Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Forward (+)

30297676 .. 30299111

Gene Structure 1436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1227300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGTTCGAAAGAAGGAGCGTCGACGAAGGGAGGCAGAGGCAAGCCGAAGGCCTCGAAGTCTGTGTCGAGGTCGCATAAGGCTGGCCTTCAGTTTCCGGTGGGTAGGATCGCCCGATTTCTCAAGTCCGGAAAGTACGCCGAACGTGTCGGTGCCGGCGCACCTGTTTATCTCTCCGCCGTGCTAGAATACCTCGCTGCTGAGGTGTTGGAGCTCGCCGGAAACGCTGCAAGGGACAACAAGAAGAACCGCATTGTACCAAGGCACATCCAACTCGCGGTCCGGAATGACGAGGAGCTAAGCAAGCTGTTGGGGTCTGTGACCATCGCCAATGGAGGAGTGTTGCCAAATATCCACCAAACCCTCTTGCCGAACAAGGGTGGAAAAGGCAAGGGCGATATCGGTTCGGCCTCTCAGGAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

142

Amino Acids

14.82

Weight (kDa)

10.25

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	16 - 95	1e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	98 - 131	3.9e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	23
AccII	CGCG	1 cut(s)	278
AccIII	TCCGGA	2 cut(s)	128, 282
AciI	CCGC	3 cut(s)	177, 250, 278
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	2 cut(s)	137, 258
AfiI	CCNNNNNNNGG	2 cut(s)	277, 377
AflIII	ACRYGT	1 cut(s)	145
AluBI	AGCT	3 cut(s)	214, 298, 307
AluI	AGCT	3 cut(s)	214, 298, 307
Alw21I	GWGCWC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	116
Aor13HI	TCCGGA	2 cut(s)	128, 282
AoxI	GGCC	3 cut(s)	51, 85, 408
ApeKI	GCWGC	2 cut(s)	197, 227
ApoI	RAATTY	1 cut(s)	419
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	184, 214
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	185, 424
BisI	GCNGC	2 cut(s)	198, 228
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	2 cut(s)	199, 229
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	299
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	3 cut(s)	97, 128, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 377
Bse118I	RCCGGY	1 cut(s)	155
BseAI	TCCGGA	2 cut(s)	128, 282
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	277, 377
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	2 cut(s)	308, 351
BseXI	GCAGC	2 cut(s)	184, 214
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	3 cut(s)	53, 87, 410
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	5 cut(s)	98, 129, 156, 219, 283
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	277, 377
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	53, 87, 410
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp13I	TCCGGA	2 cut(s)	128, 282
Bsp143I	GATC	1 cut(s)	108
Bsp1720I	GCTNAGC	1 cut(s)	299
BspACI	CCGC	3 cut(s)	177, 250, 278
BspANI	GGCC	3 cut(s)	53, 87, 410
BspCNI	CTCAG	1 cut(s)	193
BspEI	TCCGGA	2 cut(s)	128, 282
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	5 cut(s)	44, 85, 157, 216, 305
BstDEI	CTNAG	3 cut(s)	201, 299, 414
BstF5I	GGATG	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 304
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	184, 214
BsuRI	GGCC	3 cut(s)	53, 87, 410
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	267
Cac8I	GCNNGC	5 cut(s)	44, 85, 157, 216, 305
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	280
CpoI	CGGWCCG	1 cut(s)	280
CseI	GACGC	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	136, 257
CspI	CGGWCCG	1 cut(s)	280
CviJI	RGCY	8 cut(s)	46, 53, 83, 87, 214, 298, 307, 410
CviKI_1	RGCY	8 cut(s)	46, 53, 83, 87, 214, 298, 307, 410
CviQI	GTAC	2 cut(s)	136, 257
DdeI	CTNAG	3 cut(s)	201, 299, 414
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	260
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	419
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	260
FaiI	YATR	1 cut(s)	78
FaqI	GGGAC	1 cut(s)	248
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	198, 228
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	198, 228
FspBI	CTAG	2 cut(s)	185, 424
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	2 cut(s)	198, 228
HaeIII	GGCC	3 cut(s)	53, 87, 410
HapII	CCGG	5 cut(s)	98, 129, 156, 219, 283
HgaI	GACGC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HpaII	CCGG	5 cut(s)	98, 129, 156, 219, 283
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188III	TCNNGA	3 cut(s)	129, 283, 416
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyAV	CCTTC	4 cut(s)	8, 22, 43, 98
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 304
HpyF3I	CTNAG	3 cut(s)	201, 299, 414
HpySE526I	ACGT	1 cut(s)	145
HspAI	GCGC	1 cut(s)	159
Kpn2I	TCCGGA	2 cut(s)	128, 282
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	3 cut(s)	17, 211, 295
LpnPI	CCDG	8 cut(s)	69, 111, 142, 169, 177, 232, 296, 401
Lsp1109I	GCAGC	2 cut(s)	184, 214
MaeI	CTAG	2 cut(s)	185, 424
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	1 cut(s)	419
MmeI	TCCRAC	2 cut(s)	189, 295
MroI	TCCGGA	2 cut(s)	128, 282
MroNI	GCCGGC	1 cut(s)	155
MspI	CCGG	5 cut(s)	98, 129, 156, 219, 283
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	224, 304
NaeI	GCCGGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	108
NgoMIV	GCCGGC	1 cut(s)	155
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	319
NspV	TTCGAA	1 cut(s)	8
PceI	AGGCCT	1 cut(s)	53
PdiI	GCCGGC	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	199, 229
Psp124BI	GAGCTC	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	280
RsaI	GTAC	2 cut(s)	137, 258
RsaNI	GTAC	2 cut(s)	136, 257
Rsr2I	CGGWCCG	1 cut(s)	280
RsrII	CGGWCCG	1 cut(s)	280
SacI	GAGCTC	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	22
SatI	GCNGC	2 cut(s)	198, 228
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	8 cut(s)	74, 148, 166, 195, 207, 216, 300, 309
SfuI	TTCGAA	1 cut(s)	8
SgrDI	CGTCGACG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	419
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	3 cut(s)	177, 250, 278
SspMI	CTAG	2 cut(s)	185, 424
SstI	GAGCTC	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	260
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	4 cut(s)	8, 23, 56, 68
TasI	AATT	1 cut(s)	419
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	197, 227
Tsp45I	GTSAC	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	23
XspI	CTAG	2 cut(s)	185, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.