Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Reverse (-)

50554039 .. 50559218

Gene Structure 5180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00430410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTTTTTAAGAGCATACAATTGCATGTGACTGTGCTTGAACAGTTCAACAGAGGCAGAGGCAAGCCGAAGGCCACCAAGTCTGTGTCCAGGTCTAGCAAAGCCGGGCTTCAATTTCCGGTGGGTAGGATCGCCCGGTTTCTCAAGTCCGGCAAGTATGCCGAGCGTGTCGGTGCCGGAGCTCCGGTTTATCTCTCTGCCGTGCTTGAATACCTGGCAGCTGAGGTTTTGGAGCTTGCTGGCAACGCAGCTAGAGACAACAAGAAGAATCGTATTGTACCGAGGCACATTCAACTTGCGGTGAGGAATGACGAGGAGCTAAGCAAGCTTTTGGGGTCTGTGACTATTGCCAATGGAGGAGTTTTGCCCAACATTCACCAAACTCTTTTGCCTAAGAAGGTTGGGAAAGGCAAGGGCGATATCGGATCCGCTTCTCAGGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

148

Amino Acids

15.96

Weight (kDa)

10.35

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	24 - 102	1.1e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	105 - 138	2.6e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	2 cut(s)	299, 429
AclWI	GGATC	3 cut(s)	137, 420, 433
AfaI	GTAC	1 cut(s)	279
AgsI	TTSAA	5 cut(s)	41, 49, 113, 209, 293
AjnI	CCWGG	2 cut(s)	89, 213
AluBI	AGCT	6 cut(s)	182, 221, 235, 251, 319, 328
AluI	AGCT	6 cut(s)	182, 221, 235, 251, 319, 328
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	3 cut(s)	137, 420, 433
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	218, 248
AsuC2I	CCSGG	2 cut(s)	106, 136
AsuHPI	GGTGA	2 cut(s)	313, 368
BamHI	GGATCC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	230, 260
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	91, 215
BcnI	CCSGG	2 cut(s)	106, 136
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	3 cut(s)	96, 252, 445
BisI	GCNGC	2 cut(s)	219, 249
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	2 cut(s)	220, 250
Bme1390I	CCNGG	4 cut(s)	91, 106, 136, 215
BmiI	GGNNCC	2 cut(s)	175, 427
BmrFI	CCNGG	4 cut(s)	91, 106, 136, 215
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	106, 136
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	2 cut(s)	118, 184
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
BseBI	CCWGG	2 cut(s)	91, 215
BseDI	CCNNGG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	2 cut(s)	329, 372
BseXI	GCAGC	2 cut(s)	230, 260
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	6 cut(s)	105, 119, 136, 150, 177, 185
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	129, 425
Bsp1720I	GCTNAGC	1 cut(s)	320
BspACI	CCGC	2 cut(s)	299, 429
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	175, 427
BspPI	GGATC	3 cut(s)	137, 420, 433
BspT107I	GGYRCC	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	2 cut(s)	129, 425
Bst2UI	CCWGG	2 cut(s)	91, 215
Bst4CI	ACNGT	2 cut(s)	34, 45
BstC8I	GCNNGC	4 cut(s)	65, 237, 241, 326
BstDEI	CTNAG	4 cut(s)	222, 320, 393, 435
BstKTI	GATC	2 cut(s)	132, 428
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	129, 425
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 325
BstNI	CCWGG	2 cut(s)	91, 215
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	4 cut(s)	89, 104, 134, 213
BstV1I	GCAGC	2 cut(s)	230, 260
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	74
Cac8I	GCNNGC	4 cut(s)	65, 237, 241, 326
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	1 cut(s)	26
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	4 cut(s)	222, 320, 393, 435
DpnI	GATC	2 cut(s)	131, 427
DpnII	GATC	2 cut(s)	129, 425
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	89, 213
EcoRV	GATATC	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	1 cut(s)	29
FaiI	YATR	3 cut(s)	17, 27, 159
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FatI	CATG	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	219, 249
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	219, 249
FspBI	CTAG	3 cut(s)	96, 252, 445
GluI	GCNGC	2 cut(s)	219, 249
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	6 cut(s)	105, 119, 136, 150, 177, 185
Hin1II	CATG	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	6 cut(s)	105, 119, 136, 150, 177, 185
HphI	GGTGA	2 cut(s)	313, 368
Hpy188I	TCNGA	1 cut(s)	425
Hpy188III	TCNNGA	1 cut(s)	437
HpyAV	CCTTC	2 cut(s)	64, 391
HpyCH4III	ACNGT	2 cut(s)	34, 45
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 325
HpyF3I	CTNAG	4 cut(s)	222, 320, 393, 435
Hsp92II	CATG	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	129, 425
LmnI	GCTCC	4 cut(s)	179, 187, 232, 316
Lsp1109I	GCAGC	2 cut(s)	230, 260
MaeI	CTAG	3 cut(s)	96, 252, 445
MaeIII	GTNAC	2 cut(s)	28, 340
MalI	GATC	2 cut(s)	131, 427
MboI	GATC	2 cut(s)	129, 425
MboII	GAAGA	1 cut(s)	277
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	2 cut(s)	20, 113
MnlI	CCTC	7 cut(s)	47, 53, 217, 276, 297, 307, 350
MseI	TTAA	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	6 cut(s)	105, 119, 136, 150, 177, 185
MspR9I	CCNGG	4 cut(s)	91, 106, 136, 215
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	2 cut(s)	91, 215
MwoI	GCNNNNNNNGC	2 cut(s)	245, 325
NciI	CCSGG	2 cut(s)	106, 136
NdeII	GATC	2 cut(s)	129, 425
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	2 cut(s)	175, 427
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	28, 340
NspI	RCATGY	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	220, 250
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	89, 213
PspGI	CCWGG	2 cut(s)	89, 213
PspN4I	GGNNCC	2 cut(s)	175, 427
PsuI	RGATCY	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	219, 249
Sau3AI	GATC	2 cut(s)	129, 425
ScrFI	CCNGG	4 cut(s)	91, 106, 136, 215
SduI	GDGCHC	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	20, 113
SsiI	CCGC	2 cut(s)	299, 429
SspMI	CTAG	3 cut(s)	96, 252, 445
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	4 cut(s)	89, 104, 134, 213
TaaI	ACNGT	2 cut(s)	34, 45
TasI	AATT	2 cut(s)	20, 113
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseFI	GTSAC	2 cut(s)	28, 340
TseI	GCWGC	2 cut(s)	218, 248
Tsp45I	GTSAC	2 cut(s)	28, 340
XceI	RCATGY	1 cut(s)	29
XspI	CTAG	3 cut(s)	96, 252, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.