	28, 118, 184
MboII	GAAGA	4 cut(s)	116, 128, 194, 256
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	2 cut(s)	118, 184
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	3 cut(s)	47, 188, 229
MspI	CCGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	5 cut(s)	89, 150, 161, 170, 204
NdeII	GATC	3 cut(s)	28, 118, 184
PceI	AGGCCT	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	74, 157
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	74, 125
PsuI	RGATCY	2 cut(s)	118, 184
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
Rsr2I	CGGWCCG	1 cut(s)	125
RsrII	CGGWCCG	1 cut(s)	125
SatI	GCNGC	2 cut(s)	73, 156
Sau3AI	GATC	3 cut(s)	28, 118, 184
Sau96I	GGNCC	2 cut(s)	74, 125
SchI	GAGTC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	2 cut(s)	37, 226
SinI	GGWCC	1 cut(s)	125
Sse9I	AATT	1 cut(s)	159
SseBI	AGGCCT	1 cut(s)	198
SsiI	CCGC	3 cut(s)	72, 144, 207
StuI	AGGCCT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	159
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	110
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	100
VneI	GTGCAC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.